Documented MOs

src/Bitmask/README.rst

@@ -7,7 +7,7 @@ the constants that will be used to define on which kind of integer the bitmasks
 will be defined.
 
 In the program, when an integer ``X`` is used to represent a bit string (like a determinant
-for example), it should be defined as, for example::
+for example), it should be defined as, for example:
 
 .. code-block:: fortran
 

src/MOs/README.rst

@@ -2,6 +2,19 @@
 MOs Module
 ==========
 
+Molecular orbitals are expressed as 
+
+.. math::
+
+  \phi_k({\bf r}) = \sum_i C_{ik} \chi_k({\bf r})
+
+The current set of molecular orbitals has a label ``mo_label``.
+When the orbitals are modified, the label should also be updated to keep
+everything consistent.
+
+When saving the MOs, the ``mo_basis`` directory of the EZFIO file is copied
+in the ``save`` directory, named by the current ``mo_label``.
+
 Needed Modules
 ==============
 

src/MOs/mos.ezfio_config

@@ -1,8 +1,5 @@
 mo_basis
   mo_tot_num         integer
   mo_coef            double precision  (ao_basis_ao_num,mo_basis_mo_tot_num)
-  mo_energy          double precision (mo_basis_mo_tot_num)
-  mo_occ             double precision (mo_basis_mo_tot_num)
-  mo_symmetry        character*(8)     (mo_basis_mo_tot_num)
   mo_label           character*(64)
 

src/MOs/mos.irp.f

@@ -19,13 +19,21 @@ BEGIN_PROVIDER [ integer, mo_tot_num_align ]
 END_PROVIDER
 
 
-BEGIN_PROVIDER [ character*(64), mo_label ]
+ BEGIN_PROVIDER [ double precision, mo_coef, (ao_num_align,mo_tot_num) ]
+&BEGIN_PROVIDER [ character*(64), mo_label ]
   implicit none
   BEGIN_DOC
-  ! Label characterizing the MOS (local, canonical, natural, etc)
+  ! Molecular orbital coefficients on AO basis set
+  ! mo_coef(i,j) = coefficient of the ith ao on the jth mo
+  ! mo_label : Label characterizing the MOS (local, canonical, natural, etc)
   END_DOC
+  integer                        :: i, j
+  double precision, allocatable  :: buffer(:,:)
+  !DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: buffer
   logical                        :: exists
   PROVIDE ezfio_filename
+
+  !Label
   call ezfio_has_mo_basis_mo_label(exists)
   if (exists) then
     call ezfio_get_mo_basis_mo_label(mo_label)
@@ -34,31 +42,7 @@ BEGIN_PROVIDER [ character*(64), mo_label ]
     call ezfio_set_mo_basis_mo_label(mo_label)
   endif
 
-END_PROVIDER
+  ! Coefs
-
-
-BEGIN_PROVIDER [ double precision, mo_energy, (mo_tot_num) ]
-  implicit none
-  BEGIN_DOC
-  ! Fock diagonal elements
-  END_DOC
-  PROVIDE ezfio_filename
-  mo_energy = 0.d0
-  call ezfio_get_mo_basis_mo_energy(mo_energy)
-END_PROVIDER
-
-
-BEGIN_PROVIDER [ double precision, mo_coef, (ao_num_align,mo_tot_num) ]
-  implicit none
-  BEGIN_DOC
-  ! Molecular orbital coefficients on AO basis set
-  ! mo_coef(i,j) = coefficient of the ith ao on the jth mo
-  END_DOC
-  integer                        :: i, j
-  double precision, allocatable  :: buffer(:,:)
-  !DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: buffer
-  
-  PROVIDE ezfio_filename
   allocate(buffer(ao_num,mo_tot_num))
   buffer = 0.d0
   call ezfio_get_mo_basis_mo_coef(buffer)