#!/usr/bin/env python # -*- coding: utf-8 -*- import unittest import subprocess import os import sys qpackage_root = os.environ['QP_ROOT'] EZFIO = "{0}/install/EZFIO".format(qpackage_root) sys.path = [EZFIO + "/Python"] + sys.path from ezfio import ezfio from collections import defaultdict from collections import namedtuple Energy = namedtuple('Energy', ['without_pseudo', 'with_pseudo']) # ~#~#~ # # O p t # # ~#~#~ # precision = 5.e-7 # A test get a geo file and a basis file. # A global dict containt the result for this test # A test return True or Raise a error ! # More ezfio condition you set, beter it is # You cannot order the test flow. # So if you dont whant to remarque on test (for example the HF), set # a global variable and check for it global has_hf_alredy has_hf_alredy = False global filename_check def init_folder(geo, basis, mult=1, pseudo=False, ezfio_name=None): ''' Take a geo in arg (aka a existing geo.xyz in test/) And create the geo.ezfio with the adeguate basis and multipliciti DO NOT CHECK IS THE EZFIO FOLDER ALREADY EXIST ''' if not ezfio_name: ezfio_name = geo if pseudo: cmd = "qp_create_ezfio_from_xyz -b {0} -m {1} {2}.xyz -p -o {3}.ezfio" else: cmd = "qp_create_ezfio_from_xyz -b {0} -m {1} {2}.xyz -o {3}.ezfio" subprocess.check_call([cmd.format(basis, mult, geo, ezfio_name)], shell=True) def get_error_message(l_exepected, l_cur): l_msg = ["Need {0} get {1} error is {2}".format(i, j, abs(i - j)) for i, j in zip(l_exepected, l_cur)] return "\n" + "\n".join(l_msg) # _ # / |_ _ _ | o ._ ._ _|_ # \_ | | (/_ (_ |< | | | |_) |_| |_ # | def check_disk_acess(geo, basis, mult=1): import uuid filename = str(uuid.uuid4()) # ~#~#~#~ # # I n i t # # ~#~#~#~ # init_folder(geo, basis, mult, ezfio_name=filename) ezfio.set_file("{0}.ezfio".format(filename)) # ~#~#~#~#~#~#~#~#~#~#~#~#~ # # S e t _ p a r a m e t e r # # ~#~#~#~#~#~#~#~#~#~#~#~#~ # # Test 1 ezfio.integrals_bielec_disk_access_ao_integrals = "Write" cmd = "qp_edit -c {0}.ezfio".format(filename) subprocess.check_call([cmd], shell=True) # Test 2 ezfio.integrals_bielec_disk_access_ao_integrals = "IculeAcess" cmd = "qp_edit -c {0}.ezfio".format(filename) try: subprocess.check_call([cmd], shell=True) return_code = False except subprocess.CalledProcessError: return_code = True # ~#~#~#~#~#~#~#~ # # F i n a l i z e # # ~#~#~#~#~#~#~#~ # if return_code: subprocess.call(["rm -R {0}.ezfio".format(filename)], shell=True) return return_code def check_mo_guess(geo, basis, mult=1): import uuid filename = str(uuid.uuid4()) # ~#~#~#~ # # I n i t # # ~#~#~#~ # init_folder(geo, basis, mult, ezfio_name=filename) ezfio.set_file("{0}.ezfio".format(filename)) # ~#~#~#~#~#~#~#~#~#~#~#~#~ # # S e t _ p a r a m e t e r # # ~#~#~#~#~#~#~#~#~#~#~#~#~ # # Test 1 ezfio.hartree_fock_mo_guess_type = "Huckel" cmd = "qp_edit -c {0}.ezfio".format(filename) subprocess.check_call([cmd], shell=True) # Test 2 ezfio.hartree_fock_mo_guess_type = "IculeGuess" cmd = "qp_edit -c {0}.ezfio".format(filename) try: subprocess.check_call([cmd], shell=True) return_code = False except subprocess.CalledProcessError: return_code = True # ~#~#~#~#~#~#~#~ # # F i n a l i z e # # ~#~#~#~#~#~#~#~ # if return_code: subprocess.call(["rm -R {0}.ezfio".format(filename)], shell=True) return return_code # _ # / |_ _ _ | _. | _ _ # \_ | | (/_ (_ |< \/ (_| | |_| (/_ _> # def run_hf(geo, basis, mult=1, pseudo=False, remove_after_sucess=True): """ Run a simle by default hf EZFIO path = geo.ezfio """ # ~#~#~#~#~#~#~#~#~#~ # # R e f _ e n e r g y # # ~#~#~#~#~#~#~#~#~#~ # ref_energy = defaultdict(defaultdict) ref_energy["sto-3g"]["methane"] = Energy(-39.7267433402, None) ref_energy["vdz"]["SO2"] = Energy(None, -41.48912297776174) ref_energy["vdz"]["HBO"] = Energy(None, -19.1198231418) # ~#~#~#~#~#~#~#~#~#~#~#~#~#~#~ # # G l o b a l _ v a r i a b l e # # ~#~#~#~#~#~#~#~#~#~#~#~#~#~#~ # global has_hf_alredy has_hf_alredy = True # ~#~#~#~ # # I n i t # # ~#~#~#~ # init_folder(geo, basis, mult, pseudo) ezfio.set_file("{0}.ezfio".format(geo)) # ~#~#~#~#~#~#~#~#~#~#~#~#~ # # S e t _ p a r a m e t e r # # ~#~#~#~#~#~#~#~#~#~#~#~#~ # ezfio.bielec_integrals_direct = False ezfio.bielec_integrals_threshold_ao = 1.e-15 ezfio.bielec_integrals_disk_access_ao_integrals = "None" ezfio.bielec_integrals_threshold_mo = 1.e-15 ezfio.bielec_integrals_disk_access_mo_integrals = "None" ezfio.hartree_fock_mo_guess_type = "Huckel" ezfio.hartree_fock_thresh_scf = 1.e-10 ezfio.hartree_fock_n_it_scf_max = 100 ezfio.pseudo_do_pseudo = pseudo # ~#~#~ # # R u n # # ~#~#~ # cmd = "qp_run SCF {0}.ezfio/".format(geo) subprocess.check_call([cmd], shell=True) # ~#~#~#~#~ # # C h e c k # # ~#~#~#~#~ # cur_e = ezfio.get_hartree_fock_energy() ref_e = ref_energy[basis][geo] if pseudo: ref_e = ref_e.with_pseudo else: ref_e = ref_e.without_pseudo if abs(cur_e - ref_e) <= precision: if remove_after_sucess: subprocess.call(["rm -R {0}.ezfio".format(geo)], shell=True) return True else: raise ValueError(get_error_message([ref_e], [cur_e])) def run_full_ci_10k_pt2_end(geo, basis, pseudo): """ Run a Full_ci with 10k with the TruePT2 EZFIO path = geo.ezfio """ # ~#~#~#~#~#~#~#~#~#~ # # R e f _ e n e r g y # # ~#~#~#~#~#~#~#~#~#~ # ref_energy_var = defaultdict(dict) ref_energy_pt2 = defaultdict(dict) ref_energy_var["sto-3g"]["methane"] = Energy(-39.8058687211, None) ref_energy_pt2["sto-3g"]["methane"] = Energy(-39.8059180427, None) # ~#~#~#~ # # I n i t # # ~#~#~#~ # ezfio.set_file("{0}.ezfio".format(geo)) # ~#~#~#~#~#~#~#~#~#~#~#~#~ # # S e t _ p a r a m e t e r # # ~#~#~#~#~#~#~#~#~#~#~#~#~ # ezfio.full_ci_do_pt2_end = True ezfio.full_ci_n_det_max_fci = 10000 ezfio.full_ci_pt2_max = 1.e-8 # ~#~#~ # # R u n # # ~#~#~ # cmd = "qp_run full_ci {0}.ezfio/".format(geo) subprocess.check_call([cmd], shell=True) # ~#~#~#~#~ # # C h e c k # # ~#~#~#~#~ # cur_var = ezfio.get_full_ci_energy() cur_pt2 = ezfio.get_full_ci_energy_pt2() ref_var = ref_energy_var[basis][geo] ref_pt2 = ref_energy_pt2[basis][geo] if pseudo: ref_var = ref_var.with_pseudo ref_pt2 = ref_pt2.with_pseudo else: ref_var = ref_var.without_pseudo ref_pt2 = ref_pt2.without_pseudo t = [abs(cur_var - ref_var) <= precision, abs(cur_pt2 - ref_pt2) <= precision] if all(t): return True else: raise ValueError(get_error_message([ref_var, ref_pt2], [cur_var, cur_pt2])) def hf_then_10k_test(geo, basis, mult=1, pseudo=False): run_hf(geo, basis, mult, pseudo, remove_after_sucess=False) try: run_full_ci_10k_pt2_end(geo, basis, pseudo) except: raise else: return_code = True # ~#~#~#~#~#~#~#~ # # F i n a l i z e # # ~#~#~#~#~#~#~#~ # if return_code: subprocess.call(["rm -R {0}.ezfio".format(geo)], shell=True) return return_code # _ # / |_ _ _ | _. ._ _ _ ._ _ ._ _|_ # \_ | | (/_ (_ |< (_| |_) (_ (_) | | \/ (/_ | |_ # | | __ def check_convert(path_out): ''' Path_out is the out_file ''' # ~#~#~#~#~#~#~#~#~#~ # # R e f _ e n e r g y # # ~#~#~#~#~#~#~#~#~#~ # ref_energy = defaultdict(dict) ref_energy["HBO.out"] = -100.0185822589 # ~#~#~#~#~#~#~#~#~#~#~#~#~ # # S e t _ p a r a m e t e r # # ~#~#~#~#~#~#~#~#~#~#~#~#~ # cmd = "qp_convert_output_to_ezfio.py {0}".format(path_out) subprocess.check_call([cmd], shell=True) # Test 2 cmd = "qp_edit -c {0}.ezfio".format(path_out) subprocess.check_call([cmd], shell=True) cmd = "qp_run SCF {0}.ezfio".format(path_out) subprocess.check_call([cmd], shell=True) # ~#~#~#~#~ # # C h e c k # # ~#~#~#~#~ # ezfio.set_file("{0}.ezfio".format(path_out)) cur_e = ezfio.get_hartree_fock_energy() ref_e = ref_energy[path_out] if abs(cur_e - ref_e) <= precision: subprocess.call(["rm -R {0}.ezfio".format(path_out)], shell=True) return True else: raise ValueError(get_error_message([ref_e], [cur_e])) # ___ # | _ _ _|_ # | (/_ _> |_ # class ValueTest(unittest.TestCase): def test_hf_then_full_ci_10k_pt2_end(self): self.assertTrue(hf_then_10k_test(geo="methane", basis="sto-3g", mult=1, pseudo=False)) def test_hf(self): self.assertTrue(run_hf(geo="HBO", basis="vdz", mult=1, pseudo=True)) class ConvertTest(unittest.TestCase): def test_check_convert_hf_energy(self): self.assertTrue(check_convert("HBO.out")) class InputTest(unittest.TestCase): def test_check_disk_acess(self): self.assertTrue(check_disk_acess(geo="methane", basis="un-ccemd-ref")) def test_check_mo_guess(self): self.assertTrue(check_mo_guess(geo="methane", basis="maug-cc-pVDZ")) if __name__ == '__main__': unittest.main()