Change image name, add image in README.rst, and add Graphviz in dependancy

.travis.yml

@@ -7,6 +7,7 @@ python:
 before_script:
   - sudo apt-get update
   - sudo apt-get install gfortran liblapack-dev 
+  - sudo apt-get install GraphViz
 
 script: 
   - ./setup_environment.sh --robot 

INSTALL.md

@@ -10,6 +10,10 @@
 * Bash
 * Patch (for opam)
 
+## Optional
+
+* graphviz
+
 
 ## Standard installation
 

scripts/module/module_handler.py

@@ -121,7 +121,12 @@ def create_png_from_path(path):
     "path = /home/razoa/quantum_package/src/Molden/NEEDED_CHILDREN_MODULES"
 
     l_module = os.path.split(path)[0].split("/")[-1]
-    create_png([l_module])
+
+    import pydot
+    try:
+        create_png([l_module])
+    except pydot.InvocationException:
+        pass
 
 
 def create_png(l_module):
@@ -154,8 +159,10 @@ def create_png(l_module):
         draw_module_edge(module, d_ref[module])
 
     # Save
-    path = '{0}.png'.format("_".join(l_module))
+    path = '{0}.png'.format("tree_dependancy")
+    # path = '{0}.png'.format("_".join(l_module))
     # print "png saved in {0}".format(path)
+
     graph.write_png(path)
 
 if __name__ == '__main__':

scripts/update_README.py

@@ -2,7 +2,7 @@
 
 """Updates the README.rst file as the include directive is disabled on GitHub."""
 __date__ = "Thu Apr  3 23:06:18 CEST 2014"
-__author__ = "Anthony Scemama & TApplencourt<scemama@irsamc.ups-tlse.fr>"
+__author__ = "Anthony Scemama<scemama@irsamc.ups-tlse.fr>  & TApplencourt "
 
 
 README = "README.rst"
@@ -81,10 +81,12 @@ def update_needed(data):
     modules = file.read()
     file.close()
 
+    header_image = ".. image:: tree_dependancy.png\n\n"
+
     if modules.strip() != "":
         modules = ['* `%s <%s%s>`_' % (x, URL, x) for x in modules.split()]
         modules = "\n".join(modules)
-        modules = Needed_key + header + modules + '\n\n'
+        modules = Needed_key + header + header_image + modules + '\n\n'
 
     has_modules = False
     for i in range(len(data)):

src/AOs/README.rst

@@ -39,6 +39,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Nuclei <http://github.com/LCPQ/quantum_package/tree/master/src/Nuclei>`_
 * `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/Bielec_integrals/README.rst

@@ -16,6 +16,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
 * `Bitmask <http://github.com/LCPQ/quantum_package/tree/master/src/Bitmask>`_
 

src/Bitmask/README.rst

@@ -40,6 +40,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
 
 Documentation

src/CAS_SD/README.rst

@@ -24,6 +24,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `Generators_CAS <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_CAS>`_

src/CID/README.rst

@@ -15,6 +15,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
 

src/CID_SC2_selected/README.rst

@@ -19,5 +19,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `CID_selected <http://github.com/LCPQ/quantum_package/tree/master/src/CID_selected>`_
 

src/CID_selected/README.rst

@@ -22,6 +22,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
 * `CID <http://github.com/LCPQ/quantum_package/tree/master/src/CID>`_
 

src/CIS/README.rst

@@ -31,6 +31,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
 

src/CISD/README.rst

@@ -15,6 +15,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_
 

src/CISD_SC2_selected/README.rst

@@ -19,5 +19,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `CISD_selected <http://github.com/LCPQ/quantum_package/tree/master/src/CISD_selected>`_
 

src/CISD_selected/README.rst

@@ -28,6 +28,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
 * `CISD <http://github.com/LCPQ/quantum_package/tree/master/src/CISD>`_
 

src/DDCI_selected/README.rst

@@ -19,6 +19,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `Generators_CAS <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_CAS>`_

src/Determinants/README.rst

@@ -32,6 +32,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
 
 Documentation

src/Electrons/README.rst

@@ -24,6 +24,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 
 Documentation

src/FCIdump/README.rst

@@ -21,5 +21,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
 

src/Full_CI/README.rst

@@ -24,6 +24,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `Generators_full <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_full>`_

src/Generators_CAS/README.rst

@@ -43,5 +43,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
 

src/Generators_full/README.rst

@@ -40,6 +40,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
 * `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_
 

src/Hartree_Fock/README.rst

@@ -10,6 +10,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Bielec_integrals <http://github.com/LCPQ/quantum_package/tree/master/src/Bielec_integrals>`_
 * `MOGuess <http://github.com/LCPQ/quantum_package/tree/master/src/MOGuess>`_
 

src/MOGuess/README.rst

@@ -8,6 +8,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `MonoInts <http://github.com/LCPQ/quantum_package/tree/master/src/MonoInts>`_
 
 Documentation

src/MOs/README.rst

@@ -36,6 +36,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `AOs <http://github.com/LCPQ/quantum_package/tree/master/src/AOs>`_
 * `Electrons <http://github.com/LCPQ/quantum_package/tree/master/src/Electrons>`_
 

src/MP2/README.rst

@@ -19,6 +19,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `SingleRefMethod <http://github.com/LCPQ/quantum_package/tree/master/src/SingleRefMethod>`_

src/MRCC/README.rst

@@ -8,6 +8,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Perturbation <http://github.com/LCPQ/quantum_package/tree/master/src/Perturbation>`_
 * `Selectors_full <http://github.com/LCPQ/quantum_package/tree/master/src/Selectors_full>`_
 * `Generators_full <http://github.com/LCPQ/quantum_package/tree/master/src/Generators_full>`_

src/Molden/README.rst

@@ -31,6 +31,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
 * `Utils <http://github.com/LCPQ/quantum_package/tree/master/src/Utils>`_
 

src/MonoInts/README.rst

@@ -4,6 +4,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `MOs <http://github.com/LCPQ/quantum_package/tree/master/src/MOs>`_
 * `Pseudo <http://github.com/LCPQ/quantum_package/tree/master/src/Pseudo>`_
 

src/Nuclei/README.rst

@@ -12,6 +12,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 
 Documentation

src/Pseudo/README.rst

@@ -16,5 +16,7 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Ezfio_files <http://github.com/LCPQ/quantum_package/tree/master/src/Ezfio_files>`_
 

src/Selectors_full/README.rst

@@ -165,6 +165,8 @@ Needed Modules
 .. Do not edit this section. It was auto-generated from the
 .. NEEDED_MODULES file.
 
+.. image:: tree_dependancy.png
+
 * `Determinants <http://github.com/LCPQ/quantum_package/tree/master/src/Determinants>`_
 * `Hartree_Fock <http://github.com/LCPQ/quantum_package/tree/master/src/Hartree_Fock>`_