mirror of
https://github.com/LCPQ/quantum_package
synced 2024-12-22 20:35:19 +01:00
First MPI tests seem OK
This commit is contained in:
parent
6f68bc69e9
commit
334f165ff1
62
config/gfortran_mpi.cfg
Normal file
62
config/gfortran_mpi.cfg
Normal file
@ -0,0 +1,62 @@
|
|||||||
|
# Common flags
|
||||||
|
##############
|
||||||
|
#
|
||||||
|
# -ffree-line-length-none : Needed for IRPF90 which produces long lines
|
||||||
|
# -lblas -llapack : Link with libblas and liblapack libraries provided by the system
|
||||||
|
# -I . : Include the curent directory (Mandatory)
|
||||||
|
#
|
||||||
|
# --ninja : Allow the utilisation of ninja. (Mandatory)
|
||||||
|
# --align=32 : Align all provided arrays on a 32-byte boundary
|
||||||
|
#
|
||||||
|
#
|
||||||
|
[COMMON]
|
||||||
|
FC : mpif90 -ffree-line-length-none -I .
|
||||||
|
LAPACK_LIB : -lblas -llapack
|
||||||
|
IRPF90 : irpf90
|
||||||
|
IRPF90_FLAGS : --ninja --align=32 -DMPI
|
||||||
|
|
||||||
|
# Global options
|
||||||
|
################
|
||||||
|
#
|
||||||
|
# 1 : Activate
|
||||||
|
# 0 : Deactivate
|
||||||
|
#
|
||||||
|
[OPTION]
|
||||||
|
MODE : OPT ; [ OPT | PROFILE | DEBUG ] : Chooses the section below
|
||||||
|
CACHE : 1 ; Enable cache_compile.py
|
||||||
|
OPENMP : 1 ; Append OpenMP flags
|
||||||
|
|
||||||
|
# Optimization flags
|
||||||
|
####################
|
||||||
|
#
|
||||||
|
# -Ofast : Disregard strict standards compliance. Enables all -O3 optimizations.
|
||||||
|
# It also enables optimizations that are not valid
|
||||||
|
# for all standard-compliant programs. It turns on
|
||||||
|
# -ffast-math and the Fortran-specific
|
||||||
|
# -fno-protect-parens and -fstack-arrays.
|
||||||
|
[OPT]
|
||||||
|
FCFLAGS : -Ofast -msse4.2
|
||||||
|
|
||||||
|
# Profiling flags
|
||||||
|
#################
|
||||||
|
#
|
||||||
|
[PROFILE]
|
||||||
|
FC : -p -g
|
||||||
|
FCFLAGS : -Ofast -msse4.2
|
||||||
|
|
||||||
|
# Debugging flags
|
||||||
|
#################
|
||||||
|
#
|
||||||
|
# -fcheck=all : Checks uninitialized variables, array subscripts, etc...
|
||||||
|
# -g : Extra debugging information
|
||||||
|
#
|
||||||
|
[DEBUG]
|
||||||
|
FCFLAGS : -fcheck=all -g
|
||||||
|
|
||||||
|
# OpenMP flags
|
||||||
|
#################
|
||||||
|
#
|
||||||
|
[OPENMP]
|
||||||
|
FC : -fopenmp
|
||||||
|
IRPF90_FLAGS : --openmp
|
||||||
|
|
11
configure
vendored
11
configure
vendored
@ -66,7 +66,6 @@ d_dependency = {
|
|||||||
"python": [],
|
"python": [],
|
||||||
"ninja": ["g++", "python"],
|
"ninja": ["g++", "python"],
|
||||||
"make": [],
|
"make": [],
|
||||||
"gpi2": ["g++", "make"],
|
|
||||||
"p_graphviz": ["python"],
|
"p_graphviz": ["python"],
|
||||||
"bats": []
|
"bats": []
|
||||||
}
|
}
|
||||||
@ -142,11 +141,6 @@ f77zmq = Info(
|
|||||||
description=' F77-ZeroMQ',
|
description=' F77-ZeroMQ',
|
||||||
default_path=join(QP_ROOT_LIB, "libf77zmq.a") )
|
default_path=join(QP_ROOT_LIB, "libf77zmq.a") )
|
||||||
|
|
||||||
gpi2 = Info(
|
|
||||||
url='https://github.com/cc-hpc-itwm/GPI-2/archive/v1.3.0.tar.gz',
|
|
||||||
description=' GPI-2',
|
|
||||||
default_path=join(QP_ROOT_LIB64, "libGPI2.a") )
|
|
||||||
|
|
||||||
p_graphviz = Info(
|
p_graphviz = Info(
|
||||||
url='https://github.com/xflr6/graphviz/archive/master.tar.gz',
|
url='https://github.com/xflr6/graphviz/archive/master.tar.gz',
|
||||||
description=' Python library for graphviz',
|
description=' Python library for graphviz',
|
||||||
@ -161,7 +155,7 @@ d_info = dict()
|
|||||||
|
|
||||||
for m in ["ocaml", "m4", "curl", "zlib", "patch", "irpf90", "docopt",
|
for m in ["ocaml", "m4", "curl", "zlib", "patch", "irpf90", "docopt",
|
||||||
"resultsFile", "ninja", "emsl", "ezfio", "p_graphviz",
|
"resultsFile", "ninja", "emsl", "ezfio", "p_graphviz",
|
||||||
"zeromq", "f77zmq", "bats", "gpi2"]:
|
"zeromq", "f77zmq", "bats"]:
|
||||||
exec ("d_info['{0}']={0}".format(m))
|
exec ("d_info['{0}']={0}".format(m))
|
||||||
|
|
||||||
|
|
||||||
@ -497,6 +491,9 @@ def create_ninja_and_rc(l_installed):
|
|||||||
'# Choose the correct network interface',
|
'# Choose the correct network interface',
|
||||||
'# export QP_NIC=ib0',
|
'# export QP_NIC=ib0',
|
||||||
'# export QP_NIC=eth0',
|
'# export QP_NIC=eth0',
|
||||||
|
'',
|
||||||
|
'# Choose how to start MPI processes',
|
||||||
|
'# export QP_MPIRUN="mpirun"',
|
||||||
''
|
''
|
||||||
]
|
]
|
||||||
|
|
||||||
|
@ -4,6 +4,7 @@ open Qputils
|
|||||||
(* Environment variables :
|
(* Environment variables :
|
||||||
|
|
||||||
QP_PREFIX=gdb : to run gdb (or valgrind, or whatever)
|
QP_PREFIX=gdb : to run gdb (or valgrind, or whatever)
|
||||||
|
QP_MPIRUN=mpirun: to run mpi slaves
|
||||||
QP_TASK_DEBUG=1 : debug task server
|
QP_TASK_DEBUG=1 : debug task server
|
||||||
|
|
||||||
*)
|
*)
|
||||||
@ -15,7 +16,7 @@ let print_list () =
|
|||||||
let () =
|
let () =
|
||||||
Random.self_init ()
|
Random.self_init ()
|
||||||
|
|
||||||
let run slave exe ezfio_file =
|
let run slave mpi exe ezfio_file =
|
||||||
|
|
||||||
|
|
||||||
(** Check availability of the ports *)
|
(** Check availability of the ports *)
|
||||||
@ -115,13 +116,18 @@ let run slave exe ezfio_file =
|
|||||||
match Sys.getenv "QP_PREFIX" with
|
match Sys.getenv "QP_PREFIX" with
|
||||||
| Some x -> x^" "
|
| Some x -> x^" "
|
||||||
| None -> ""
|
| None -> ""
|
||||||
|
and mpirun =
|
||||||
|
match (mpi, Sys.getenv "QP_MPIRUN") with
|
||||||
|
| (true, None) -> "mpirun "
|
||||||
|
| (true, Some x) -> x^" "
|
||||||
|
| _ -> ""
|
||||||
and exe =
|
and exe =
|
||||||
match (List.find ~f:(fun (x,_) -> x = exe) executables) with
|
match (List.find ~f:(fun (x,_) -> x = exe) executables) with
|
||||||
| Some (_,x) -> x^" "
|
| Some (_,x) -> x^" "
|
||||||
| None -> assert false
|
| None -> assert false
|
||||||
in
|
in
|
||||||
let exit_code =
|
let exit_code =
|
||||||
match (Sys.command (prefix^exe^ezfio_file)) with
|
match (Sys.command (mpirun^prefix^exe^ezfio_file)) with
|
||||||
| 0 -> 0
|
| 0 -> 0
|
||||||
| i -> (Printf.printf "Program exited with code %d.\n%!" i; i)
|
| i -> (Printf.printf "Program exited with code %d.\n%!" i; i)
|
||||||
in
|
in
|
||||||
@ -141,7 +147,9 @@ let spec =
|
|||||||
let open Command.Spec in
|
let open Command.Spec in
|
||||||
empty
|
empty
|
||||||
+> flag "slave" no_arg
|
+> flag "slave" no_arg
|
||||||
~doc:(" Needed for slave tasks")
|
~doc:(" Required for slave tasks")
|
||||||
|
+> flag "mpi" no_arg
|
||||||
|
~doc:(" Required for MPI slaves")
|
||||||
+> anon ("executable" %: string)
|
+> anon ("executable" %: string)
|
||||||
+> anon ("ezfio_file" %: string)
|
+> anon ("ezfio_file" %: string)
|
||||||
;;
|
;;
|
||||||
@ -159,8 +167,8 @@ Executes a Quantum Package binary file among these:\n\n"
|
|||||||
)
|
)
|
||||||
)
|
)
|
||||||
spec
|
spec
|
||||||
(fun slave exe ezfio_file () ->
|
(fun slave mpi exe ezfio_file () ->
|
||||||
run slave exe ezfio_file
|
run slave mpi exe ezfio_file
|
||||||
)
|
)
|
||||||
|> Command.run ~version: Git.sha1 ~build_info: Git.message
|
|> Command.run ~version: Git.sha1 ~build_info: Git.message
|
||||||
|
|
||||||
|
5
plugins/MPI/.gitignore
vendored
Normal file
5
plugins/MPI/.gitignore
vendored
Normal file
@ -0,0 +1,5 @@
|
|||||||
|
IRPF90_temp/
|
||||||
|
IRPF90_man/
|
||||||
|
irpf90.make
|
||||||
|
irpf90_entities
|
||||||
|
tags
|
1
plugins/MPI/NEEDED_CHILDREN_MODULES
Normal file
1
plugins/MPI/NEEDED_CHILDREN_MODULES
Normal file
@ -0,0 +1 @@
|
|||||||
|
Utils
|
12
plugins/MPI/README.rst
Normal file
12
plugins/MPI/README.rst
Normal file
@ -0,0 +1,12 @@
|
|||||||
|
===
|
||||||
|
MPI
|
||||||
|
===
|
||||||
|
|
||||||
|
Needed Modules
|
||||||
|
==============
|
||||||
|
.. Do not edit this section It was auto-generated
|
||||||
|
.. by the `update_README.py` script.
|
||||||
|
Documentation
|
||||||
|
=============
|
||||||
|
.. Do not edit this section It was auto-generated
|
||||||
|
.. by the `update_README.py` script.
|
60
plugins/MPI/mpi.irp.f
Normal file
60
plugins/MPI/mpi.irp.f
Normal file
@ -0,0 +1,60 @@
|
|||||||
|
BEGIN_PROVIDER [ logical, mpi_initialized ]
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! Always true. Initialized MPI
|
||||||
|
END_DOC
|
||||||
|
IRP_IF MPI
|
||||||
|
include 'mpif.h'
|
||||||
|
integer :: ierr
|
||||||
|
call mpi_init(ierr)
|
||||||
|
if (ierr /= 0) then
|
||||||
|
print *, 'ierr = ', ierr
|
||||||
|
stop 'Unable to initialize MPI'
|
||||||
|
endif
|
||||||
|
IRP_ENDIF
|
||||||
|
mpi_initialized = .True.
|
||||||
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
|
BEGIN_PROVIDER [ integer, mpi_rank ]
|
||||||
|
&BEGIN_PROVIDER [ integer, mpi_size ]
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! Rank of MPI process and number of MPI processes
|
||||||
|
END_DOC
|
||||||
|
IRP_IF MPI
|
||||||
|
include 'mpif.h'
|
||||||
|
PROVIDE mpi_initialized
|
||||||
|
integer :: ierr
|
||||||
|
|
||||||
|
call MPI_COMM_RANK (MPI_COMM_WORLD, mpi_rank, ierr)
|
||||||
|
if (ierr /= 0) then
|
||||||
|
print *, 'ierr = ', ierr
|
||||||
|
stop 'Unable to get MPI rank'
|
||||||
|
endif
|
||||||
|
|
||||||
|
call MPI_COMM_SIZE (MPI_COMM_WORLD, mpi_size, ierr)
|
||||||
|
if (ierr /= 0) then
|
||||||
|
print *, 'ierr = ', ierr
|
||||||
|
stop 'Unable to get MPI size'
|
||||||
|
endif
|
||||||
|
|
||||||
|
IRP_ELSE
|
||||||
|
mpi_rank = 0
|
||||||
|
mpi_size = 1
|
||||||
|
IRP_ENDIF
|
||||||
|
ASSERT (mpi_rank >= 0)
|
||||||
|
ASSERT (mpi_rank < mpi_size)
|
||||||
|
|
||||||
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
|
BEGIN_PROVIDER [ logical, mpi_master ]
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! If true, rank is zero
|
||||||
|
END_DOC
|
||||||
|
mpi_master = (mpi_rank == 0)
|
||||||
|
|
||||||
|
END_PROVIDER
|
||||||
|
|
12
plugins/MPI/mpi_test.irp.f
Normal file
12
plugins/MPI/mpi_test.irp.f
Normal file
@ -0,0 +1,12 @@
|
|||||||
|
program MPI
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! MPI test program
|
||||||
|
END_DOC
|
||||||
|
print *, 'hello world'
|
||||||
|
print *, 'rank, size, master = ', mpi_rank, mpi_size, mpi_master
|
||||||
|
|
||||||
|
integer :: ierr
|
||||||
|
call MPI_FINALIZE(ierr)
|
||||||
|
print *, ierr
|
||||||
|
end
|
@ -280,7 +280,7 @@ subroutine get_inverse(A,LDA,m,C,LDC)
|
|||||||
integer :: info,lwork
|
integer :: info,lwork
|
||||||
integer, allocatable :: ipiv(:)
|
integer, allocatable :: ipiv(:)
|
||||||
double precision,allocatable :: work(:)
|
double precision,allocatable :: work(:)
|
||||||
allocate (ipiv(ao_num), work(ao_num*ao_num))
|
allocate (ipiv(m), work(m*m))
|
||||||
lwork = size(work)
|
lwork = size(work)
|
||||||
C(1:m,1:m) = A(1:m,1:m)
|
C(1:m,1:m) = A(1:m,1:m)
|
||||||
call dgetrf(m,m,C,size(C,1),ipiv,info)
|
call dgetrf(m,m,C,size(C,1),ipiv,info)
|
||||||
|
Loading…
Reference in New Issue
Block a user