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Merge pull request #247 from QuantumPackage/dev-stable
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Dev stable
This commit is contained in:
Anthony Scemama 2023-02-21 10:05:30 +01:00 committed by GitHub
commit 810b623743
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73 changed files with 9609 additions and 857 deletions
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57
.github/workflows/compilation.yml vendored Normal file
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@ -0,0 +1,57 @@
name: QP Compilation
on:
push:
branches:
- master
- dev-stable
pull_request:
branches:
- dev-stable
- master
jobs:
configuration:
runs-on: ubuntu-20.04
name: Dependencies
steps:
- name: install dependencies
run: |
sudo apt install gfortran gcc liblapack-dev libblas-dev wget python3 make m4 pkg-config
compilation:
name: Compilation
runs-on: ubuntu-20.04
steps:
- uses: actions/checkout@v3
- name: Restore configuration
id: restore
uses: actions/cache@v3
continue-on-error: false
with:
key: qp2-config
fail-on-cache-miss: true
path: |
external/opampack/
include/
lib/
lib64/
libexec/
restore-keys: qp2-
- name: Configuration
run: |
./configure -i ninja || :
./configure -i docopt || :
./configure -i resultsFile || :
./configure -i bats || :
./configure -c ./config/gfortran_debug.cfg
- name: Compilation
run: |
bash -c "source quantum_package.rc ; exec ninja"

66
.github/workflows/configuration.yml vendored Normal file
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@ -0,0 +1,66 @@
name: QP Configuration
on:
push:
branches:
- master
# - ci
pull_request:
branches:
- master
schedule:
- cron: "23 22 * * 6"
jobs:
configuration:
runs-on: ubuntu-20.04
name: Dependencies
steps:
- uses: actions/checkout@v3
- name: Install dependencies
run: |
sudo apt install gfortran gcc liblapack-dev libblas-dev wget python3 make m4 pkg-config
- name: zlib
run: |
./configure -i zlib || echo OK
- name: ninja
run: |
./configure -i ninja || echo OK
- name: zeromq
run: |
./configure -i zeromq || echo OK
- name: f77zmq
run: |
./configure -i f77zmq || echo OK
- name: gmp
run: |
./configure -i gmp || echo OK
- name: ocaml
run: |
./configure -i ocaml || echo OK
- name: docopt
run: |
./configure -i docopt || echo OK
- name: resultsFile
run: |
./configure -i resultsFile || echo OK
- name: bats
run: |
./configure -i bats || echo OK
- name: Final check
run: |
./configure -c config/gfortran_debug.cfg
- name: Cache
uses: actions/cache@v3
with:
key: qp2-config
path: |
external/opampack/
include/
lib/
lib64/
libexec/

14
RELEASE_NOTES.org
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@ -4,20 +4,20 @@
** Changes
- Introduced DFT-based basis set correction
- Use OpamPack for OCaml
- Configure adapted for ARM
- Added many types of integrals
- Accelerated four-index transformation
*** TODO: take from dev
- [ ] Added GTOs with complex exponent
- [ ] Added many types of integrals
- Updated version of f77-zmq
- Added transcorrelated SCF
- Added transcorrelated CIPSI
- Started to introduce shells in AOs
- Added ECMD UEG functional
- Introduced DFT-based basis set correction
- General davidson algorithm
- Use OpamPack for OCaml
- Configure adapted for ARM
*** Done
- General Davidson algorithm
* Version 2.2

2
VERSION
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@ -1 +1 @@
2.2.1
2.3.1

21
configure vendored
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@ -20,18 +20,6 @@ git submodule update
ARCHITECTURE=$(uname -m)
cd ${QP_ROOT}/external/qp2-dependencies
echo "Architecture: $ARCHITECTURE"
case $ARCHITECTURE in
aarch64)
git checkout arm64
;;
x86_64)
git checkout x86
;;
*)
echo "Unknown architecture. Using x86_64."
git checkout x86
;;
esac
cd ${QP_ROOT}
@ -209,7 +197,7 @@ for PACKAGE in ${PACKAGES} ; do
execute << EOF
rm -f "\${QP_ROOT}"/bin/ninja
tar -zxvf "\${QP_ROOT}"/external/qp2-dependencies/ninja.tar.gz
tar -zxvf "\${QP_ROOT}"/external/qp2-dependencies/${ARCHITECTURE}/ninja.tar.gz
mv ninja "\${QP_ROOT}"/bin/
EOF
@ -254,10 +242,13 @@ EOF
execute <<EOF
source "${QP_ROOT}"/quantum_package.rc
rm -rf "${QP_ROOT}"/external/opampack
cd "${QP_ROOT}"/external/
tar --gunzip --extract --file qp2-dependencies/opampack.tar.gz
tar --gunzip --extract --file qp2-dependencies/${ARCHITECTURE}/opampack.tar.gz
cd "${QP_ROOT}"/external/opampack
./install.sh
export OPAMROOT="${QP_ROOT}"/external/opampack/opamroot
eval \$("${QP_ROOT}"/external/opampack/opam env)
EOF
elif [[ ${PACKAGE} = bse ]] ; then
@ -357,7 +348,7 @@ if [[ ${ZLIB} = $(not_found) ]] ; then
fail
fi
OCAML=$(find_exe ocaml)
OCAML=$(find_exe ocamlc)
if [[ ${OCAML} = $(not_found) ]] ; then
error "OCaml (ocaml) compiler is not installed."
fail

2
external/ezfio vendored

@ -1 +1 @@
Subproject commit ed1df9f3c1f51752656ca98da5693a4119add05c
Subproject commit d5805497fa0ef30e70e055cde1ecec2963303e93

2
external/irpf90 vendored

@ -1 +1 @@
Subproject commit 33ca5e1018f3bbb5e695e6ee558f5dac0753b271
Subproject commit 0007f72f677fe7d61c5e1ed461882cb239517102

2
external/qp2-dependencies vendored

@ -1 +1 @@
Subproject commit f40bde0925808bbec0424b57bfcef1b26473a1c8
Subproject commit b8cd5815bce14c9b880e3c5ea3d5fc2652f5955c

8
include/.gitignore vendored
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@ -1,7 +1 @@
zmq.h
gmp.h
zconf.h
zconf.h
zlib.h
zmq_utils.h
f77_zmq_free.h
*

4
ocaml/Input_nuclei_by_hand.ml
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@ -84,7 +84,7 @@ end = struct
Ezfio.get_nuclei_nucl_coord()
|> Ezfio.flattened_ezfio
in
let zero = Point3d.of_string Units.Bohr "0. 0. 0." in
let zero = Point3d.of_string ~units:Units.Bohr "0. 0. 0." in
let result = Array.make nucl_num zero in
for i=0 to (nucl_num-1)
do
@ -218,7 +218,7 @@ Nuclear coordinates in xyz format (Angstroms) ::
and lines = Array.of_list lines
in
List.init (Nucl_number.to_int nucl_num) (fun i ->
Atom.of_string Units.Angstrom lines.(i))
Atom.of_string ~units:Units.Angstrom lines.(i))
end
| _ -> failwith "Error in xyz format"
in

3
scripts/.gitignore vendored
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@ -2,3 +2,6 @@
*.pyo
docopt.py
resultsFile/
verif_omp/a.out
src/*/Makefile
src/*/*/

30
scripts/compilation/qp_create_ninja
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@ -99,9 +99,20 @@ def ninja_create_env_variable(pwd_config_file):
l_string = ["builddir = {0}".format(os.path.dirname(ROOT_BUILD_NINJA)),
""]
for flag in ["FC", "FCFLAGS", "IRPF90", "IRPF90_FLAGS"]:
str_ = "{0} = {1}".format(flag, get_compilation_option(pwd_config_file,
flag))
for directory in [real_join(QP_SRC, m) for m in sorted(os.listdir(QP_SRC))]:
includefile = real_join(directory, flag)
try:
content = ""
with open(includefile,'r') as f:
content = f.read()
str_ += " "+content
except IOError:
pass
l_string.append(str_)
lib_lapack = get_compilation_option(pwd_config_file, "LAPACK_LIB")
@ -110,17 +121,20 @@ def ninja_create_env_variable(pwd_config_file):
str_lib = " ".join([lib_lapack, EZFIO_LIB, ZMQ_LIB, LIB, lib_usr])
# Read all LIB files in modules
libfile = "LIB"
try:
content = ""
with open(libfile,'r') as f:
content = f.read()
str_lib += " "+content
except IOError:
pass
for directory in [real_join(QP_SRC, m) for m in sorted(os.listdir(QP_SRC))]:
libfile = real_join(directory, "LIB")
try:
content = ""
with open(libfile,'r') as f:
content = f.read().replace('\n','')
str_lib += " "+content
except IOError:
pass
l_string.append("LIB = {0} ".format(str_lib))
l_string.append("CONFIG_FILE = {0}".format(pwd_config_file))
l_string.append("")
return l_string

11
src/.gitignore vendored Normal file
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@ -0,0 +1,11 @@
*
!README.rst
!*/
*/*
!*/*.*
*/*.o
*/build.ninja
*/ezfio_interface.irp.f
*/.gitignore
*/*.swp

4
src/ao_one_e_ints/pot_ao_ints.irp.f
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@ -80,6 +80,10 @@ BEGIN_PROVIDER [ double precision, ao_integrals_n_e, (ao_num,ao_num)]
IF (DO_PSEUDO) THEN
ao_integrals_n_e += ao_pseudo_integrals
ENDIF
IF(point_charges) THEN
ao_integrals_n_e += ao_integrals_pt_chrg
ENDIF
endif

108
src/ao_one_e_ints/pot_pt_charges.irp.f Normal file
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@ -0,0 +1,108 @@
BEGIN_PROVIDER [ double precision, ao_integrals_pt_chrg, (ao_num,ao_num)]
BEGIN_DOC
! Point charge-electron interaction, in the |AO| basis set.
!
! :math:`\langle \chi_i | -\sum_charge charge * \frac{1}{|r-R_charge|} | \chi_j \rangle`
!
! Notice the minus sign convention as it is supposed to be for electrons.
END_DOC
implicit none
integer :: num_A, num_B, power_A(3), power_B(3)
integer :: i, j, k, l, n_pt_in, m
double precision :: alpha, beta
double precision :: A_center(3),B_center(3),C_center(3)
double precision :: overlap_x,overlap_y,overlap_z,overlap,dx,NAI_pol_mult
ao_integrals_pt_chrg = 0.d0
! if (read_ao_integrals_pt_chrg) then
!
! call ezfio_get_ao_one_e_ints_ao_integrals_pt_chrg(ao_integrals_pt_chrg)
! print *, 'AO N-e integrals read from disk'
!
! else
! if(use_cosgtos) then
! !print *, " use_cosgtos for ao_integrals_pt_chrg ?", use_cosgtos
!
! do j = 1, ao_num
! do i = 1, ao_num
! ao_integrals_pt_chrg(i,j) = ao_integrals_pt_chrg_cosgtos(i,j)
! enddo
! enddo
!
! else
!$OMP PARALLEL &
!$OMP DEFAULT (NONE) &
!$OMP PRIVATE (i,j,k,l,m,alpha,beta,A_center,B_center,C_center,power_A,power_B,&
!$OMP num_A,num_B,Z,c,c1,n_pt_in) &
!$OMP SHARED (ao_num,ao_prim_num,ao_expo_ordered_transp,ao_power,ao_nucl,pts_charge_coord,ao_coef_normalized_ordered_transp,nucl_coord,&
!$OMP n_pt_max_integrals,ao_integrals_pt_chrg,n_pts_charge,pts_charge_z)
n_pt_in = n_pt_max_integrals
!$OMP DO SCHEDULE (dynamic)
do j = 1, ao_num
num_A = ao_nucl(j)
power_A(1:3)= ao_power(j,1:3)
A_center(1:3) = nucl_coord(num_A,1:3)
do i = 1, ao_num
num_B = ao_nucl(i)
power_B(1:3)= ao_power(i,1:3)
B_center(1:3) = nucl_coord(num_B,1:3)
do l=1,ao_prim_num(j)
alpha = ao_expo_ordered_transp(l,j)
do m=1,ao_prim_num(i)
beta = ao_expo_ordered_transp(m,i)
double precision :: c, c1
c = 0.d0
do k = 1, n_pts_charge
double precision :: Z
Z = pts_charge_z(k)
C_center(1:3) = pts_charge_coord(k,1:3)
c1 = NAI_pol_mult( A_center, B_center, power_A, power_B &
, alpha, beta, C_center, n_pt_in )
c = c - Z * c1
enddo
ao_integrals_pt_chrg(i,j) = ao_integrals_pt_chrg(i,j) &
+ ao_coef_normalized_ordered_transp(l,j) &
* ao_coef_normalized_ordered_transp(m,i) * c
enddo
enddo
enddo
enddo
!$OMP END DO
!$OMP END PARALLEL
! endif
! IF(do_pseudo) THEN
! ao_integrals_pt_chrg += ao_pseudo_integrals
! ENDIF
! endif
! if (write_ao_integrals_pt_chrg) then
! call ezfio_set_ao_one_e_ints_ao_integrals_pt_chrg(ao_integrals_pt_chrg)
! print *, 'AO N-e integrals written to disk'
! endif
END_PROVIDER

23
src/ao_two_e_ints/map_integrals.irp.f
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@ -142,7 +142,7 @@ subroutine ao_idx2_sq(i,j,ij)
ij=i*i
endif
end
subroutine idx2_tri_int(i,j,ij)
implicit none
integer, intent(in) :: i,j
@ -152,7 +152,7 @@ subroutine idx2_tri_int(i,j,ij)
q = min(i,j)
ij = q+ishft(p*p-p,-1)
end
subroutine ao_idx2_tri_key(i,j,ij)
use map_module
implicit none
@ -163,8 +163,8 @@ subroutine ao_idx2_tri_key(i,j,ij)
q = min(i,j)
ij = q+ishft(p*p-p,-1)
end
subroutine two_e_integrals_index_2fold(i,j,k,l,i1)
subroutine two_e_integrals_index_2fold(i,j,k,l,i1)
use map_module
implicit none
integer, intent(in) :: i,j,k,l
@ -176,7 +176,7 @@ subroutine two_e_integrals_index_2fold(i,j,k,l,i1)
call ao_idx2_tri_key(ik,jl,i1)
end
subroutine ao_idx2_sq_rev(i,k,ik)
subroutine ao_idx2_sq_rev(i,k,ik)
BEGIN_DOC
! reverse square compound index
END_DOC
@ -321,14 +321,15 @@ BEGIN_PROVIDER [ double precision, ao_integrals_cache, (0:64*64*64*64) ]
!$OMP END PARALLEL DO
END_PROVIDER
! ---
double precision function get_ao_two_e_integral(i,j,k,l,map) result(result)
double precision function get_ao_two_e_integral(i, j, k, l, map) result(result)
use map_module
implicit none
BEGIN_DOC
! Gets one AO bi-electronic integral from the AO map
! Gets one AO bi-electronic integral from the AO map in PHYSICIST NOTATION
!
! i,j,k,l in physicist notation <ij|kl>
! <1:k, 2:l |1:i, 2:j>
END_DOC
integer, intent(in) :: i,j,k,l
integer(key_kind) :: idx
@ -398,7 +399,7 @@ BEGIN_PROVIDER [ complex*16, ao_integrals_cache_periodic, (0:64*64*64*64) ]
tmp_im = 0.d0
integral = dcmplx(tmp_re,tmp_im)
endif
ii = l-ao_integrals_cache_min
ii = ior( shiftl(ii,6), k-ao_integrals_cache_min)
ii = ior( shiftl(ii,6), j-ao_integrals_cache_min)
@ -473,7 +474,7 @@ subroutine get_ao_two_e_integrals(j,k,l,sze,out_val)
BEGIN_DOC
! Gets multiple AO bi-electronic integral from the AO map .
! All i are retrieved for j,k,l fixed.
! physicist convention : <ij|kl>
! physicist convention : <ij|kl>
END_DOC
implicit none
integer, intent(in) :: j,k,l, sze
@ -502,7 +503,7 @@ subroutine get_ao_two_e_integrals_periodic(j,k,l,sze,out_val)
BEGIN_DOC
! Gets multiple AO bi-electronic integral from the AO map .
! All i are retrieved for j,k,l fixed.
! physicist convention : <ij|kl>
! physicist convention : <ij|kl>
END_DOC
implicit none
integer, intent(in) :: j,k,l, sze

1
src/ao_two_e_ints/two_e_integrals.irp.f
View File

@ -101,6 +101,7 @@ double precision function ao_two_e_integral(i,j,k,l)
endif
endif
end
double precision function ao_two_e_integral_schwartz_accel(i,j,k,l)

4
src/cipsi/cipsi.irp.f
View File

@ -70,8 +70,8 @@ subroutine run_cipsi
do while ( &
(N_det < N_det_max) .and. &
(sum(abs(pt2_data % pt2(1:N_states)) * state_average_weight(1:N_states)) > pt2_max) .and. &
(sum(abs(pt2_data % variance(1:N_states)) * state_average_weight(1:N_states)) > variance_max) .and. &
(maxval(abs(pt2_data % pt2(1:N_states))) > pt2_max) .and. &
(maxval(abs(pt2_data % variance(1:N_states))) > variance_max) .and. &
(correlation_energy_ratio <= correlation_energy_ratio_max) &
)
write(*,'(A)') '--------------------------------------------------------------------------------'

85
src/cipsi/pt2_stoch_routines.irp.f
View File

@ -131,7 +131,7 @@ subroutine ZMQ_pt2(E, pt2_data, pt2_data_err, relative_error, N_in)
PROVIDE psi_bilinear_matrix_transp_rows_loc psi_bilinear_matrix_transp_columns
PROVIDE psi_bilinear_matrix_transp_order psi_selectors_coef_transp psi_det_sorted
PROVIDE psi_det_hii selection_weight pseudo_sym
PROVIDE list_act list_inact list_core list_virt list_del seniority_max
PROVIDE n_act_orb n_inact_orb n_core_orb n_virt_orb n_del_orb seniority_max
PROVIDE excitation_beta_max excitation_alpha_max excitation_max
if (h0_type == 'CFG') then
@ -290,9 +290,9 @@ subroutine ZMQ_pt2(E, pt2_data, pt2_data_err, relative_error, N_in)
call set_multiple_levels_omp(.False.)
print '(A)', '========== ======================= ===================== ===================== ==========='
print '(A)', ' Samples Energy Variance Norm^2 Seconds'
print '(A)', '========== ======================= ===================== ===================== ==========='
print '(A)', '========== ==================== ================ ================ ================ ============= ==========='
print '(A)', ' Samples Energy PT2 Variance Norm^2 Convergence Seconds'
print '(A)', '========== ==================== ================ ================ ================ ============= ==========='
PROVIDE global_selection_buffer
@ -316,7 +316,8 @@ subroutine ZMQ_pt2(E, pt2_data, pt2_data_err, relative_error, N_in)
call end_parallel_job(zmq_to_qp_run_socket, zmq_socket_pull, 'pt2')
call set_multiple_levels_omp(.True.)
print '(A)', '========== ======================= ===================== ===================== ==========='
print '(A)', '========== ==================== ================ ================ ================ ============= ==========='
do k=1,N_states
pt2_overlap(pt2_stoch_istate,k) = pt2_data % overlap(k,pt2_stoch_istate)
@ -414,6 +415,17 @@ subroutine pt2_collector(zmq_socket_pull, E, relative_error, pt2_data, pt2_data_
double precision :: rss
double precision, external :: memory_of_double, memory_of_int
character(len=20) :: format_str1, str_error1, format_str2, str_error2
character(len=20) :: format_str3, str_error3, format_str4, str_error4
character(len=20) :: format_value1, format_value2, format_value3, format_value4
character(len=20) :: str_value1, str_value2, str_value3, str_value4
character(len=20) :: str_conv
double precision :: value1, value2, value3, value4
double precision :: error1, error2, error3, error4
integer :: size1,size2,size3,size4
double precision :: conv_crit
sending =.False.
rss = memory_of_int(pt2_n_tasks_max*2+N_det_generators*2)
@ -537,14 +549,60 @@ subroutine pt2_collector(zmq_socket_pull, E, relative_error, pt2_data, pt2_data_
if ((time - time1 > 1.d0) .or. (n==N_det_generators)) then
time1 = time
print '(I10, X, F12.6, X, G10.3, X, F10.6, X, G10.3, X, F10.6, X, G10.3, X, F10.1)', c, &
pt2_data % pt2(pt2_stoch_istate) +E, &
pt2_data_err % pt2(pt2_stoch_istate), &
pt2_data % variance(pt2_stoch_istate), &
pt2_data_err % variance(pt2_stoch_istate), &
pt2_data % overlap(pt2_stoch_istate,pt2_stoch_istate), &
pt2_data_err % overlap(pt2_stoch_istate,pt2_stoch_istate), &
time-time0
value1 = pt2_data % pt2(pt2_stoch_istate) + E
error1 = pt2_data_err % pt2(pt2_stoch_istate)
value2 = pt2_data % pt2(pt2_stoch_istate)
error2 = pt2_data_err % pt2(pt2_stoch_istate)
value3 = pt2_data % variance(pt2_stoch_istate)
error3 = pt2_data_err % variance(pt2_stoch_istate)
value4 = pt2_data % overlap(pt2_stoch_istate,pt2_stoch_istate)
error4 = pt2_data_err % overlap(pt2_stoch_istate,pt2_stoch_istate)
! Max size of the values (FX.Y) with X=size
size1 = 15
size2 = 12
size3 = 12
size4 = 12
! To generate the format: number(error)
call format_w_error(value1,error1,size1,8,format_value1,str_error1)
call format_w_error(value2,error2,size2,8,format_value2,str_error2)
call format_w_error(value3,error3,size3,8,format_value3,str_error3)
call format_w_error(value4,error4,size4,8,format_value4,str_error4)
! value > string with the right format
write(str_value1,'('//format_value1//')') value1
write(str_value2,'('//format_value2//')') value2
write(str_value3,'('//format_value3//')') value3
write(str_value4,'('//format_value4//')') value4
! Convergence criterion
conv_crit = dabs(pt2_data_err % pt2(pt2_stoch_istate)) / &
(1.d-20 + dabs(pt2_data % pt2(pt2_stoch_istate)) )
write(str_conv,'(G10.3)') conv_crit
write(*,'(I10,X,X,A20,X,A16,X,A16,X,A16,X,A12,X,F10.1)') c,&
adjustl(adjustr(str_value1)//'('//str_error1(1:1)//')'),&
adjustl(adjustr(str_value2)//'('//str_error2(1:1)//')'),&
adjustl(adjustr(str_value3)//'('//str_error3(1:1)//')'),&
adjustl(adjustr(str_value4)//'('//str_error4(1:1)//')'),&
adjustl(str_conv),&
time-time0
! Old print
!print '(I10, X, F12.6, X, G10.3, X, F10.6, X, G10.3, X, F10.6, X, G10.3, X, F10.1,1pE16.6,1pE16.6)', c, &
! pt2_data % pt2(pt2_stoch_istate) +E, &
! pt2_data_err % pt2(pt2_stoch_istate), &
! pt2_data % variance(pt2_stoch_istate), &
! pt2_data_err % variance(pt2_stoch_istate), &
! pt2_data % overlap(pt2_stoch_istate,pt2_stoch_istate), &
! pt2_data_err % overlap(pt2_stoch_istate,pt2_stoch_istate), &
! time-time0, &
! pt2_data % pt2(pt2_stoch_istate), &
! dabs(pt2_data_err % pt2(pt2_stoch_istate)) / &
! (1.d-20 + dabs(pt2_data % pt2(pt2_stoch_istate)) )
if (stop_now .or. ( &
(do_exit .and. (dabs(pt2_data_err % pt2(pt2_stoch_istate)) / &
(1.d-20 + dabs(pt2_data % pt2(pt2_stoch_istate)) ) <= relative_error))) ) then
@ -844,6 +902,7 @@ END_PROVIDER
if (tooth_width == 0.d0) then
tooth_width = max(1.d-15,sum(tilde_w(pt2_n_0(t):pt2_n_0(t+1))))
endif
ASSERT(tooth_width > 0.d0)
do i=pt2_n_0(t)+1, pt2_n_0(t+1)
pt2_w(i) = tilde_w(i) * pt2_W_T / tooth_width
end do

55
src/cipsi/run_pt2_slave.irp.f
View File

@ -31,11 +31,12 @@ subroutine run_pt2_slave(thread,iproc,energy)
double precision, intent(in) :: energy(N_states_diag)
integer, intent(in) :: thread, iproc
if (N_det > 100000 ) then
call run_pt2_slave_large(thread,iproc,energy)
else
call run_pt2_slave_small(thread,iproc,energy)
endif
call run_pt2_slave_large(thread,iproc,energy)
! if (N_det > 100000 ) then
! call run_pt2_slave_large(thread,iproc,energy)
! else
! call run_pt2_slave_small(thread,iproc,energy)
! endif
end
subroutine run_pt2_slave_small(thread,iproc,energy)
@ -66,6 +67,7 @@ subroutine run_pt2_slave_small(thread,iproc,energy)
double precision, external :: memory_of_double, memory_of_int
integer :: bsize ! Size of selection buffers
! logical :: sending
allocate(task_id(pt2_n_tasks_max), task(pt2_n_tasks_max))
allocate(pt2_data(pt2_n_tasks_max), i_generator(pt2_n_tasks_max), subset(pt2_n_tasks_max))
@ -83,6 +85,7 @@ subroutine run_pt2_slave_small(thread,iproc,energy)
buffer_ready = .False.
n_tasks = 1
! sending = .False.
done = .False.
do while (.not.done)
@ -116,13 +119,14 @@ subroutine run_pt2_slave_small(thread,iproc,energy)
do k=1,n_tasks
call pt2_alloc(pt2_data(k),N_states)
b%cur = 0
! double precision :: time2
! call wall_time(time2)
!double precision :: time2
!call wall_time(time2)
call select_connected(i_generator(k),energy,pt2_data(k),b,subset(k),pt2_F(i_generator(k)))
! call wall_time(time1)
! print *, i_generator(1), time1-time2, n_tasks, pt2_F(i_generator(1))
!call wall_time(time1)
!print *, i_generator(1), time1-time2, n_tasks, pt2_F(i_generator(1))
enddo
call wall_time(time1)
!print *, '-->', i_generator(1), time1-time0, n_tasks
integer, external :: tasks_done_to_taskserver
if (tasks_done_to_taskserver(zmq_to_qp_run_socket,worker_id,task_id,n_tasks) == -1) then
@ -160,11 +164,6 @@ end subroutine
subroutine run_pt2_slave_large(thread,iproc,energy)
use selection_types
use f77_zmq
BEGIN_DOC
! This subroutine can miss important determinants when the PT2 is completely
! computed. It should be called only for large workloads where the PT2 is
! interrupted before the end
END_DOC
implicit none
double precision, intent(in) :: energy(N_states_diag)
@ -190,12 +189,8 @@ subroutine run_pt2_slave_large(thread,iproc,energy)
integer :: bsize ! Size of selection buffers
logical :: sending
double precision :: time_shift
PROVIDE global_selection_buffer global_selection_buffer_lock
call random_number(time_shift)
time_shift = time_shift*15.d0
zmq_to_qp_run_socket = new_zmq_to_qp_run_socket()
@ -213,9 +208,6 @@ subroutine run_pt2_slave_large(thread,iproc,energy)
sending = .False.
done = .False.
double precision :: time0, time1
call wall_time(time0)
time0 = time0+time_shift
do while (.not.done)
integer, external :: get_tasks_from_taskserver
@ -242,28 +234,25 @@ subroutine run_pt2_slave_large(thread,iproc,energy)
ASSERT (b%N == bsize)
endif
double precision :: time0, time1
call wall_time(time0)
call pt2_alloc(pt2_data,N_states)
b%cur = 0
call select_connected(i_generator,energy,pt2_data,b,subset,pt2_F(i_generator))
call wall_time(time1)
integer, external :: tasks_done_to_taskserver
if (tasks_done_to_taskserver(zmq_to_qp_run_socket,worker_id,task_id,n_tasks) == -1) then
done = .true.
endif
call sort_selection_buffer(b)
call wall_time(time1)
! if (time1-time0 > 15.d0) then
call omp_set_lock(global_selection_buffer_lock)
global_selection_buffer%mini = b%mini
call merge_selection_buffers(b,global_selection_buffer)
b%cur=0
call omp_unset_lock(global_selection_buffer_lock)
call wall_time(time0)
! endif
call push_pt2_results_async_recv(zmq_socket_push,b%mini,sending)
if ( iproc == 1 .or. i_generator < 100 .or. done) then
call omp_set_lock(global_selection_buffer_lock)
global_selection_buffer%mini = b%mini
call merge_selection_buffers(b,global_selection_buffer)
b%cur=0
call omp_unset_lock(global_selection_buffer_lock)
if ( iproc == 1 ) then
call omp_set_lock(global_selection_buffer_lock)
call push_pt2_results_async_send(zmq_socket_push, (/i_generator/), (/pt2_data/), global_selection_buffer, (/task_id/), 1,sending)
global_selection_buffer%cur = 0

5
src/cipsi/selection.irp.f
View File

@ -571,7 +571,6 @@ subroutine fill_buffer_double(i_generator, sp, h1, h2, bannedOrb, banned, fock_d
double precision, external :: diag_H_mat_elem_fock
double precision :: E_shift
double precision :: s_weight(N_states,N_states)
logical, external :: is_in_wavefunction
PROVIDE dominant_dets_of_cfgs N_dominant_dets_of_cfgs
do jstate=1,N_states
do istate=1,N_states
@ -751,7 +750,10 @@ subroutine fill_buffer_double(i_generator, sp, h1, h2, bannedOrb, banned, fock_d
if (delta_E < 0.d0) then
tmp = -tmp
endif
!e_pert(istate) = alpha_h_psi * alpha_h_psi / (E0(istate) - Hii)
e_pert(istate) = 0.5d0 * (tmp - delta_E)
if (dabs(alpha_h_psi) > 1.d-4) then
coef(istate) = e_pert(istate) / alpha_h_psi
else
@ -864,6 +866,7 @@ subroutine fill_buffer_double(i_generator, sp, h1, h2, bannedOrb, banned, fock_d
!!!BEGIN_DEBUG
! ! To check if the pt2 is taking determinants already in the wf
! if (is_in_wavefunction(det(N_int,1),N_int)) then
! logical, external :: is_in_wavefunction
! print*, 'A determinant contributing to the pt2 is already in'
! print*, 'the wave function:'
! call print_det(det(N_int,1),N_int)

2
src/cipsi/slave_cipsi.irp.f
View File

@ -311,7 +311,7 @@ subroutine run_slave_main
if (mpi_master) then
print *, 'Running PT2'
endif
!$OMP PARALLEL PRIVATE(i) NUM_THREADS(nproc_target)
!$OMP PARALLEL PRIVATE(i) NUM_THREADS(nproc_target+1)
i = omp_get_thread_num()
call run_pt2_slave(0,i,pt2_e0_denominator)
!$OMP END PARALLEL

4
src/cipsi/stochastic_cipsi.irp.f
View File

@ -69,8 +69,8 @@ subroutine run_stochastic_cipsi
do while ( &
(N_det < N_det_max) .and. &
(sum(abs(pt2_data % pt2(1:N_states)) * state_average_weight(1:N_states)) > pt2_max) .and. &
(sum(abs(pt2_data % variance(1:N_states)) * state_average_weight(1:N_states)) > variance_max) .and. &
(maxval(abs(pt2_data % pt2(1:N_states))) > pt2_max) .and. &
(maxval(abs(pt2_data % variance(1:N_states))) > variance_max) .and. &
(correlation_energy_ratio <= correlation_energy_ratio_max) &
)
write(*,'(A)') '--------------------------------------------------------------------------------'

35
src/dft_utils_func/rho_ab_to_rho_tot.irp.f
View File

@ -66,10 +66,27 @@ subroutine v_rho_oc_to_v_rho_ab(v_rho_o,v_rho_c,v_rho_a,v_rho_b)
END_DOC
double precision, intent(in) :: v_rho_o,v_rho_c
double precision, intent(out) :: v_rho_a,v_rho_b
! print*,'in v_rho_oc_to_v_rho_ab'
! print*, v_rho_c , v_rho_o
v_rho_a = v_rho_c + v_rho_o
v_rho_b = v_rho_c - v_rho_o
end
subroutine v_grad_rho_ab_to_v_grad_rho_oc(v_grad_rho_a_2,v_grad_rho_b_2,v_grad_rho_a_b,v_grad_rho_o_2,v_grad_rho_c_2,v_grad_rho_o_c)
implicit none
double precision, intent(in) :: v_grad_rho_a_2,v_grad_rho_b_2,v_grad_rho_a_b
double precision, intent(out) :: v_grad_rho_o_2,v_grad_rho_c_2,v_grad_rho_o_c
BEGIN_DOC
! convert (v_grad_rho_a_2, v_grad_rho_b_2, v_grad_rho_a.grad_rho_b)
!
! to (v_grad_rho_c_2, v_grad_rho_o_2, v_grad_rho_o.grad_rho_c)
!
! rho_c = total density, rho_o spin density
END_DOC
v_grad_rho_c_2 = 0.25d0 * (v_grad_rho_a_2 + v_grad_rho_b_2 + v_grad_rho_a_b)
v_grad_rho_o_2 = 0.25d0 * (v_grad_rho_a_2 + v_grad_rho_b_2 - v_grad_rho_a_b)
v_grad_rho_o_c = 0.25d0 * (2d0 * v_grad_rho_a_2 - 2d0 * v_grad_rho_b_2 )
end
subroutine v_grad_rho_oc_to_v_grad_rho_ab(v_grad_rho_o_2,v_grad_rho_c_2,v_grad_rho_o_c,v_grad_rho_a_2,v_grad_rho_b_2,v_grad_rho_a_b)
@ -88,21 +105,3 @@ subroutine v_grad_rho_oc_to_v_grad_rho_ab(v_grad_rho_o_2,v_grad_rho_c_2,v_grad_r
v_grad_rho_a_b = -2d0 * v_grad_rho_o_2 + 2d0 * v_grad_rho_c_2
end

3
src/dft_utils_in_r/dm_in_r.irp.f
View File

@ -45,6 +45,8 @@
call density_and_grad_alpha_beta_and_all_aos_and_grad_aos_at_r(r,dm_a,dm_b, dm_a_grad, dm_b_grad, aos_array, grad_aos_array)
! alpha/beta density
dm_a(istate) = max(dm_a(istate),1.d-12)
dm_b(istate) = max(dm_b(istate),1.d-12)
one_e_dm_and_grad_alpha_in_r(4,i,istate) = dm_a(istate)
one_e_dm_and_grad_beta_in_r(4,i,istate) = dm_b(istate)
@ -80,6 +82,7 @@
enddo
enddo
!$OMP END PARALLEL DO
print*,'density and gradients provided'
END_PROVIDER

33
src/hartree_fock/10.hf.bats
View File

@ -18,6 +18,39 @@ function run() {
}
function run_pt_charges() {
thresh=1.e-5
cp ${QP_ROOT}/src/nuclei/write_pt_charges.py .
cat > hcn.xyz << EOF
3
HCN molecule
C 0.0 0.0 0.0
H 0.0 0.0 1.064
N 0.0 0.0 -1.156
EOF
cat > hcn_charges.xyz << EOF
0.5 2.0 0.0 0.0
0.5 -2.0 0.0 0.0
EOF
rm -rf hcn.ezfio
qp create_ezfio -b def2-svp hcn.xyz
qp run scf
mv hcn_charges.xyz hcn.ezfio_point_charges.xyz
python write_pt_charges.py hcn.ezfio
qp set nuclei point_charges True
qp run scf | tee hcn.ezfio.pt_charges.out
energy="$(ezfio get hartree_fock energy)"
rm -rf hcn.ezfio
good=-92.76613324421798
eq $energy $good $thresh
}
@test "point charges" {
run_pt_charges
}
@test "B-B" { # 3s
run b2_stretched.ezfio -48.9950585434279
}

1
src/hartree_fock/scf.irp.f
View File

@ -49,7 +49,6 @@ subroutine create_guess
if (.not.exists) then
mo_label = 'Guess'
if (mo_guess_type == "HCore") then
mo_coef = ao_ortho_lowdin_coef
call restore_symmetry(ao_num,mo_num,mo_coef,size(mo_coef,1),1.d-10)
TOUCH mo_coef
call mo_as_eigvectors_of_mo_matrix(mo_one_e_integrals, &

12
src/mo_two_e_erf_ints/map_integrals_erf.irp.f
View File

@ -235,11 +235,11 @@ subroutine get_mo_two_e_integrals_erf_ij(k,l,sze,out_array,map)
logical :: integral_is_in_map
if (key_kind == 8) then
call i8radix_sort(hash,iorder,kk,-1)
call i8sort(hash,iorder,kk)
else if (key_kind == 4) then
call iradix_sort(hash,iorder,kk,-1)
call isort(hash,iorder,kk)
else if (key_kind == 2) then
call i2radix_sort(hash,iorder,kk,-1)
call i2sort(hash,iorder,kk)
endif
call map_get_many(mo_integrals_erf_map, hash, tmp_val, kk)
@ -290,11 +290,11 @@ subroutine get_mo_two_e_integrals_erf_i1j1(k,l,sze,out_array,map)
logical :: integral_is_in_map
if (key_kind == 8) then
call i8radix_sort(hash,iorder,kk,-1)
call i8sort(hash,iorder,kk)
else if (key_kind == 4) then
call iradix_sort(hash,iorder,kk,-1)
call isort(hash,iorder,kk)
else if (key_kind == 2) then
call i2radix_sort(hash,iorder,kk,-1)
call i2sort(hash,iorder,kk)
endif
call map_get_many(mo_integrals_erf_map, hash, tmp_val, kk)

2
src/mo_two_e_ints/core_quantities.irp.f
View File

@ -53,7 +53,7 @@ BEGIN_PROVIDER [ double precision, h_core_ri, (mo_num, mo_num) ]
enddo
do k=1,mo_num
do i=1,mo_num
h_core_ri(i,j) = h_core_ri(i,j) - 0.5 * big_array_exchange_integrals(k,i,j)
h_core_ri(i,j) = h_core_ri(i,j) - 0.5d0 * big_array_exchange_integrals(k,i,j)
enddo
enddo
enddo

124
src/mo_two_e_ints/mo_bi_integrals.irp.f
View File

@ -53,7 +53,11 @@ BEGIN_PROVIDER [ logical, mo_two_e_integrals_in_map ]
! call four_idx_novvvv
call four_idx_novvvv_old
else
call add_integrals_to_map(full_ijkl_bitmask_4)
if (dble(ao_num)**4 * 32.d-9 < dble(qp_max_mem)) then
call four_idx_dgemm
else
call add_integrals_to_map(full_ijkl_bitmask_4)
endif
endif
call wall_time(wall_2)
@ -77,6 +81,94 @@ BEGIN_PROVIDER [ logical, mo_two_e_integrals_in_map ]
END_PROVIDER
subroutine four_idx_dgemm
implicit none
integer :: p,q,r,s,i,j,k,l
double precision, allocatable :: a1(:,:,:,:)
double precision, allocatable :: a2(:,:,:,:)
allocate (a1(ao_num,ao_num,ao_num,ao_num))
print *, 'Getting AOs'
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(q,r,s)
do s=1,ao_num
do r=1,ao_num
do q=1,ao_num
call get_ao_two_e_integrals(q,r,s,ao_num,a1(1,q,r,s))
enddo
enddo
enddo
!$OMP END PARALLEL DO
print *, '1st transformation'
! 1st transformation
allocate (a2(ao_num,ao_num,ao_num,mo_num))
call dgemm('T','N', (ao_num*ao_num*ao_num), mo_num, ao_num, 1.d0, a1, ao_num, mo_coef, ao_num, 0.d0, a2, (ao_num*ao_num*ao_num))
! 2nd transformation
print *, '2nd transformation'
deallocate (a1)
allocate (a1(ao_num,ao_num,mo_num,mo_num))
call dgemm('T','N', (ao_num*ao_num*mo_num), mo_num, ao_num, 1.d0, a2, ao_num, mo_coef, ao_num, 0.d0, a1, (ao_num*ao_num*mo_num))
! 3rd transformation
print *, '3rd transformation'
deallocate (a2)
allocate (a2(ao_num,mo_num,mo_num,mo_num))
call dgemm('T','N', (ao_num*mo_num*mo_num), mo_num, ao_num, 1.d0, a1, ao_num, mo_coef, ao_num, 0.d0, a2, (ao_num*mo_num*mo_num))
! 4th transformation
print *, '4th transformation'
deallocate (a1)
allocate (a1(mo_num,mo_num,mo_num,mo_num))
call dgemm('T','N', (mo_num*mo_num*mo_num), mo_num, ao_num, 1.d0, a2, ao_num, mo_coef, ao_num, 0.d0, a1, (mo_num*mo_num*mo_num))
deallocate (a2)
integer :: n_integrals, size_buffer
integer(key_kind) , allocatable :: buffer_i(:)
real(integral_kind), allocatable :: buffer_value(:)
size_buffer = min(ao_num*ao_num*ao_num,16000000)
!$OMP PARALLEL DEFAULT(SHARED) PRIVATE(i,j,k,l,buffer_value,buffer_i,n_integrals)
allocate ( buffer_i(size_buffer), buffer_value(size_buffer) )
n_integrals = 0
!$OMP DO
do l=1,mo_num
do k=1,mo_num
do j=1,l
do i=1,k
if (abs(a1(i,j,k,l)) < mo_integrals_threshold) then
cycle
endif
n_integrals += 1
buffer_value(n_integrals) = a1(i,j,k,l)
!DIR$ FORCEINLINE
call mo_two_e_integrals_index(i,j,k,l,buffer_i(n_integrals))
if (n_integrals == size_buffer) then
call map_append(mo_integrals_map, buffer_i, buffer_value, n_integrals)
n_integrals = 0
endif
enddo
enddo
enddo
enddo
!$OMP END DO
call map_append(mo_integrals_map, buffer_i, buffer_value, n_integrals)
deallocate(buffer_i, buffer_value)
!$OMP END PARALLEL
deallocate (a1)
call map_unique(mo_integrals_map)
integer*8 :: get_mo_map_size, mo_map_size
mo_map_size = get_mo_map_size()
end subroutine
subroutine add_integrals_to_map(mask_ijkl)
use bitmasks
@ -153,24 +245,26 @@ subroutine add_integrals_to_map(mask_ijkl)
return
endif
size_buffer = min(ao_num*ao_num*ao_num,16000000)
call wall_time(wall_1)
size_buffer = min(ao_num*ao_num*ao_num,8000000)
print*, 'Buffers : ', 8.*(mo_num*(n_j)*(n_k+1) + mo_num+&
ao_num+ao_num*ao_num+ size_buffer*3)/(1024*1024), 'MB / core'
double precision :: accu_bis
accu_bis = 0.d0
call wall_time(wall_1)
!$OMP PARALLEL PRIVATE(l1,k1,j1,i1,i2,i3,i4,i,j,k,l,c, ii1,kmax, &
!$OMP two_e_tmp_0_idx, two_e_tmp_0, two_e_tmp_1,two_e_tmp_2,two_e_tmp_3,&
!$OMP buffer_i,buffer_value,n_integrals,wall_2,i0,j0,k0,l0, &
!$OMP wall_0,thread_num,accu_bis) &
!$OMP wall_0,thread_num) &
!$OMP DEFAULT(NONE) &
!$OMP SHARED(size_buffer,ao_num,mo_num,n_i,n_j,n_k,n_l, &
!$OMP mo_coef_transp, &
!$OMP mo_coef_transp_is_built, list_ijkl, &
!$OMP mo_coef_is_built, wall_1, &
!$OMP mo_coef,mo_integrals_threshold,mo_integrals_map)
thread_num = 0
!$ thread_num = omp_get_thread_num()
n_integrals = 0
wall_0 = wall_1
allocate(two_e_tmp_3(mo_num, n_j, n_k), &
@ -181,8 +275,6 @@ subroutine add_integrals_to_map(mask_ijkl)
buffer_i(size_buffer), &
buffer_value(size_buffer) )
thread_num = 0
!$ thread_num = omp_get_thread_num()
!$OMP DO SCHEDULE(guided)
do l1 = 1,ao_num
two_e_tmp_3 = 0.d0
@ -340,10 +432,10 @@ subroutine add_integrals_to_map(mask_ijkl)
!$OMP END DO NOWAIT
deallocate (two_e_tmp_1,two_e_tmp_2,two_e_tmp_3)
integer :: index_needed
call insert_into_mo_integrals_map(n_integrals,buffer_i,buffer_value,&
real(mo_integrals_threshold,integral_kind))
if (n_integrals > 0) then