Add NEED_CHILDREN_MODULE to replace NEEDED_MODULES

scripts/check_dependencies.sh

@@ -25,7 +25,7 @@ fi
 
 if [[ $1 == "-" ]]
 then
-  COMMAND_LINE=$(cat NEEDED_MODULES)
+  COMMAND_LINE=$(only_children_to_all_genealogy.py NEEDED_MODULES)
 else
   COMMAND_LINE=$(unique_list $@)
 fi
@@ -44,7 +44,7 @@ DEPS_LONG=""
 for i in $COMMAND_LINE
 do
   DEPS_LONG+=" $i "
-  DEPS_LONG+=$(cat "${QPACKAGE_ROOT}/src/${i}/NEEDED_MODULES")
+  DEPS_LONG+=$(only_children_to_all_genealogy.py "${QPACKAGE_ROOT}/src/${i}/NEEDED_MODULES")
 done
 
 DEPS=$(unique_list $DEPS_LONG)

scripts/clean_modules.sh

@@ -13,7 +13,7 @@ source ${QPACKAGE_ROOT}/scripts/qp_include.sh
 function do_clean()
 {
   rm -rf -- \
-    IRPF90_temp IRPF90_man Makefile.depend $(cat NEEDED_MODULES) include \
+    IRPF90_temp IRPF90_man Makefile.depend $(only_children_to_all_genealogy.py) include \
     ezfio_interface.irp.f irpf90.make irpf90_entities tags $(ls_exe) *.mod
 }
 

scripts/module/only_children_to_all_genealogy.py

@@ -0,0 +1,108 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import os
+import os.path
+
+dir_ = '/home/razoa/quantum_package/src'
+
+
+def get_dict_genealogy(all_children=False):
+
+    d_ref = dict()
+
+    for o in os.listdir(dir_):
+
+        try:
+            with open(os.path.join(dir_, o, "NEEDED_CHILDREN_MODULES"), "r") as f:
+                l_children = f.read().split()
+        except IOError:
+            pass
+        else:
+            d_ref[o] = l_children
+
+    if all_children:
+        for module in d_ref:
+            d_ref[module] = get_all_children(d_ref, d_ref[module], [])
+
+    return d_ref
+
+
+def module_children_to_all(d_ref,path):
+
+    if not path:
+        dir_ = os.getcwd()
+        path = os.path.join(dir_, "NEEDED_CHILDREN_MODULES")
+
+    try:
+        with open(path, "r") as f:
+            l_children = f.read().split()
+    except IOError:
+        return []
+    else:
+        needed_module = l_children
+        for module in l_children:
+
+            for children in get_all_children(d_ref, d_ref[module], []):
+                if children not in needed_module:
+                    needed_module.append(children)
+
+        return needed_module
+
+
+def get_all_children(d_ref, l_module, l=[]):
+    """
+    From a d_ref (who containt all the data --flatter or not-- create
+        an flatten list who contain all the children
+    """
+    for module in l_module:
+        if module not in l:
+            l.append(module)
+            get_all_children(d_ref, d_ref[module], l)
+
+    return list(set(l))
+
+
+def reduce_(d_ref, name):
+
+    """
+    Take a big list and try to find the lower parent
+    available
+    """
+    import itertools
+
+    a = sorted(get_all_children(d_ref[name]))
+
+    for i in xrange(len(d_ref)):
+        for c in itertools.combinations(d_ref, i):
+
+                l = []
+                b = sorted(get_all_children(c, l))
+
+                if a == b:
+                    return c
+
+#for i in sorted(d_ref):
+#    print i, reduce_(i)
+#
+
+if __name__ == '__main__':
+    import sys
+
+    try:
+        path = sys.argv[1]
+    except IndexError:
+        path = None
+
+    d_ref = get_dict_genealogy()
+
+    l_all_needed_molule = module_children_to_all(d_ref, path)
+    print " ".join(sorted(l_all_needed_molule))
+
+#    print d_ref
+#
+#    d_ref = get_dict_genealogy(True)
+#
+#    print d_ref
+#
+#    module_hl_to_ll(d_ref)

scripts/qp_include.sh

@@ -35,9 +35,9 @@ function check_current_dir_is_module()
      exit -1
   fi
 }
-if [[ -f NEEDED_MODULES ]]
+if [[ -f NEEDED_CHILDREN_MODULES ]]
 then
-  NEEDED_MODULES=$(cat NEEDED_MODULES)
+  NEEDED_MODULES=$(only_children_to_all_genealogy.py)
 fi
 
 # List of executables in the current directory

scripts/update_README.py

@@ -83,7 +83,7 @@ def update_needed(data):
     """Read the NEEDED_MODULES file, and replace the data with it.
     Create the links to the GitHub pages."""
 
-    file = open('NEEDED_MODULES', 'r')
+    file = open('NEEDED_CHILDREN_MODULES', 'r')
     modules = file.read()
     file.close()
 

src/AOs/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Nuclei

src/AOs/NEEDED_MODULES

@@ -1,2 +0,0 @@
-Ezfio_files Nuclei Output Utils
-

src/AOs/README.rst

@@ -39,10 +39,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 * `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/Bielec_integrals/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+MonoInts Bitmask

src/Bielec_integrals/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Bitmask Electrons Ezfio_files MOs Nuclei Output Utils MonoInts

src/Bielec_integrals/README.rst

@@ -16,15 +16,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 * `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
+* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
 
 Documentation
 =============

src/Bitmask/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+MOs

src/Bitmask/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Electrons Ezfio_files MOs Nuclei Output Utils

src/Bitmask/README.rst

@@ -40,13 +40,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 * `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/CAS_SD/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Perturbation Selectors_full Generators_CAS

src/CAS_SD/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Generators_CAS Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full Utils
-

src/CAS_SD/README.rst

@@ -24,21 +24,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Generators_CAS <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_CAS>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
+* `Generators_CAS <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_CAS>`_
 

src/CID/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Selectors_full SingleRefMethod

src/CID/NEEDED_MODULES

@@ -1,3 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Selectors_full SingleRefMethod Utils
-
-

src/CID/README.rst

@@ -15,21 +15,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/CID_SC2_selected/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+CID_selected

src/CID_SC2_selected/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask CISD CISD_selected Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full SingleRefMethod Utils
-

src/CID_SC2_selected/README.rst

@@ -19,23 +19,5 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
+* `CID_selected <http://github.com/LCPQ/quantum_package/tree/master/src/CID_selected>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `CISD <http://github.com/LCPQ/quantum_package/tree/master/src/CISD>`_
-* `CISD_selected <http://github.com/LCPQ/quantum_package/tree/master/src/CISD_selected>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
-* `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
-* `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/CID_selected/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Perturbation CID

src/CID_selected/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask CISD Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full SingleRefMethod Utils
-

src/CID_selected/README.rst

@@ -22,22 +22,6 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `CISD <http://github.com/LCPQ/quantum_package/tree/master/src/CISD>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
+* `CID <http://github.com/LCPQ/quantum_package/tree/master/src/CID>`_
-* `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
-* `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/CIS/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Selectors_full SingleRefMethod

src/CIS/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Selectors_full SingleRefMethod Utils
-

src/CIS/README.rst

@@ -31,19 +31,6 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/CISD/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Selectors_full SingleRefMethod

src/CISD/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Selectors_full SingleRefMethod Utils
-

src/CISD/README.rst

@@ -15,21 +15,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/CISD_SC2_selected/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+CISD_selected

src/CISD_SC2_selected/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask CISD CISD_selected Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full SingleRefMethod Utils
-

src/CISD_SC2_selected/README.rst

@@ -19,23 +19,5 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `CISD <http://github.com/LCPQ/quantum_package/tree/master/src/CISD>`_
 * `CISD_selected <http://github.com/LCPQ/quantum_package/tree/master/src/CISD_selected>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
-* `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
-* `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/CISD_selected/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Perturbation CISD

src/CISD_selected/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask CISD Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full SingleRefMethod Utils
-

src/CISD_selected/README.rst

@@ -28,22 +28,6 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `CISD <http://github.com/LCPQ/quantum_package/tree/master/src/CISD>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
+* `CISD <http://github.com/LCPQ/quantum_package/tree/master/src/CISD>`_
-* `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
-* `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/DDCI_selected/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Perturbation Selectors_full Generators_CAS

src/DDCI_selected/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Generators_CAS Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full Utils
-

src/DDCI_selected/README.rst

@@ -19,21 +19,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Generators_CAS <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_CAS>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
+* `Generators_CAS <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_CAS>`_
 

src/Determinants/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Bielec_integrals

src/Determinants/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Bielec_integrals Bitmask Electrons Ezfio_files MonoInts MOs Nuclei Output Utils

src/Determinants/README.rst

@@ -32,16 +32,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
 * `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/Electrons/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Output

src/Electrons/NEEDED_MODULES

@@ -1 +0,0 @@
-Ezfio_files Output Utils

src/Electrons/README.rst

@@ -24,9 +24,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 * `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/Ezfio_files/README.rst

@@ -30,3 +30,4 @@ Documentation
 
 
 
+

src/FCIdump/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Determinants

src/FCIdump/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files MonoInts MOs Nuclei Output Utils

src/FCIdump/README.rst

@@ -21,15 +21,5 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
 * `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/Full_CI/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Perturbation Selectors_full Generators_full

src/Full_CI/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Generators_full Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full Utils
-

src/Full_CI/README.rst

@@ -24,21 +24,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Generators_full <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_full>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
+* `Generators_full <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_full>`_
 

src/Generators_CAS/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Determinants

src/Generators_CAS/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files MonoInts MOs Nuclei Output Utils

src/Generators_CAS/README.rst

@@ -43,15 +43,5 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
 * `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/Generators_full/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Determinants Hartree_Fock

src/Generators_full/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Utils
-

src/Generators_full/README.rst

@@ -40,17 +40,6 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
 * `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 * `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/Generators_restart/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Determinants

src/Generators_restart/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files MonoInts MOs Nuclei Output Utils

src/Hartree_Fock/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Bielec_integrals MOGuess

src/Hartree_Fock/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Bielec_integrals Bitmask Electrons Ezfio_files MonoInts MOGuess MOs Nuclei Output Utils 

src/Hartree_Fock/README.rst

@@ -10,17 +10,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
 * `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
 * `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/MOGuess/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+MonoInts

src/MOGuess/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Electrons Ezfio_files MonoInts MOs Nuclei Output Utils

src/MOGuess/README.rst

@@ -8,14 +8,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 * `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/MOs/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+AOs Electrons

src/MOs/NEEDED_MODULES

@@ -1,3 +0,0 @@
-AOs Electrons Ezfio_files Nuclei Output Utils
-
-

src/MOs/README.rst

@@ -24,10 +24,6 @@ Needed Modules
 
 * `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
 * `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/MP2/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Perturbation Selectors_full SingleRefMethod

src/MP2/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full SingleRefMethod Utils
-

src/MP2/README.rst

@@ -19,21 +19,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/MRCC/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Perturbation Selectors_full Generators_full

src/MRCC/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Generators_full Hartree_Fock MOGuess MonoInts MOs Nuclei Output Perturbation Properties Selectors_full Utils
-

src/MRCC/README.rst

@@ -8,23 +8,9 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
-* `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Generators_full <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_full>`_
-* `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
-* `Properties <http://github.com/LCPQ/quantum_package/tree/master/src/Properties>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
+* `Generators_full <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_full>`_
 
 Documentation
 =============

src/Makefile.common

@@ -18,8 +18,8 @@ default: all .gitignore
 # Include the user's config
 include $(QPACKAGE_ROOT)/src/Makefile.config
 
-# Create the NEEDED_MODULES variable, needed for IRPF90
+# Create the NEEDED_CHILDREN_MODULES variable, needed for IRPF90
-NEEDED_MODULES=$(shell cat NEEDED_MODULES)
+NEEDED_CHILDREN_MODULES=$(shell only_children_to_all_genealogy.py)
 
 # Check and update dependencies
 include Makefile.depend
@@ -28,7 +28,7 @@ include Makefile.depend
 # Define the Makefile common variables
 EZFIO_DIR=$(QPACKAGE_ROOT)/EZFIO
 EZFIO=$(EZFIO_DIR)/lib/libezfio_irp.a
-INCLUDE_DIRS=$(NEEDED_MODULES) include
+INCLUDE_DIRS=$(NEEDED_CHILDREN_MODULES) include
 
 clean_links:
 	rm -f $(INCLUDE_DIRS) $$(basename $$PWD)
@@ -36,7 +36,7 @@ clean_links:
 LIB+=$(EZFIO) $(MKL)
 IRPF90+=$(patsubst %, -I %, $(INCLUDE_DIRS)) $(IRPF90_FLAGS)
 
-irpf90.make: $(filter-out IRPF90_temp/%, $(wildcard */*.irp.f)) $(wildcard *.irp.f) $(wildcard *.inc.f) Makefile $(EZFIO) NEEDED_MODULES $(wildcard *.py) 
+irpf90.make: $(filter-out IRPF90_temp/%, $(wildcard */*.irp.f)) $(wildcard *.irp.f) $(wildcard *.inc.f) Makefile $(EZFIO) NEEDED_CHILDREN_MODULES $(wildcard *.py) 
 	- $(IRPF90)
 	- update_README.py
 

src/Molden/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+MOs

src/Molden/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Electrons Ezfio_files MOs Nuclei Output Utils

src/Molden/README.rst

@@ -31,11 +31,5 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 * `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/MonoInts/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+MOs

src/MonoInts/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Electrons Ezfio_files MOs Nuclei Output Utils 

src/MonoInts/README.rst

@@ -4,13 +4,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 * `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/Nuclei/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Output

src/Nuclei/NEEDED_MODULES

@@ -1 +0,0 @@
-Ezfio_files Utils Output

src/Nuclei/README.rst

@@ -12,8 +12,6 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 * `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
 
 Documentation

src/Output/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Ezfio_files Utils

src/Output/NEEDED_MODULES

@@ -1 +0,0 @@
-Utils Ezfio_files

src/Output/README.rst

@@ -31,8 +31,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 * `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
+* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 
 Documentation
 =============

src/Perturbation/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Properties Hartree_Fock

src/Perturbation/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Properties Utils 
-

src/Properties/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Determinants

src/Properties/NEEDED_MODULES

@@ -1 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files MonoInts MOs Nuclei Output Utils 

src/Selectors_full/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Determinants Hartree_Fock

src/Selectors_full/NEEDED_MODULES

@@ -1,2 +0,0 @@
-AOs Bielec_integrals Bitmask Determinants Electrons Ezfio_files Hartree_Fock MOGuess MonoInts MOs Nuclei Output Utils
-

src/Selectors_full/README.rst

@@ -165,17 +165,6 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
-* `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
-* `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
-* `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
 * `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
-* `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
-* `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 * `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
-* `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
-* `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
-* `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
-* `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
-* `Output <http://github.com/LCPQ/quantum_package/tree/master/src/Output>`_
-* `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/Selectors_no_sorted/NEEDED_CHILDREN_MODULES

@@ -0,0 +1 @@
+Determinants