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quantum_package/ocaml/Input_determinants_by_hand.ml

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2015-04-20 10:12:08 +02:00
open Qptypes;;
open Qputils;;
open Core.Std;;
module Determinants_by_hand : sig
type t =
{ n_int : N_int_number.t;
bit_kind : Bit_kind.t;
n_det : Det_number.t;
n_states : States_number.t;
n_states_diag : States_number.t;
expected_s2 : Positive_float.t;
psi_coef : Det_coef.t array;
psi_det : Determinant.t array;
} with sexp
val read : unit -> t option
val write : t -> unit
val to_string : t -> string
val to_rst : t -> Rst_string.t
val of_rst : Rst_string.t -> t option
end = struct
type t =
{ n_int : N_int_number.t;
bit_kind : Bit_kind.t;
n_det : Det_number.t;
n_states : States_number.t;
n_states_diag : States_number.t;
expected_s2 : Positive_float.t;
psi_coef : Det_coef.t array;
psi_det : Determinant.t array;
} with sexp
;;
let get_default = Qpackage.get_ezfio_default "determinants";;
let read_n_int () =
if not (Ezfio.has_determinants_n_int()) then
Ezfio.get_mo_basis_mo_tot_num ()
|> Bitlist.n_int_of_mo_tot_num
|> N_int_number.to_int
|> Ezfio.set_determinants_n_int
;
Ezfio.get_determinants_n_int ()
|> N_int_number.of_int
;;
let write_n_int n =
N_int_number.to_int n
|> Ezfio.set_determinants_n_int
;;
let read_bit_kind () =
if not (Ezfio.has_determinants_bit_kind ()) then
Lazy.force Qpackage.bit_kind
|> Bit_kind.to_int
|> Ezfio.set_determinants_bit_kind
;
Ezfio.get_determinants_bit_kind ()
|> Bit_kind.of_int
;;
let write_bit_kind b =
Bit_kind.to_int b
|> Ezfio.set_determinants_bit_kind
;;
let read_n_det () =
if not (Ezfio.has_determinants_n_det ()) then
Ezfio.set_determinants_n_det 1
;
Ezfio.get_determinants_n_det ()
|> Det_number.of_int
;;
let write_n_det n =
Det_number.to_int n
|> Ezfio.set_determinants_n_det
;;
let read_n_states () =
if not (Ezfio.has_determinants_n_states ()) then
Ezfio.set_determinants_n_states 1
;
Ezfio.get_determinants_n_states ()
|> States_number.of_int
;;
let write_n_states n =
States_number.to_int n
|> Ezfio.set_determinants_n_states
;;
let read_n_states_diag () =
if not (Ezfio.has_determinants_n_states_diag ()) then
read_n_states ()
|> States_number.to_int
|> Ezfio.set_determinants_n_states_diag
;
Ezfio.get_determinants_n_states_diag ()
|> States_number.of_int
;;
let write_n_states_diag ~n_states n =
let n_states = States_number.to_int n_states
and n = States_number.to_int n
in
Ezfio.set_determinants_n_states_diag (max n_states n)
;;
let read_expected_s2 () =
if not (Ezfio.has_determinants_expected_s2 ()) then
begin
let na = Ezfio.get_electrons_elec_alpha_num ()
and nb = Ezfio.get_electrons_elec_beta_num ()
in
let s = 0.5 *. (Float.of_int (na - nb))
in
Ezfio.set_determinants_expected_s2 ( s *. (s +. 1.) )
end
;
Ezfio.get_determinants_expected_s2 ()
|> Positive_float.of_float
;;
let write_expected_s2 s2 =
Positive_float.to_float s2
|> Ezfio.set_determinants_expected_s2
;;
let read_psi_coef () =
if not (Ezfio.has_determinants_psi_coef ()) then
begin
let n_states =
read_n_states ()
|> States_number.to_int
in
Ezfio.ezfio_array_of_list ~rank:2 ~dim:[| 1 ; n_states |]
~data:(List.init n_states ~f:(fun i -> if (i=0) then 1. else 0. ))
|> Ezfio.set_determinants_psi_coef
end;
Ezfio.get_determinants_psi_coef ()
|> Ezfio.flattened_ezfio
|> Array.map ~f:Det_coef.of_float
;;
let write_psi_coef ~n_det ~n_states c =
let n_det = Det_number.to_int n_det
and c = Array.to_list c
|> List.map ~f:Det_coef.to_float
and n_states = States_number.to_int n_states
in
Ezfio.ezfio_array_of_list ~rank:2 ~dim:[| n_det ; n_states |] ~data:c
|> Ezfio.set_determinants_psi_coef
;;
let read_psi_det () =
let n_int = read_n_int ()
and n_alpha = Ezfio.get_electrons_elec_alpha_num ()
|> Elec_alpha_number.of_int
and n_beta = Ezfio.get_electrons_elec_beta_num ()
|> Elec_beta_number.of_int
in
if not (Ezfio.has_determinants_psi_det ()) then
begin
let mo_tot_num = MO_number.get_max () in
let rec build_data accu = function
| 0 -> accu
| n -> build_data ((MO_number.of_int ~max:mo_tot_num n)::accu) (n-1)
in
let det_a = build_data [] (Elec_alpha_number.to_int n_alpha)
|> Bitlist.of_mo_number_list n_int
and det_b = build_data [] (Elec_beta_number.to_int n_beta)
|> Bitlist.of_mo_number_list n_int
in
let data = ( (Bitlist.to_int64_list det_a) @
(Bitlist.to_int64_list det_b) )
in
Ezfio.ezfio_array_of_list ~rank:3 ~dim:[| N_int_number.to_int n_int ; 2 ; 1 |] ~data:data
|> Ezfio.set_determinants_psi_det ;
end ;
let n_int = N_int_number.to_int n_int in
let psi_det_array = Ezfio.get_determinants_psi_det () in
let dim = psi_det_array.Ezfio.dim
and data = Ezfio.flattened_ezfio psi_det_array
in
assert (n_int = dim.(0));
assert (dim.(1) = 2);
assert (dim.(2) = (Det_number.to_int (read_n_det ())));
List.init dim.(2) ~f:(fun i ->
Array.sub ~pos:(2*n_int*i) ~len:(2*n_int) data)
|> List.map ~f:(Determinant.of_int64_array
~n_int:(N_int_number.of_int n_int)
~alpha:n_alpha ~beta:n_beta )
|> Array.of_list
;;
let write_psi_det ~n_int ~n_det d =
let data = Array.to_list d
|> Array.concat
|> Array.to_list
in
Ezfio.ezfio_array_of_list ~rank:3 ~dim:[| N_int_number.to_int n_int ; 2 ; Det_number.to_int n_det |] ~data:data
|> Ezfio.set_determinants_psi_det
;;
let read () =
if (Ezfio.has_mo_basis_mo_tot_num ()) then
Some
{ n_int = read_n_int () ;
bit_kind = read_bit_kind () ;
n_det = read_n_det () ;
n_states = read_n_states () ;
n_states_diag = read_n_states_diag () ;
expected_s2 = read_expected_s2 () ;
psi_coef = read_psi_coef () ;
psi_det = read_psi_det () ;
}
else
None
;;
let write { n_int ;
bit_kind ;
n_det ;
n_states ;
n_states_diag ;
expected_s2 ;
psi_coef ;
psi_det ;
} =
write_n_int n_int ;
write_bit_kind bit_kind;
write_n_det n_det;
write_n_states n_states;
write_n_states_diag ~n_states:n_states n_states_diag;
write_expected_s2 expected_s2;
write_psi_coef ~n_det:n_det psi_coef ~n_states:n_states;
write_psi_det ~n_int:n_int ~n_det:n_det psi_det;
;;
let to_rst b =
let mo_tot_num = Ezfio.get_mo_basis_mo_tot_num () in
let mo_tot_num = MO_number.of_int mo_tot_num ~max:mo_tot_num in
let det_text =
let nstates =
States_number.to_int b.n_states
and ndet =
Det_number.to_int b.n_det
in
let coefs_string i =
Array.init nstates (fun j ->
let ishift =
j*ndet
in
if (ishift < Array.length b.psi_coef) then
b.psi_coef.(i+ishift)
|> Det_coef.to_float
|> Float.to_string
else
"0."
)
|> String.concat_array ~sep:"\t"
in
Array.init ndet ~f:(fun i ->
Printf.sprintf " %s\n%s\n"
(coefs_string i)
(Determinant.to_string ~mo_tot_num:mo_tot_num b.psi_det.(i)
|> String.split ~on:'\n'
|> List.map ~f:(fun x -> " "^x)
|> String.concat ~sep:"\n"
)
)
|> String.concat_array ~sep:"\n"
in
Printf.sprintf "
Force the selected wave function to be an eigenfunction of S^2.
If true, input the expected value of S^2 ::
expected_s2 = %s
Number of requested states, and number of states used for the
Davidson diagonalization ::
n_states = %s
n_states_diag = %s
Number of determinants ::
n_det = %s
Determinants ::
%s
"
(b.expected_s2 |> Positive_float.to_string)
(b.n_states |> States_number.to_string)
(b.n_states_diag |> States_number.to_string)
(b.n_det |> Det_number.to_string)
det_text
|> Rst_string.of_string
;;
let to_string b =
let mo_tot_num = Ezfio.get_mo_basis_mo_tot_num () in
let mo_tot_num = MO_number.of_int mo_tot_num ~max:mo_tot_num in
Printf.sprintf "
n_int = %s
bit_kind = %s
n_det = %s
n_states = %s
n_states_diag = %s
expected_s2 = %s
psi_coef = %s
psi_det = %s
"
(b.n_int |> N_int_number.to_string)
(b.bit_kind |> Bit_kind.to_string)
(b.n_det |> Det_number.to_string)
(b.n_states |> States_number.to_string)
(b.n_states_diag |> States_number.to_string)
(b.expected_s2 |> Positive_float.to_string)
(b.psi_coef |> Array.to_list |> List.map ~f:Det_coef.to_string
|> String.concat ~sep:", ")
(b.psi_det |> Array.to_list |> List.map ~f:(Determinant.to_string
~mo_tot_num:mo_tot_num) |> String.concat ~sep:"\n\n")
;;
let of_rst r =
let r = Rst_string.to_string r
in
(* Split into header and determinants data *)
let idx = String.substr_index_exn r ~pos:0 ~pattern:"\nDeterminants"
in
let (header, dets) =
(String.prefix r idx, String.suffix r ((String.length r)-idx) )
in
(* Handle header *)
let header = r
|> String.split ~on:'\n'
|> List.filter ~f:(fun line ->
if (line = "") then
false
else
( (String.contains line '=') && (line.[0] = ' ') )
)
|> List.map ~f:(fun line ->
"("^(
String.tr line ~target:'=' ~replacement:' '
|> String.strip
)^")" )
|> String.concat
in
(* Handle determinant coefs *)
let dets = match ( dets
|> String.split ~on:'\n'
|> List.map ~f:(String.strip)
) with
| _::lines -> lines
| _ -> failwith "Error in determinants"
in
let psi_coef =
let rec read_coefs accu = function
| [] -> List.rev accu
| ""::""::tail -> read_coefs accu tail
| ""::c::tail ->
let c =
String.split ~on:'\t' c
|> List.map ~f:(fun x -> Det_coef.of_float (Float.of_string x))
|> Array.of_list
in
read_coefs (c::accu) tail
| _::tail -> read_coefs accu tail
in
let a =
let buffer =
read_coefs [] dets
in
let nstates =
List.hd_exn buffer
|> Array.length
in
let extract_state i =
let i =
i-1
in
List.map ~f:(fun x -> Det_coef.to_string x.(i)) buffer
|> String.concat ~sep:" "
in
let rec build_result = function
| 1 -> extract_state 1
| i -> (build_result (i-1))^" "^(extract_state i)
in
build_result nstates
in
"(psi_coef ("^a^"))"
in
(* Handle determinants *)
let psi_det =
let n_alpha = Ezfio.get_electrons_elec_alpha_num ()
|> Elec_alpha_number.of_int
and n_beta = Ezfio.get_electrons_elec_beta_num ()
|> Elec_beta_number.of_int
in
let rec read_dets accu = function
| [] -> List.rev accu
| ""::c::alpha::beta::tail ->
begin
let alpha = String.rev alpha |> Bitlist.of_string ~zero:'-' ~one:'+'
and beta = String.rev beta |> Bitlist.of_string ~zero:'-' ~one:'+'
in
let newdet = Determinant.of_bitlist_couple
~alpha:n_alpha ~beta:n_beta (alpha,beta)
|> Determinant.sexp_of_t |> Sexplib.Sexp.to_string
in
read_dets (newdet::accu) tail
end
| _::tail -> read_dets accu tail
in
let a = read_dets [] dets
|> String.concat
in
"(psi_det ("^a^"))"
in
let bitkind = Printf.sprintf "(bit_kind %d)" (Lazy.force Qpackage.bit_kind
|> Bit_kind.to_int)
and n_int = Printf.sprintf "(n_int %d)" (N_int_number.get_max ()) in
let s = String.concat [ header ; bitkind ; n_int ; psi_coef ; psi_det]
in
Generic_input_of_rst.evaluate_sexp t_of_sexp s
;;
end