diff --git a/scripts/ezfio_interface/qp_convert_output_to_ezfio.py b/scripts/ezfio_interface/qp_convert_output_to_ezfio.py
index 1c541a21..dad1b9d0 100755
--- a/scripts/ezfio_interface/qp_convert_output_to_ezfio.py
+++ b/scripts/ezfio_interface/qp_convert_output_to_ezfio.py
@@ -3,7 +3,7 @@
 convert output of gamess/GAU$$IAN to ezfio
 
 Usage:
-    qp_convert_output_to_ezfio.py <file.out> [--ezfio=<folder.ezfio>]
+    qp_convert_output_to_ezfio.py <file.out> [--ezfio=<ezfio_directory>]
 
 Option:
     file.out is the file to check (like gamess.out)
@@ -271,7 +271,7 @@ def write_ezfio(res, filename):
     #
 
     # INPUT
-    # {% for lanel,zcore, l_block in l_atom  $}
+    # {% for label,zcore, l_block in l_atom  $}
     #       #local l_block l=0}
     #       {label} GEN {zcore} {len(l_block)-1 #lmax_block}
     #       {% for l_param in l_block%}
@@ -279,6 +279,7 @@ def write_ezfio(res, filename):
     #                {% for coef,n,zeta for l_param}
     #                    {coef,n, zeta}
 
+
     # OUTPUT
 
     # Local are 1 array padded by max(n_max_block) when l == 0  (output:k_loc_max)
@@ -308,8 +309,16 @@ def write_ezfio(res, filename):
             array_l_max_block.append(l_max_block)
             array_z_remove.append(z_remove)
 
-            matrix.append([[coef_n_zeta.split()[1:] for coef_n_zeta in l.split('\n')] for l in array_party[1:]])
-
+            x = [[coef_n_zeta.split() for coef_n_zeta in l.split('\n')] \
+               for l in array_party[1:] ]
+            x = []
+            for l in array_party[1:]:
+              y = []
+              for coef_n_zeta in l.split('\n'):
+                z = coef_n_zeta.split()
+                if z : y.append(z)
+              x.append(y)
+            matrix.append(x)
         return (matrix, array_l_max_block, array_z_remove)
 
     def get_local_stuff(matrix):
@@ -318,7 +327,6 @@ def write_ezfio(res, filename):
         k_loc_max = max(len(i) for i in matrix_local_unpad)
 
         matrix_local = [ pad(ll, k_loc_max, [0., 2, 0.]) for ll in matrix_local_unpad]
-
         m_coef = [[float(i[0]) for i in atom] for atom in matrix_local]
         m_n = [[int(i[1]) - 2 for i in atom] for atom in matrix_local]
         m_zeta = [[float(i[2]) for i in atom] for atom in matrix_local]
@@ -342,8 +350,21 @@ def write_ezfio(res, filename):
         return (l_max_block, k_max, m_coef_noloc, m_n_noloc, m_zeta_noloc)
 
     try:
-        pseudo_str = res_file.get_pseudo()
+        pseudo_str = []
+        label = ezfio.get_nuclei_nucl_label()
+        for ecp in res.pseudo:
+          pseudo_str += [ "%(label)s GEN %(zcore)d %(lmax)d" % { "label": label[ ecp["atom"]-1 ],
+                "zcore": ecp["zcore"], "lmax": ecp["lmax"] } ]
+          lmax = ecp["lmax"]
+          for l in [lmax] + list(range(0,lmax)):
+            pseudo_str += [ "%d"%len(ecp[str(l)]) ]
+            for t in ecp[str(l)]:
+              pseudo_str += [ "%f  %d  %f"%t ]
+          pseudo_str += [""]
+        pseudo_str = "\n".join(pseudo_str)
+             
         matrix, array_l_max_block, array_z_remove = parse_str(pseudo_str)
+        array_z_remove = map(float,array_z_remove)
     except:
         ezfio.set_pseudo_do_pseudo(False)
     else:
@@ -353,16 +374,18 @@ def write_ezfio(res, filename):
         # Z _ e f f , a l p h a / b e t a _ e l e c #
         # ~#~#~#~#~#~#~#~#~#~#~#~#~#~#~#~#~#~#~#~#~ #
 
-        ezfio.pseudo_charge_remove = array_z_remove
-        ezfio.nuclei_nucl_charge = [
-            i - j for i, j in zip(ezfio.nuclei_nucl_charge, array_z_remove)
-        ]
+        ezfio.set_pseudo_nucl_charge_remove(array_z_remove)
+        charge = ezfio.get_nuclei_nucl_charge()
+        charge = [ i - j for i, j in zip(charge, array_z_remove) ] 
+        ezfio.set_nuclei_nucl_charge (charge)
 
         import math
-        num_elec = sum(ezfio.nuclei_nucl_charge)
+        num_elec_diff = sum(array_z_remove)/2
+        nalpha = ezfio.get_electrons_elec_alpha_num() - num_elec_diff
+        nbeta  = ezfio.get_electrons_elec_beta_num() - num_elec_diff
 
-        ezfio.electrons_elec_alpha_num = int(math.ceil(num_elec / 2.))
-        ezfio.electrons_elec_beta_num = int(math.floor(num_elec / 2.))
+        ezfio.set_electrons_elec_alpha_num(nalpha)
+        ezfio.set_electrons_elec_beta_num( nbeta )
 
         # Change all the array 'cause EZFIO
         #   v_kl (v, l) => v_kl(l,v)
@@ -421,3 +444,4 @@ if __name__ == '__main__':
         print file_, 'recognized as', str(res_file).split('.')[-1].split()[0]
 
     write_ezfio(res_file, ezfio_file)
+    os.system("qp_run save_ortho_mos "+ezfio_file)