diff --git a/ocaml/.gitignore b/ocaml/.gitignore
index 20613b5f..cbd77939 100644
--- a/ocaml/.gitignore
+++ b/ocaml/.gitignore
@@ -38,12 +38,12 @@ qp_print
 qp_run
 qp_set_ddci
 qp_set_mo_class
-Input_pseudo.ml
-Input_integrals_bielec.ml
-Input_hartree_fock.ml
-Input_perturbation.ml
 Input_determinants.ml
+Input_hartree_fock.ml
+Input_integrals_bielec.ml
+Input_perturbation.ml
 Input_properties.ml
+Input_pseudo.ml
 qp_edit.ml
 qp_edit
 qp_edit.native
diff --git a/plugins/CAS_SD/.gitignore b/plugins/CAS_SD/.gitignore
index 81eda54a..83395aa2 100644
--- a/plugins/CAS_SD/.gitignore
+++ b/plugins/CAS_SD/.gitignore
@@ -26,5 +26,5 @@ MOGuess
 Nuclei
 Hartree_Fock
 Properties
-cas_sd_selected
-cas_sd
\ No newline at end of file
+cas_sd
+cas_sd_selected
\ No newline at end of file
diff --git a/plugins/Full_CI/.gitignore b/plugins/Full_CI/.gitignore
index 6829d8a4..e03b6c51 100644
--- a/plugins/Full_CI/.gitignore
+++ b/plugins/Full_CI/.gitignore
@@ -26,7 +26,7 @@ MOGuess
 Nuclei
 Hartree_Fock
 Properties
-var_pt2_ratio
 target_pt2
 full_ci_no_skip
-full_ci
\ No newline at end of file
+full_ci
+var_pt2_ratio
\ No newline at end of file
diff --git a/plugins/MRCC/README.rst b/plugins/MRCC/README.rst
index db220340..2ba913ee 100644
--- a/plugins/MRCC/README.rst
+++ b/plugins/MRCC/README.rst
@@ -20,19 +20,19 @@ Documentation
 .. Do not edit this section. It was auto-generated from the
 .. by the `update_README.py` script.
 
-`ci_eigenvectors_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L95>`_
+`ci_eigenvectors_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L93>`_
   Eigenvectors/values of the CI matrix
 
 
-`ci_eigenvectors_s2_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L96>`_
+`ci_eigenvectors_s2_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L94>`_
   Eigenvectors/values of the CI matrix
 
 
-`ci_electronic_energy_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L94>`_
+`ci_electronic_energy_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L92>`_
   Eigenvectors/values of the CI matrix
 
 
-`ci_energy_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L161>`_
+`ci_energy_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L159>`_
   N_states lowest eigenvalues of the dressed CI matrix
 
 
@@ -76,20 +76,20 @@ Documentation
   Initial guess vectors are not necessarily orthonormal
 
 
-`delta_ij <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L49>`_
+`delta_ij <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L47>`_
   Dressing matrix in N_det basis
 
 
-`delta_ij_non_cas <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L40>`_
+`delta_ij_non_cas <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L38>`_
   Dressing matrix in SD basis
 
 
-`diagonalize_ci_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L176>`_
+`diagonalize_ci_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L174>`_
   Replace the coefficients of the CI states by the coefficients of the
   eigenstates of the CI matrix
 
 
-`dressing_type <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L32>`_
+`dressing_type <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L30>`_
   [ Simple | MRCC ]
 
 
@@ -131,7 +131,7 @@ Documentation
   Assume N_int is already provided.
 
 
-`h_matrix_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L79>`_
+`h_matrix_dressed <http://github.com/LCPQ/quantum_package/tree/master/src/MRCC/mrcc_utils.irp.f#L77>`_
   Dressed H with Delta_ij