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add converter changes from @anbenali
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@ -440,10 +440,10 @@ def get_j3ao_new(fname,nao,Nk):
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# in new(?) version of PySCF, there is an extra layer of groups before the datasets
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# in new(?) version of PySCF, there is an extra layer of groups before the datasets
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# datasets used to be [/j3c/0, /j3c/1, /j3c/2, ...]
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# datasets used to be [/j3c/0, /j3c/1, /j3c/2, ...]
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# datasets now are [/j3c/0/0, /j3c/1/0, /j3c/2/0, ...]
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# datasets now are [/j3c/0/0, /j3c/1/0, /j3c/2/0, ...]
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#keysub = '/0' if bool(j3c.get('0/0',getclass=True)) else ''
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keysub = '/0' if bool(j3c.get('0/0',getclass=True)) else ''
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#naux = max(map(lambda k: j3c[k+keysub].shape[0],j3c.keys()))
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naux = max(map(lambda k: j3c[k+keysub].shape[0],j3c.keys()))
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naux = max(map(lambda k: j3c[k]['0'].shape[0],j3c.keys()))
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#naux = max(map(lambda k: j3c[k]['0'].shape[0],j3c.keys()))
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naosq = nao*nao
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naosq = nao*nao
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naotri = (nao*(nao+1))//2
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naotri = (nao*(nao+1))//2
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@ -452,12 +452,15 @@ def get_j3ao_new(fname,nao,Nk):
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j3arr = np.zeros((nkpairs,naux,nao,nao),dtype=np.complex128)
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j3arr = np.zeros((nkpairs,naux,nao,nao),dtype=np.complex128)
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for i,kpair in enumerate(j3ckeys):
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for i,kpair in enumerate(j3ckeys):
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tmpdat = np.concatenate([j3c[kpair][ii][()] for ii in j3c[kpair]],axis=1)
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iaux,dim2 = j3c[kpair+keysub].shape
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iaux,dim2 = tmpdat.shape
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#tmpdat = np.concatenate([j3c[kpair][ii][()] for ii in j3c[kpair]],axis=1)
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#iaux,dim2 = tmpdat.shape
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if (dim2==naosq):
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if (dim2==naosq):
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j3arr[i,:iaux,:,:] = tmpdat.reshape([iaux,nao,nao]).transpose((0,2,1)) * nkinvsq
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j3arr[i,:iaux,:,:] = j3c[kpair+keysub][()].reshape([iaux,nao,nao]).transpose((0,2,1)) * nkinvsq
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#j3arr[i,:iaux,:,:] = tmpdat.reshape([iaux,nao,nao]).transpose((0,2,1)) * nkinvsq
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else:
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else:
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j3arr[i,:iaux,:,:] = makesq3(tmpdat.conj(),nao) * nkinvsq
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j3arr[i,:iaux,:,:] = makesq3(j3c[kpair+keysub][()].conj(),nao) * nkinvsq
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#j3arr[i,:iaux,:,:] = makesq3(tmpdat.conj(),nao) * nkinvsq
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return j3arr
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return j3arr
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@ -586,12 +589,14 @@ def pyscf2QP2(cell,mf, kpts, kmesh=None, cas_idx=None, int_threshold = 1E-8,
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print('n_atom per kpt', natom)
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print('n_atom per kpt', natom)
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#BY DEFAULT SEEMS TO BE IN BOHR
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atom_xyz = mf.cell.atom_coords()
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atom_xyz = mf.cell.atom_coords()
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unit_bohr=1.0
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unit_bohr=1.0
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if not(mf.cell.unit.startswith(('B','b','au','AU'))):
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if not(mf.cell.unit.startswith(('B','b','au','AU'))):
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from pyscf.data.nist import BOHR
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from pyscf.data.nist import BOHR
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atom_xyz /= BOHR # always convert to au
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# atom_xyz *= BOHR # always convert to au
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# atom_xyz /= BOHR # always convert to au
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unit_bohr=BOHR
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unit_bohr=BOHR
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with h5py.File(qph5path,'a') as qph5:
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with h5py.File(qph5path,'a') as qph5:
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