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init commit mo_localization
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2
src/mo_localization/NEED
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2
src/mo_localization/NEED
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hartree_fock
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utils_trust_region
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94
src/mo_localization/README.md
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94
src/mo_localization/README.md
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Please, use the ifort compiler
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Some parameters can be changed with qp edit in the utils_trust_region section
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If you modify the .org files, don't forget to do (you need emacs):
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```
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./TANGLE_org_mode.sh
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ninja
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```
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The documentation can be read using:
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Ctrl-C Ctrl-e l p
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after opening the filename.org in emacs. It will produce a
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filename.pdf.
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(Not available for all the files)
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!!! Warning: the documentation can contain some errors !!!
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# Orbital localisation
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To localize the MOs:
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```
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qp run localization
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```
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After that the ezfio directory contains the localized MOs
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But the mo_class must be defined before, run
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```
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qp set_mo_class -q
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```
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for more information or
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```
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qp set_mo_class -c [] -a [] -v [] -i [] -d []
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```
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to set the mo classes. We don't care about the name of the
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mo classes. The algorithm just localizes all the MOs of
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a given class between them, for all the classes, except the deleted MOs.
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If you just on kind of mo class to localize all the MOs between them
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you have to put:
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```
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qp set mo_localization security_mo_class false
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```
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Before the localization, a kick is done for each mo class
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(except the deleted ones) to break the MOs. This is done by
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doing a given rotation between the MOs.
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This feature can be removed by setting:
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```
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qp set mo_localization kick_in_mos false
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```
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and the default angle for the rotation can be changed with:
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```
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qp set mo_localization angle_pre_rot 1e-3 # or something else
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```
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After the localization, the MOs of each class (except the deleted ones)
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can be sorted between them using the diagonal elements of
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the fock matrix with:
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```
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qp set mo_localization sort_mos_by_e true
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```
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You can check the Hartree-Fock energy before/during/after the localization
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by putting (only for debugging):
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```
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qp set mo_localization debug_hf true
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```
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## Foster-Boys & Pipek-Mezey
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Foster-Boys:
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```
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qp set mo_localization localization_method boys
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```
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Pipek-Mezey:
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```
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qp set mo_localization localization_method pipek
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```
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# Break the spatial symmetry of the MOs
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To break the spatial symmetry of the MOs:
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```
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qp run break_spatial_sym
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```
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The default angle for the rotations is too big for this kind of
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application, a value between 1e-3 and 1e-6 should break the spatial
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symmetry with just a small change in the energy:
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```
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qp set mo_localization angle_pre_rot 1e-3
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```
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# Further improvements:
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- Cleaner repo
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- Correction of the errors in the documentations
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- option with/without trust region
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7
src/mo_localization/TANGLE_org_mode.sh
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src/mo_localization/TANGLE_org_mode.sh
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#!/bin/sh
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list='ls *.org'
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for element in $list
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do
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emacs --batch $element -f org-babel-tangle
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done
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43
src/mo_localization/break_spatial_sym.org
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src/mo_localization/break_spatial_sym.org
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! A small program to break the spatial symmetry of the MOs.
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! You have to defined your MO classes or set security_mo_class to false
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! with:
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! qp set orbital_optimization security_mo_class false
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! The default angle for the rotations is too big for this kind of
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! application, a value between 1e-3 and 1e-6 should break the spatial
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! symmetry with just a small change in the energy.
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#+BEGIN_SRC f90 :comments org :tangle break_spatial_sym.irp.f
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program break_spatial_sym
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!BEGIN_DOC
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! Break the symmetry of the MOs with a rotation
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!END_DOC
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implicit none
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kick_in_mos = .True.
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TOUCH kick_in_mos
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print*, 'Security mo_class:', security_mo_class
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! The default mo_classes are setted only if the MOs to localize are not specified
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if (security_mo_class .and. (dim_list_act_orb == mo_num .or. &
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dim_list_core_orb + dim_list_act_orb == mo_num)) then
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print*, 'WARNING'
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print*, 'You must set different mo_class with qp set_mo_class'
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print*, 'If you want to kick all the orbitals:'
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print*, 'qp set orbital_optimization security_mo_class false'
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print*, ''
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print*, 'abort'
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call abort
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endif
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call apply_pre_rotation
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end
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#+END_SRC
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64
src/mo_localization/debug_gradient_loc.org
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64
src/mo_localization/debug_gradient_loc.org
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#+BEGIN_SRC f90 :comments org :tangle debug_gradient_loc.irp.f
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program debug_gradient_loc
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!BEGIN_DOC
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! Check if the gradient is correct
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!END_DOC
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implicit none
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integer :: list_size, n
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integer, allocatable :: list(:)
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double precision, allocatable :: v_grad(:), v_grad2(:)
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double precision :: norm, max_elem, threshold, max_error
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integer :: i, nb_error
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threshold = 1d-12
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list = list_act
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list_size = dim_list_act_orb
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n = list_size*(list_size-1)/2
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allocate(v_grad(n),v_grad2(n))
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if (localization_method == 'boys') then
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print*,'Foster-Boys'
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call gradient_FB(n,list_size,list,v_grad,max_elem,norm)
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call gradient_FB_omp(n,list_size,list,v_grad2,max_elem,norm)
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elseif (localization_method == 'pipek') then
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print*,'Pipek-Mezey'
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call gradient_PM(n,list_size,list,v_grad,max_elem,norm)
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call gradient_PM(n,list_size,list,v_grad2,max_elem,norm)
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else
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print*,'Unknown localization_method, please select boys or pipek'
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call abort
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endif
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do i = 1, n
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print*,i,v_grad(i)
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enddo
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v_grad = v_grad - v_grad2
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nb_error = 0
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max_elem = 0d0
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do i = 1, n
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if (dabs(v_grad(i)) > threshold) then
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print*,v_grad(i)
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nb_error = nb_error + 1
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if (dabs(v_grad(i)) > max_elem) then
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max_elem = v_grad(i)
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endif
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endif
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enddo
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print*,'Threshold error', threshold
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print*, 'Nb error', nb_error
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print*,'Max error', max_elem
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deallocate(v_grad,v_grad2)
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end
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#+END_SRC
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64
src/mo_localization/debug_hessian_loc.org
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src/mo_localization/debug_hessian_loc.org
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#+BEGIN_SRC f90 :comments org :tangle debug_hessian_loc.irp.f
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program debug_hessian_loc
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!BEGIN_DOC
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! Check if the hessian is correct
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!END_DOC
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implicit none
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integer :: list_size, n
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integer, allocatable :: list(:)
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double precision, allocatable :: H(:,:), H2(:,:)
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double precision :: threshold, max_error, max_elem
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integer :: i, nb_error
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threshold = 1d-12
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list = list_act
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list_size = dim_list_act_orb
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n = list_size*(list_size-1)/2
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allocate(H(n,n),H2(n,n))
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if (localization_method == 'boys') then
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print*,'Foster-Boys'
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call hessian_FB(n,list_size,list,H)
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call hessian_FB_omp(n,list_size,list,H2)
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elseif(localization_method == 'pipek') then
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print*,'Pipek-Mezey'
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call hessian_PM(n,list_size,list,H)
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call hessian_PM(n,list_size,list,H2)
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else
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print*,'Unknown localization_method, please select boys or pipek'
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call abort
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endif
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do i = 1, n
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print*,i,H(i,i)
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enddo
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H = H - H2
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nb_error = 0
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max_elem = 0d0
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do i = 1, n
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if (dabs(H(i,i)) > threshold) then
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print*,H(i,i)
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nb_error = nb_error + 1
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if (dabs(H(i,i)) > max_elem) then
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max_elem = H(i,i)
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endif
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endif
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enddo
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print*,'Threshold error', threshold
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print*, 'Nb error', nb_error
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print*,'Max error', max_elem
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deallocate(H,H2)
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end
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#+END_SRC
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33
src/mo_localization/kick_the_mos.org
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src/mo_localization/kick_the_mos.org
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#+BEGIN_SRC f90 :comments org :tangle kick_the_mos.irp.f
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program kick_the_mos
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!BEGIN_DOC
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! To do a small rotation of the MOs
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!END_DOC
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implicit none
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kick_in_mos = .True.
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TOUCH kick_in_mos
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print*, 'Security mo_class:', security_mo_class
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! The default mo_classes are setted only if the MOs to localize are not specified
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if (security_mo_class .and. (dim_list_act_orb == mo_num .or. &
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dim_list_core_orb + dim_list_act_orb == mo_num)) then
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print*, 'WARNING'
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print*, 'You must set different mo_class with qp set_mo_class'
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print*, 'If you want to kick all the orbital:'
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print*, 'qp set Orbital_optimization security_mo_class false'
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print*, ''
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print*, 'abort'
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call abort
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endif
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call apply_pre_rotation
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end
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#+END_SRC
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2460
src/mo_localization/localization.org
Normal file
2460
src/mo_localization/localization.org
Normal file
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