diff --git a/scripts/create_Makefile.sh b/scripts/create_Makefile.sh
index d0e29726..20fafac6 100755
--- a/scripts/create_Makefile.sh
+++ b/scripts/create_Makefile.sh
@@ -2,51 +2,27 @@
 # 
 # usage:
 #  create_Makefile.sh MOs AOs Electrons
-# Creates the Makefile with the dependencies on other modules given
-# in the command line. This command is supposed to be run in a module
-# directory and searches the dependencies in ../
+# Creates the Makefile . This command is supposed to be run in a 
+# module directory.
 # Thu Apr  3 01:44:41 CEST 2014
 
-DEPS_LONG=""
-for i in $@
-do
-  DEPS_LONG+=" $i "
-  DEPS_LONG+=$(cat ${QPACKAGE_ROOT}/src/${i}/NEEDED_MODULES)
-done
+MODULE=$(basename $PWD)
 
-DEPS=($(
-for d in $DEPS_LONG
-do
-  echo $d
-done | sort | uniq
-))
+if [[ $MODULE == "src" ]]
+then
+  echo "Error: This script should not be run in the src directory."
+  exit 1
+fi
 
-# Create the NEEDED_MODULES file
-cat << EOF > NEEDED_MODULES
-${DEPS[@]}
-EOF
-
-# Create the Makefile
 cat << EOF > Makefile
 default: all
 
-NEEDED_MODULES=\$(shell cat NEEDED_MODULES)
-
 # Define here all new external source files and objects.Don't forget to prefix the
 # object files with IRPF90_temp/
 SRC=
 OBJ=
 
-include Makefile.depend
-include \$(QPACKAGE_ROOT)/src/Makefile.config
 include \$(QPACKAGE_ROOT)/src/Makefile.common
-include irpf90.make
-
-irpf90.make: \$(filter-out IRPF90_temp/%, \$(wildcard */*.irp.f)) \$(wildcard *.irp.f) \$(wildcard *.inc.f) Makefile \$(EZFIO) NEEDED_MODULES
-	\$(IRPF90)
-
-Makefile.depend: NEEDED_MODULES
-	\$(QPACKAGE_ROOT)/scripts/create_Makefile_depend.sh
 EOF
 
 
diff --git a/scripts/create_Needed_modules.sh b/scripts/create_Needed_modules.sh
new file mode 100755
index 00000000..9b08b127
--- /dev/null
+++ b/scripts/create_Needed_modules.sh
@@ -0,0 +1,18 @@
+#!/bin/bash
+#
+# Creates the initial NEEDED_MODULES file.
+# This script is supposed to run in a module directory.
+# Thu Apr  3 13:38:38 CEST 2014
+
+MODULE=$(basename $PWD)
+
+if [[ $MODULE == "src" ]]
+then
+  echo "Error: This script should not be run in the src directory."
+  exit 1
+fi
+
+OUTPUT=$(${QPACKAGE_ROOT}/scripts/check_dependencies.sh $@)
+echo ${OUTPUT} > NEEDED_MODULES
+
+
diff --git a/scripts/create_module.sh b/scripts/create_module.sh
index b8fafbb7..f1151b41 100755
--- a/scripts/create_module.sh
+++ b/scripts/create_module.sh
@@ -7,7 +7,7 @@
 # All remaining aruments are dependencies.
 # Thu Apr  3 01:44:58 CEST 2014
 
-DEBUG=0
+DEBUG=1
 
 # If DEBUG=1, the print debug info.
 function debug()
@@ -21,18 +21,32 @@ function debug()
   else
     function debug()
     {
+      :
     }
   fi
   debug $@
 }
 
+function fail()
+{
+  echo "Error: " $@
+  cd ${QPACKAGE_ROOT}/src
+  rm -rf ${MODULE}
+  exit 1
+}
 
 
 
 MODULE=$1
-shift
-DEPS=$@
 
+# Check command line
+if [[ -z $MODULE ]]
+then
+  echo "usage: $(basename $0) <NewModuleName>"
+  exit 1
+fi
+
+shift
 
 
 
@@ -48,52 +62,75 @@ debug "Module does not already exist: OK"
 
 # Set up dependencies
 ALL_MODULES=$(cat NEEDED_MODULES)
+echo "Select which modules you are sure you will need:  (press q to quit)"  
+NEEDED_MODULES=""
+select M in ${ALL_MODULES}
+do
+  if [[ -z $M ]]
+  then
+    break
+  fi
+  NEEDED_MODULES+=" $M"
+  echo $NEEDED_MODULES
+done
 
 
 
-if [[ 1 -eq 0 ]] ; then # TODO
-
 # Create module directory and go into it
-if [[ ! mkdir ${QPACKAGE_ROOT}/src/${MODULE} ]]
+mkdir ${QPACKAGE_ROOT}/src/${MODULE} 
+if [[ $? != 0 ]]
 then
-  print "Unable to create module directory."
+  echo  "Error: Unable to create module directory."
   exit 1
 fi
 
 if [[ ! -d  ${QPACKAGE_ROOT}/src/${MODULE} ]]
 then
-  print "Something strange happened: the"
-  print  ${QPACKAGE_ROOT}/src/${MODULE} 
-  print "directory was not created."
+  echo  "Something strange happened: the"
+  echo   ${QPACKAGE_ROOT}/src/${MODULE} 
+  echo  "directory was not created."
   exit 1
 fi
 
 cd ${QPACKAGE_ROOT}/src/${MODULE}
 if [[ ${PWD} != ${QPACKAGE_ROOT}/src/${MODULE} ]]
 then
-  print "Something strange happened: we should be in"
-  print  ${QPACKAGE_ROOT}/src/${MODULE} 
-  print "but we are in"
-  print ${PWD}
+  echo  "Something strange happened: we should be in"
+  echo   ${QPACKAGE_ROOT}/src/${MODULE} 
+  echo  "but we are in"
+  echo  ${PWD}
   exit 1
 fi
 
 debug "Module directory is created."
 
 
-fi  # TODO
-
-
-
-
 
 # Create the Makefile
-${QPACKAGE_ROOT}/create_Makefile.sh
+${QPACKAGE_ROOT}/scripts/create_Makefile.sh || fail "Unable to create Makefile"
+if [[ ! -f Makefile ]]
+then
+  fail "Makefile was not created"
+fi
+debug "Makefile created"
+
+# Create the NEEDED_MODULES file
+${QPACKAGE_ROOT}/scripts/create_Needed_modules.sh ${NEEDED_MODULES} || fail "Unable to create the NEEDED_MODULES file"
+if [[ ! -f NEEDED_MODULES ]]
+then
+  fail "NEEDED_MODULES was not created"
+fi
+
+debug "NEEDED_MODULES created"
+
+
+# Create rst templates
+${QPACKAGE_ROOT}/scripts/create_rst_templates.sh || fail "Unable to create rst templates"
 
 
 # Update module list in main NEEDED_MODULES
 ALL_MODULES+=" ${MODULE}"
-cd ${QPACKAGE_ROOT}/src
-echo ${ALL_MODULES} > NEEDED_MODULES
+echo ${ALL_MODULES} > ${QPACKAGE_ROOT}/src/NEEDED_MODULES
 debug "Updated NEEDED_MODULES"
 
+
diff --git a/scripts/create_rst_templates.sh b/scripts/create_rst_templates.sh
new file mode 100755
index 00000000..fe403816
--- /dev/null
+++ b/scripts/create_rst_templates.sh
@@ -0,0 +1,58 @@
+#!/bin/bash
+#
+# Creates the rst files when creating a new module.
+# Thu Apr  3 11:54:16 CEST 2014
+
+MODULE=$(basename $PWD)
+
+if [[ $MODULE == "src" ]]
+then
+  echo "Error: This script should not be run in the src directory."
+  exit 1
+fi
+
+function asksure() {
+  echo -n $@ "(Y/N) "
+  while read -r -n 1 -s answer; do
+    if [[ $answer = [YyNn] ]]; then
+    [[ $answer = [Yy] ]] && retval=0
+    [[ $answer = [Nn] ]] && retval=1
+      break
+    fi
+  done
+  return $retval
+}
+
+if [[ -f README.rst ]]
+then
+  asksure "Overwrite existing README.rst file?" || exit 1
+fi
+
+UNDERLINE="======="
+declare -i i=0
+while [[ i -lt ${#MODULE} ]]
+do
+  UNDERLINE+="="
+  i+=1
+done
+
+cat << EOF > README.rst
+$UNDERLINE
+$MODULE Module
+$UNDERLINE
+
+
+
+Assumptions
+-----------
+
+.. include:: ./ASSUMPTIONS.rst
+
+
+Needed Modules
+--------------
+
+.. include:: ./NEEDED_MODULES
+
+EOF
+
diff --git a/src/Makefile.common b/src/Makefile.common
index d69e11bd..00177fb9 100644
--- a/src/Makefile.common
+++ b/src/Makefile.common
@@ -11,7 +11,7 @@ NEEDED_MODULES_OK=$(shell X=`$(QPACKAGE_ROOT)/scripts/check_dependencies.sh $(NE
 ifneq ($(NEEDED_MODULES_OK),OK)
   $(info ---------------------)
   $(info Your NEEDED_MODULES file is inconsistent. It should be:)
-  $(info $(NEEDED_MODULES))
+  $(info $(NEEDED_MODULES_OK))
   $(info ---------------------)
   $(error )
 endif
@@ -21,6 +21,8 @@ ifeq ($(IRP_VERSION_OK),False)
 $(error 'IRPF90 version >= 1.3 is required')
 endif
 
+README_RST_OK=$(shell ls README.rst || echo Failed)
+ASSUMPTIONS_RST_OK=$(shell ls ASSUMPTIONS.rst || echo Failed)
 
 MAKEFILE_OK=$(shell ls $(QPACKAGE_ROOT)/src/Makefile.config 2> /dev/null && echo True || echo False)
 ifeq ($(MAKEFILE_OK),False)
diff --git a/src/NEEDED_MODULES b/src/NEEDED_MODULES
index 77c2ba5e..99f5a6ef 100644
--- a/src/NEEDED_MODULES
+++ b/src/NEEDED_MODULES
@@ -1 +1 @@
-AOs  Bitmask  Electrons  Ezfio_files  MOs  Nuclei  Output  Utils 
+AOs Bitmask Electrons Ezfio_files MOs Nuclei Output Utils Mimi
diff --git a/src/README.rst b/src/README.rst
index 18773ac6..680f4235 100644
--- a/src/README.rst
+++ b/src/README.rst
@@ -26,7 +26,7 @@ ReStructured Text format to enable the automatic generation of the Sphinx
 documentation.
 
 When the current module depends on other modules, the list of modules should
-be added in the Makefile in the ``INCLUDE_DIRS`` variable.
+be added in the ``NEEDED_MODULES`` file.
 
 
 Creating a new module