Cleaning scripts

scripts/archive_ezfio.sh

@@ -11,21 +11,21 @@ fi
 
 function archive()
 {
-  FILE=$1
-  MD5=$2
-  ARCHIVE=${QPACKAGE_ROOT}/data/cache/$MD5
-  if [[ -f $ARCHIVE ]]
+  FILE="$1"
+  MD5="$2"
+  ARCHIVE="${QPACKAGE_ROOT}/data/cache/$MD5"
+  if [[ -f "$ARCHIVE" ]]
   then
-    if ! diff $FILE ${QPACKAGE_ROOT}/data/cache/$MD5 &> /dev/null
+    if ! diff "$FILE" "${QPACKAGE_ROOT}/data/cache/$MD5" &> /dev/null
     then
       echo "Something went wrong. The file"
-      echo ${QPACKAGE_ROOT}/data/cache/$MD5
+      echo "${QPACKAGE_ROOT}/data/cache/$MD5"
       echo "is different from $FILE"
       echo "Aborting"
       return 1
     fi
   else
-    cp $FILE ${QPACKAGE_ROOT}/data/cache/$MD5
+    cp "$FILE" "${QPACKAGE_ROOT}/data/cache/$MD5"
   fi
 }
 
@@ -41,7 +41,7 @@ then
 fi
 
 
-cd ${QPACKAGE_ROOT}/EZFIO/src
+cd "${QPACKAGE_ROOT}/EZFIO/src"
 FILES=($(python << EOF | sort
 from read_config import * 
 for group in groups:
@@ -59,20 +59,20 @@ EOF
 ))
 cd $OLDPWD
 
-MD5_FILE=$(basename ${EZFIO_FILE} .ezfio).md5
-rm -f ${MD5_FILE}
+MD5_FILE=$(basename "${EZFIO_FILE}" .ezfio).md5
+rm -f -- "${MD5_FILE}"
 for FILE in ${FILES[@]}
 do
-  FILE=${EZFIO_FILE}/${FILE}
-  MD5=$(md5sum ${FILE} 2>/dev/null | cut -d ' ' -f 1)
+  FILE="${EZFIO_FILE}/${FILE}"
+  MD5=$(md5sum "${FILE}" 2>/dev/null | cut -d ' ' -f 1)
   if [[ ! -z $MD5 ]]
   then
-    if ! archive $FILE $MD5
+    if ! archive "$FILE" "$MD5"
     then
-      rm ${MD5_FILE}
+      rm -- "${MD5_FILE}"
       exit 1
     fi
-    echo $MD5 $FILE >> ${MD5_FILE}
+    echo "$MD5" "$FILE" >> "${MD5_FILE}"
   fi
 done
 

scripts/check_dependencies.sh

@@ -44,7 +44,7 @@ DEPS_LONG=""
 for i in $COMMAND_LINE
 do
   DEPS_LONG+=" $i "
-  DEPS_LONG+=$(cat ${QPACKAGE_ROOT}/src/${i}/NEEDED_MODULES)
+  DEPS_LONG+=$(cat "${QPACKAGE_ROOT}/src/${i}/NEEDED_MODULES")
 done
 
 DEPS=$(unique_list $DEPS_LONG)
@@ -53,7 +53,7 @@ if [[ ! "$COMMAND_LINE" == "$DEPS" ]]
 then
   DEPS=$(${QPACKAGE_ROOT}/scripts/check_dependencies.sh ${DEPS})
 fi
-echo $DEPS
+echo "$DEPS"
 
 if [[ "$COMMAND_LINE" == "$DEPS" ]]
 then

scripts/create_Makefile.sh

@@ -6,9 +6,9 @@
 # module directory.
 # Thu Apr  3 01:44:41 CEST 2014
 
-MODULE=$(basename $PWD)
+MODULE=$(basename "$PWD")
 
-if [[ $MODULE == "src" ]]
+if [[ "$MODULE" == "src" ]]
 then
   echo "Error: This script should not be run in the src directory."
   exit 1

scripts/create_Makefile_depend.sh

@@ -8,17 +8,17 @@
 
 SRC=""
 OBJ=""
-DEPS=$(cat NEEDED_MODULES)
+DEPS="$(cat NEEDED_MODULES)"
 
 for M in ${DEPS}
 do
   # X is the list of external source files
-  X=$(grep 'SRC=' ${QPACKAGE_ROOT}/src/${M}/Makefile 2>/dev/null |cut -d '=' -f 2) 
+  X=$(grep 'SRC=' "${QPACKAGE_ROOT}/src/${M}/Makefile" 2>/dev/null |cut -d '=' -f 2) 
   for f in ${X}
   do
     SRC+=" ${M}/${f}"
   done
-  X=$(grep 'OBJ=' ${QPACKAGE_ROOT}/src/${M}/Makefile 2>/dev/null |cut -d '=' -f 2) 
+  X=$(grep 'OBJ=' "${QPACKAGE_ROOT}/src/${M}/Makefile" 2>/dev/null |cut -d '=' -f 2) 
   for f in ${X}
   do
     OBJ+=" IRPF90_temp/${M}/${f/IRPF90_temp//}"

scripts/create_module.sh

@@ -29,9 +29,9 @@ function debug()
 
 function fail()
 {
-  echo "Error: " $@
-  cd ${QPACKAGE_ROOT}/src
-  rm -rf ${MODULE}
+  echo "Error:  $@"
+  cd "${QPACKAGE_ROOT}/src"
+  rm -rf -- "${MODULE}"
   exit 1
 }
 
@@ -68,7 +68,7 @@ debug "Module does not already exist: OK"
 
 
 # Set up dependencies
-ALL_MODULES=$(cat NEEDED_MODULES)
+ALL_MODULES="$(cat NEEDED_MODULES)"
 echo "Select which modules you are sure you will need:  (press q to quit)"  
 NEEDED_MODULES=""
 select M in ${ALL_MODULES}
@@ -78,34 +78,34 @@ do
     break
   fi
   NEEDED_MODULES+=" $M"
-  echo $NEEDED_MODULES
+  echo "$NEEDED_MODULES"
 done
 
 
 
 # Create module directory and go into it
-mkdir ${QPACKAGE_ROOT}/src/${MODULE} 
+mkdir "${QPACKAGE_ROOT}/src/${MODULE}"
 if [[ $? != 0 ]]
 then
   echo  "Error: Unable to create module directory."
   exit 1
 fi
 
-if [[ ! -d  ${QPACKAGE_ROOT}/src/${MODULE} ]]
+if [[ ! -d  "${QPACKAGE_ROOT}/src/${MODULE}" ]]
 then
   echo  "Something strange happened: the"
-  echo   ${QPACKAGE_ROOT}/src/${MODULE} 
+  echo  "${QPACKAGE_ROOT}/src/${MODULE}"
   echo  "directory was not created."
   exit 1
 fi
 
-cd ${QPACKAGE_ROOT}/src/${MODULE}
-if [[ ${PWD} != ${QPACKAGE_ROOT}/src/${MODULE} ]]
+cd "${QPACKAGE_ROOT}/src/${MODULE}"
+if [[ "${PWD}" != "${QPACKAGE_ROOT}/src/${MODULE}" ]]
 then
   echo  "Something strange happened: we should be in"
-  echo   ${QPACKAGE_ROOT}/src/${MODULE} 
+  echo  "${QPACKAGE_ROOT}/src/${MODULE}"
   echo  "but we are in"
-  echo  ${PWD}
+  echo  "${PWD}"
   exit 1
 fi
 
@@ -114,7 +114,7 @@ debug "Module directory is created."
 
 
 # Create the Makefile
-${QPACKAGE_ROOT}/scripts/create_Makefile.sh || fail "Unable to create Makefile"
+"${QPACKAGE_ROOT}/scripts/create_Makefile.sh" || fail "Unable to create Makefile"
 if [[ ! -f Makefile ]]
 then
   fail "Makefile was not created"
@@ -122,7 +122,7 @@ fi
 debug "Makefile created"
 
 # Create the NEEDED_MODULES file
-${QPACKAGE_ROOT}/scripts/create_Needed_modules.sh ${NEEDED_MODULES} || fail "Unable to create the NEEDED_MODULES file"
+"${QPACKAGE_ROOT}/scripts/create_Needed_modules.sh" ${NEEDED_MODULES} || fail "Unable to create the NEEDED_MODULES file"
 if [[ ! -f NEEDED_MODULES ]]
 then
   fail "NEEDED_MODULES was not created"
@@ -132,12 +132,12 @@ debug "NEEDED_MODULES created"
 
 
 # Create rst templates
-${QPACKAGE_ROOT}/scripts/create_rst_templates.sh || fail "Unable to create rst templates"
+"${QPACKAGE_ROOT}/scripts/create_rst_templates.sh" || fail "Unable to create rst templates"
 
 
 # Update module list in main NEEDED_MODULES
 ALL_MODULES+=" ${MODULE}"
-echo ${ALL_MODULES} > ${QPACKAGE_ROOT}/src/NEEDED_MODULES
+echo "${ALL_MODULES}" > "${QPACKAGE_ROOT}/src/NEEDED_MODULES"
 debug "Updated NEEDED_MODULES"
 
 
@@ -149,7 +149,7 @@ then
 fi
 
 cd tests || fail "Unable to enter into tests directory"
-${QPACKAGE_ROOT}/scripts/create_tests_Makefile.sh
+"${QPACKAGE_ROOT}/scripts/create_tests_Makefile.sh"
 cd ..
 if [[ ! -f tests/Makefile ]]
 then