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https://github.com/LCPQ/quantum_package
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Merge branch 'LCPQ-master'
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commit
ce35cfe2bb
@ -53,6 +53,6 @@ let psi_det () =
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let () =
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basis ();
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mo ();
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psi_det ()
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mo ()
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(* psi_det () *)
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@ -91,7 +91,7 @@ process = subprocess.Popen(
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stdout=subprocess.PIPE)
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out, err = process.communicate()
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basis_raw, sym_raw, _ , det_raw, _ = out.split("\n\n\n")
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basis_raw, sym_raw, _ = out.split("\n\n\n")
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# _ __
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# |_) _. _ o _ (_ _ _|_
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@ -129,27 +129,24 @@ print "END_BASIS_SET"
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#
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# Function
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#
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def same_character(item1):
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return item1 == item1[0] * len(item1)
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d_gms_order ={ 0:["s"],
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1:[ "x", "y", "z" ],
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2:[ "xx", "yy", "zz", "xy", "xz", "yz" ],
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3:[ "xxx", "yyy", "zzz", "xxy", "xxz", "yyx", "yyz", "zzx", "zzy", "xyz"],
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4: ["xxxx", "yyyy", "zzzz", "xxxy", "xxxz", "yyyx", "yyyz", "zzzx", "zzzy", "xxyy", "xxzz", "yyzz", "xxyz", "yyxz", "zzxy", "xxxx", "yyyy", "zzzz", "xxxy", "xxxz", "yyyx", "yyyz", "zzzx", "zzzy", "xxyy", "xxzz", "yyzz", "xxyz", "yyxz","zzxy"] }
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def compare_gamess_style(item1, item2):
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if len(item1) < len(item2):
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return -1
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elif len(item1) > len(item2):
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return 1
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elif same_character(item1) and same_character(item2):
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if item1 < item2:
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return -1
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n1,n2 = map(len,(item1,item2))
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assert (n1 == n2)
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try:
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l = d_gms_order[n1]
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except KeyError:
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return 0
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# raise (KeyError, "We dont handle L than 4")
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else:
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return 1
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elif same_character(item1) and not same_character(item2):
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return -1
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elif not same_character(item1) and same_character(item2):
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return 1
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else:
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return compare_gamess_style(item1[:-1], item2[:-1])
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a = l.index(item1)
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b = l.index(item2)
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return cmp( a, b )
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def expend_sym_str(str_):
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#Expend x2 -> xx
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@ -173,18 +170,22 @@ def expend_sym_l(l_l_sym):
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return l_l_sym
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def get_nb_permutation(str_):
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l = len(str_) - 1
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if l == 0:
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def n_orbital(n):
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if n==0:
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return 1
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elif n==1:
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return 3
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else:
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return 2 * (2 * l + 1)
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return 2*n_orbital(n-1)-n_orbital(n-2)+1
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def get_nb_permutation(str_):
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if (str_) == 's': return 1
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else: return n_orbital(len(str_))
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def order_l_l_sym(l_l_sym):
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n = 1
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for i in range(len(l_l_sym)):
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iter_ = range(len(l_l_sym))
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for i in iter_:
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if n != 1:
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n += -1
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continue
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@ -196,6 +197,7 @@ def order_l_l_sym(l_l_sym):
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key=lambda x: x[2],
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cmp=compare_gamess_style)
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return l_l_sym
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@ -330,6 +332,12 @@ if do_pseudo:
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# | \ _ _|_
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# |_/ (/_ |_
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#
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psi_coef = ezfio.get_determinants_psi_coef()
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psi_det = ezfio.get_determinants_psi_det()
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bit_kind = ezfio.get_determinants_bit_kind()
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print ""
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print "BEGIN_DET"
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print ""
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@ -337,26 +345,22 @@ print "mo_num", mo_num
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print "det_num", n_det
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print ""
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state = 0
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psi_coef = psi_coef[state]
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encode = 8*bit_kind
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token = "Determinants ::"
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pos = det_raw.rfind(token) + len(token)
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def bindigits(n, bits):
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s = bin(n & int("1"*bits, 2))[2:]
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return ("{0:0>%s}" % (bits)).format(s)
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det_without_header = det_raw[pos+2::]
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decode = lambda det: ''.join(bindigits(i,encode)[::-1] for i in det)[:mo_num]
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d_rep={"+":"1","-":"0"}
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for coef, (det_a, det_b) in zip(psi_coef, psi_det):
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det_without_header = det_raw[pos+2::]
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for line_raw in det_without_header.split("\n"):
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line = line_raw
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if line_raw:
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try:
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float(line)
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except ValueError:
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line= "".join([d_rep[x] if x in d_rep else x for x in line_raw])
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print line.strip()
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print coef
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print decode(det_a)
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print decode(det_b)
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print ''
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print "END_DET"
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@ -31,6 +31,6 @@ interface: ezfio,provider,ocaml
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[distributed_davidson]
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type: logical
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doc: If true, use the distributed algorithm
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default: False
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default: True
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interface: ezfio,provider,ocaml
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