mirror of
https://github.com/QuantumPackage/qp2.git
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Add print_ci_vector in tools (#11)
* Fixed energies of non-expected s2 * Moved diag_algorithm in Davdison * Fixed travis * Added print_ci_vector * Documentation * Cleaned qp_set_mo_class.ml * Removed Core in taskserver
This commit is contained in:
Anthony Scemama
Thomas Applencourt
parent
ca4f8ebdca
commit
347e918a4a
@ -1,8 +1,5 @@
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open Core
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open Qptypes
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module StringHashtbl = Hashtbl.Make(String)
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type pub_state =
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| Waiting
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| Running of string
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@ -29,15 +26,15 @@ type t =
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progress_bar : Progress_bar.t option ;
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running : bool;
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accepting_clients : bool;
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data : string StringHashtbl.t;
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data : (string, string) Hashtbl.t;
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}
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let debug_env =
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match Sys.getenv "QP_TASK_DEBUG" with
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| Some x -> x <> ""
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| None -> false
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try
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Sys.getenv "QP_TASK_DEBUG"; true
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with Not_found -> false
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let debug str =
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@ -64,7 +61,7 @@ let bind_socket ~socket_type ~socket ~port =
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Zmq.Socket.bind socket @@ Printf.sprintf "tcp://*:%d" port;
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loop (-1)
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with
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| Unix.Unix_error _ -> (Time.pause @@ Time.Span.of_sec 1. ; loop (i-1) )
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| Unix.Unix_error _ -> (Unix.sleep 1 ; loop (i-1) )
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| other_exception -> raise other_exception
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in loop 60
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@ -77,28 +74,34 @@ let hostname = lazy (
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)
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external get_ipv4_address_for_interface : string -> string =
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"get_ipv4_address_for_interface" ;;
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let ip_address = lazy (
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match Sys.getenv "QP_NIC" with
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let interface =
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try Some (Sys.getenv "QP_NIC")
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with Not_found -> None
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in
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match interface with
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| None ->
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begin
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try
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let host =
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Lazy.force hostname
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|> Unix.Inet_addr.of_string_or_getbyname
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|> Unix.Inet_addr.to_string
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|> Unix.gethostbyname
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in
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Unix.string_of_inet_addr host.h_addr_list.(0);
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with
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| Unix.Unix_error _ ->
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failwith "Unable to find IP address from host name."
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end
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| Some interface ->
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begin
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try
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ok_exn Linux_ext.get_ipv4_address_for_interface interface
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with
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| Unix.Unix_error _ ->
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Lazy.force hostname
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|> Unix.Inet_addr.of_string_or_getbyname
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|> Unix.Inet_addr.to_string
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end
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let result = get_ipv4_address_for_interface interface in
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if String.sub result 0 5 = "error" then
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Printf.sprintf "Unable to use network interface %s" interface
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|> failwith
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else
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result
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)
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@ -209,7 +212,7 @@ let end_job msg program_state rep_socket pair_socket =
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address_inproc = None;
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running = true;
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accepting_clients = false;
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data = StringHashtbl.create ();
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data = Hashtbl.create 23;
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}
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and wait n =
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@ -335,8 +338,10 @@ let del_task msg program_state rep_socket =
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and success () =
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let queue =
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List.fold ~f:(fun queue task_id -> Queuing_system.del_task ~task_id queue)
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~init:program_state.queue task_ids
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List.fold_left
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(fun queue task_id -> Queuing_system.del_task ~task_id queue)
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program_state.queue
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task_ids
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in
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let accepting_clients =
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(Queuing_system.number_of_queued queue > Queuing_system.number_of_clients queue)
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@ -383,10 +388,11 @@ let add_task msg program_state rep_socket =
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let result =
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let new_queue, new_bar =
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List.fold ~f:(fun (queue, bar) task ->
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List.fold_left (fun (queue, bar) task ->
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Queuing_system.add_task ~task queue,
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increment_progress_bar bar)
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~init:(program_state.queue, program_state.progress_bar) tasks
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(program_state.queue, program_state.progress_bar)
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tasks
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in
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{ program_state with
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queue = new_queue;
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@ -547,10 +553,11 @@ let task_done msg program_state rep_socket =
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and success () =
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let new_queue, new_bar =
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List.fold ~f:(fun (queue, bar) task_id ->
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List.fold_left (fun (queue, bar) task_id ->
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Queuing_system.end_task ~task_id ~client_id queue,
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increment_progress_bar bar)
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~init:(program_state.queue, program_state.progress_bar) task_ids
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(program_state.queue, program_state.progress_bar)
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task_ids
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in
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let accepting_clients =
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@ -593,7 +600,7 @@ let put_data msg rest_of_msg program_state rep_socket =
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in
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let success () =
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StringHashtbl.set program_state.data ~key ~data:value ;
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Hashtbl.add program_state.data key value ;
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Message.PutDataReply (Message.PutDataReply_msg.create ())
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|> Message.to_string
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|> Zmq.Socket.send rep_socket;
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@ -623,9 +630,8 @@ let get_data msg program_state rep_socket =
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let success () =
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let value =
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match StringHashtbl.find program_state.data key with
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| Some value -> value
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| None -> "\000"
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try Hashtbl.find program_state.data key with
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| Not_found -> "\000"
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in
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Message.GetDataReply (Message.GetDataReply_msg.create ~value)
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|> Message.to_string_list
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@ -677,13 +683,16 @@ let abort program_state rep_socket =
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aux [] queue 1
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in
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let queue =
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List.fold ~f:(fun queue task_id ->
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Queuing_system.end_task ~task_id ~client_id queue)
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~init:queue tasks
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List.fold_left
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(fun queue task_id -> Queuing_system.end_task ~task_id ~client_id queue)
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queue
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tasks
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in
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let queue =
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List.fold ~f:(fun queue task_id -> Queuing_system.del_task ~task_id queue)
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~init:queue tasks
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List.fold_left
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(fun queue task_id -> Queuing_system.del_task ~task_id queue)
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queue
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tasks
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in
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let queue =
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Queuing_system.del_client ~client_id queue
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@ -777,7 +786,7 @@ let run ~port =
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address_inproc = None;
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progress_bar = None ;
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accepting_clients = false;
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data = StringHashtbl.create ();
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data = Hashtbl.create 23;
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}
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in
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@ -7,7 +7,7 @@ type t =
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progress_bar : Progress_bar.t option ;
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running : bool;
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accepting_clients : bool;
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data : (string, string) Core.Hashtbl.t ;
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data : (string, string) Hashtbl.t ;
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}
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@ -1,3 +1,6 @@
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true: package(core,cryptokit,zmq,str,ppx_sexp_conv,ppx_deriving,getopt)
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true: thread
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false: profile
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<*byte> : linkdep(c_bindings.o), custom
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<*.native>: linkdep(c_bindings.o)
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69
ocaml/c_bindings.c
Normal file
69
ocaml/c_bindings.c
Normal file
@ -0,0 +1,69 @@
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#include <caml/mlvalues.h>
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#include <caml/memory.h>
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#include <caml/alloc.h>
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#include <caml/custom.h>
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#include <caml/threads.h>
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#include <string.h>
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/* Adapted from
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https://github.com/monadbobo/ocaml-core/blob/master/base/core/lib/linux_ext_stubs.c
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*/
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#include <unistd.h>
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#include <sys/ioctl.h>
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#include <net/if.h>
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#include <sys/socket.h>
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#include <netinet/in.h>
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#include <arpa/inet.h>
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CAMLprim value get_ipv4_address_for_interface(value v_interface)
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{
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CAMLparam1(v_interface);
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struct ifreq ifr;
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int fd = -1;
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value res;
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char* error = NULL;
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memset(&ifr, 0, sizeof(ifr));
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ifr.ifr_addr.sa_family = AF_INET;
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/* [ifr] is already initialized to zero, so it doesn't matter if the
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incoming string is too long, and [strncpy] fails to add a \0. */
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strncpy(ifr.ifr_name, String_val(v_interface), IFNAMSIZ - 1);
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caml_enter_blocking_section();
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fd = socket(AF_INET, SOCK_DGRAM, 0);
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if (fd == -1)
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error = "error: couldn't allocate socket";
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else {
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if (ioctl(fd, SIOCGIFADDR, &ifr) < 0)
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error = "error: ioctl(fd, SIOCGIFADDR, ...) failed";
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(void) close(fd);
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}
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caml_leave_blocking_section();
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if (error == NULL) {
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/* This is weird but doing the usual casting causes errors when using
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* the new gcc on CentOS 6. This solution was picked up on Red Hat's
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* bugzilla or something. It also works to memcpy a sockaddr into
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* a sockaddr_in. This is faster hopefully.
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*/
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union {
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struct sockaddr sa;
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struct sockaddr_in sain;
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} u;
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u.sa = ifr.ifr_addr;
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res = caml_copy_string(inet_ntoa(u.sain.sin_addr));
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}
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else
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res = caml_copy_string(error);
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CAMLreturn(res);
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}
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@ -7,6 +7,7 @@ dispatch begin function
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| After_rules ->
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begin
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flag ["ocaml";"compile";"native";"gprof"] (S [ A "-p"]);
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pdep ["link"] "linkdep" (fun param -> [param]);
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end
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| _ -> ()
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end
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@ -1,11 +1,10 @@
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open Core
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open Qptypes
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let basis () =
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let ezfio_filename =
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Sys.argv.(1)
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in
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if (not (Sys.file_exists_exn ezfio_filename)) then
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if (not (Sys.file_exists ezfio_filename)) then
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failwith "Error reading EZFIO file";
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Ezfio.set_file ezfio_filename;
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let basis =
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@ -22,7 +21,7 @@ let mo () =
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let ezfio_filename =
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Sys.argv.(1)
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in
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if (not (Sys.file_exists_exn ezfio_filename)) then
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if (not (Sys.file_exists ezfio_filename)) then
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failwith "Error reading EZFIO file";
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Ezfio.set_file ezfio_filename;
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let mo_coef =
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@ -39,7 +38,7 @@ let psi_det () =
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let ezfio_filename =
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Sys.argv.(1)
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in
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if (not (Sys.file_exists_exn ezfio_filename)) then
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if (not (Sys.file_exists ezfio_filename)) then
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failwith "Error reading EZFIO file";
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Ezfio.set_file ezfio_filename;
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let psi_det =
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@ -1,6 +1,5 @@
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open Qputils
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open Qptypes
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open Core
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(*
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* Command-line arguments
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@ -46,7 +45,7 @@ let set ~core ~inact ~act ~virt ~del =
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let mo_class =
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Array.init mo_num ~f:(fun i -> None)
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Array.init mo_num (fun i -> None)
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in
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(* Check input data *)
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@ -113,7 +112,8 @@ let set ~core ~inact ~act ~virt ~del =
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and av = Excitation.create_single act virt
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in
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let single_excitations = [ ia ; aa ; av ]
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|> List.map ~f:Excitation.(fun x ->
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|> List.map (fun x ->
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let open Excitation in
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match x with
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| Single (x,y) ->
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( MO_class.to_bitlist n_int (Hole.to_mo_class x),
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@ -128,7 +128,8 @@ let set ~core ~inact ~act ~virt ~del =
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Excitation.double_of_singles aa aa ;
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Excitation.double_of_singles aa av ;
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Excitation.double_of_singles av av ]
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|> List.map ~f:Excitation.(fun x ->
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|> List.map (fun x ->
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let open Excitation in
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match x with
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| Single _ -> assert false
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| Double (x,y,z,t) ->
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@ -146,19 +147,20 @@ let set ~core ~inact ~act ~virt ~del =
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and extract_hole2 (_,_,h,_) = h
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and extract_particle2 (_,_,_,p) = p
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in
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let init = Bitlist.zero n_int in
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let result = [
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List.map ~f:extract_hole single_excitations
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|> List.fold ~init:(Bitlist.zero n_int) ~f:Bitlist.or_operator ;
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List.map ~f:extract_particle single_excitations
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|> List.fold ~init:(Bitlist.zero n_int) ~f:Bitlist.or_operator ;
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List.map ~f:extract_hole1 double_excitations
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|> List.fold ~init:(Bitlist.zero n_int) ~f:Bitlist.or_operator ;
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List.map ~f:extract_particle1 double_excitations
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|> List.fold ~init:(Bitlist.zero n_int) ~f:Bitlist.or_operator ;
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List.map ~f:extract_hole2 double_excitations
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|> List.fold ~init:(Bitlist.zero n_int) ~f:Bitlist.or_operator ;
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List.map ~f:extract_particle2 double_excitations
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|> List.fold ~init:(Bitlist.zero n_int) ~f:Bitlist.or_operator ;
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List.map extract_hole single_excitations
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|> List.fold_left Bitlist.or_operator init;
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List.map extract_particle single_excitations
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|> List.fold_left Bitlist.or_operator init;
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List.map extract_hole1 double_excitations
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|> List.fold_left Bitlist.or_operator init;
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List.map extract_particle1 double_excitations
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|> List.fold_left Bitlist.or_operator init;
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List.map extract_hole2 double_excitations
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|> List.fold_left Bitlist.or_operator init;
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List.map extract_particle2 double_excitations
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|> List.fold_left Bitlist.or_operator init;
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]
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in
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@ -167,7 +169,8 @@ let set ~core ~inact ~act ~virt ~del =
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*)
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(* Write masks *)
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let result = List.map ~f:(fun x ->
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let result =
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List.map (fun x ->
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let y = Bitlist.to_int64_list x in y@y )
|
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result
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|> List.concat
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@ -194,7 +197,7 @@ let set ~core ~inact ~act ~virt ~del =
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let data =
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Array.to_list mo_class
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|> List.map ~f:(fun x -> match x with
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|> List.map (fun x -> match x with
|
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|None -> assert false
|
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| Some x -> MO_class.to_string x
|
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)
|
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@ -276,42 +279,6 @@ let run ~q ?(core="[]") ?(inact="[]") ?(act="[]") ?(virt="[]") ?(del="[]") ezfio
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set ~core ~inact ~act ~virt ~del
|
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|
||||
|
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let ezfio_file =
|
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let failure filename =
|
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eprintf "'%s' is not an EZFIO file.\n%!" filename;
|
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exit 1
|
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in
|
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Command.Spec.Arg_type.create
|
||||
(fun filename ->
|
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match Sys.is_directory filename with
|
||||
| `Yes ->
|
||||
begin
|
||||
match Sys.is_file (filename ^ "/.version") with
|
||||
| `Yes -> filename
|
||||
| _ -> failure filename
|
||||
end
|
||||
| _ -> failure filename
|
||||
)
|
||||
|
||||
|
||||
let default range =
|
||||
let failure filename =
|
||||
eprintf "'%s' is not a regular file.\n%!" filename;
|
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exit 1
|
||||
in
|
||||
Command.Spec.Arg_type.create
|
||||
(fun filename ->
|
||||
match Sys.is_directory filename with
|
||||
| `Yes ->
|
||||
begin
|
||||
match Sys.is_file (filename^"/.version") with
|
||||
| `Yes -> filename
|
||||
| _ -> failure filename
|
||||
end
|
||||
| _ -> failure filename
|
||||
)
|
||||
|
||||
|
||||
|
||||
let () =
|
||||
let open Command_line in
|
||||
|
||||
@ -33,7 +33,7 @@ subroutine get_s2(key_i,key_j,Nint,s2)
|
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implicit none
|
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use bitmasks
|
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BEGIN_DOC
|
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! Returns <S^2>
|
||||
! Returns $\langle S^2 \rangle - S_z^2 S_z$
|
||||
END_DOC
|
||||
integer, intent(in) :: Nint
|
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integer(bit_kind), intent(in) :: key_i(Nint,2)
|
||||
|
||||
@ -24,33 +24,33 @@
|
||||
|
||||
do j=1,elec_beta_num
|
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! F-K
|
||||
do i=1,elec_beta_num
|
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do i=1,elec_beta_num !CC
|
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Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j))&
|
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- (Fock_matrix_mo_beta(i,j) - Fock_matrix_mo_alpha(i,j))
|
||||
enddo
|
||||
! F+K/2
|
||||
do i=elec_beta_num+1,elec_alpha_num
|
||||
do i=elec_beta_num+1,elec_alpha_num !CA
|
||||
Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j))&
|
||||
+ 0.5d0*(Fock_matrix_mo_beta(i,j) - Fock_matrix_mo_alpha(i,j))
|
||||
enddo
|
||||
! F
|
||||
do i=elec_alpha_num+1, mo_num
|
||||
do i=elec_alpha_num+1, mo_num !CV
|
||||
Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j))
|
||||
enddo
|
||||
enddo
|
||||
|
||||
do j=elec_beta_num+1,elec_alpha_num
|
||||
! F+K/2
|
||||
do i=1,elec_beta_num
|
||||
do i=1,elec_beta_num !AC
|
||||
Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j))&
|
||||
+ 0.5d0*(Fock_matrix_mo_beta(i,j) - Fock_matrix_mo_alpha(i,j))
|
||||
enddo
|
||||
! F
|
||||
do i=elec_beta_num+1,elec_alpha_num
|
||||
do i=elec_beta_num+1,elec_alpha_num !AA
|
||||
Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j))
|
||||
enddo
|
||||
! F-K/2
|
||||
do i=elec_alpha_num+1, mo_num
|
||||
do i=elec_alpha_num+1, mo_num !AV
|
||||
Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j))&
|
||||
- 0.5d0*(Fock_matrix_mo_beta(i,j) - Fock_matrix_mo_alpha(i,j))
|
||||
enddo
|
||||
@ -58,16 +58,16 @@
|
||||
|
||||
do j=elec_alpha_num+1, mo_num
|
||||
! F
|
||||
do i=1,elec_beta_num
|
||||
do i=1,elec_beta_num !VC
|
||||
Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j))
|
||||
enddo
|
||||
! F-K/2
|
||||
do i=elec_beta_num+1,elec_alpha_num
|
||||
do i=elec_beta_num+1,elec_alpha_num !VA
|
||||
Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j))&
|
||||
- 0.5d0*(Fock_matrix_mo_beta(i,j) - Fock_matrix_mo_alpha(i,j))
|
||||
enddo
|
||||
! F+K
|
||||
do i=elec_alpha_num+1,mo_num
|
||||
do i=elec_alpha_num+1,mo_num !VV
|
||||
Fock_matrix_mo(i,j) = 0.5d0*(Fock_matrix_mo_alpha(i,j)+Fock_matrix_mo_beta(i,j)) &
|
||||
+ (Fock_matrix_mo_beta(i,j) - Fock_matrix_mo_alpha(i,j))
|
||||
enddo
|
||||
|
||||
@ -1,7 +1,7 @@
|
||||
BEGIN_PROVIDER [double precision, SCF_density_matrix_ao_alpha, (ao_num,ao_num) ]
|
||||
implicit none
|
||||
BEGIN_DOC
|
||||
! S^{-1}.P_alpha.S^{-1}
|
||||
! $C.C^t$ over $\alpha$ MOs
|
||||
END_DOC
|
||||
|
||||
call dgemm('N','T',ao_num,ao_num,elec_alpha_num,1.d0, &
|
||||
@ -14,7 +14,7 @@ END_PROVIDER
|
||||
BEGIN_PROVIDER [ double precision, SCF_density_matrix_ao_beta, (ao_num,ao_num) ]
|
||||
implicit none
|
||||
BEGIN_DOC
|
||||
! S^{-1}.P_beta.S^{-1}
|
||||
! $C.C^t$ over $\beta$ MOs
|
||||
END_DOC
|
||||
|
||||
call dgemm('N','T',ao_num,ao_num,elec_beta_num,1.d0, &
|
||||
@ -27,7 +27,7 @@ END_PROVIDER
|
||||
BEGIN_PROVIDER [ double precision, SCF_density_matrix_ao, (ao_num,ao_num) ]
|
||||
implicit none
|
||||
BEGIN_DOC
|
||||
! S^{-1}.P.S^{-1} where P = C.C^t
|
||||
! Sum of $\alpha$ and $\beta$ density matrices
|
||||
END_DOC
|
||||
ASSERT (size(SCF_density_matrix_ao,1) == size(SCF_density_matrix_ao_alpha,1))
|
||||
if (elec_alpha_num== elec_beta_num) then
|
||||
|
||||
35
src/tools/print_ci_vectors.irp.f
Normal file
35
src/tools/print_ci_vectors.irp.f
Normal file
@ -0,0 +1,35 @@
|
||||
program print_wf
|
||||
implicit none
|
||||
BEGIN_DOC
|
||||
! Print the ground state wave function stored in the |EZFIO| directory
|
||||
! in the intermediate normalization.
|
||||
!
|
||||
! It also prints a lot of information regarding the excitation
|
||||
! operators from the reference determinant ! and a first-order
|
||||
! perturbative analysis of the wave function.
|
||||
!
|
||||
! If the wave function strongly deviates from the first-order analysis,
|
||||
! something funny is going on :)
|
||||
END_DOC
|
||||
|
||||
|
||||
! this has to be done in order to be sure that N_det, psi_det and
|
||||
! psi_coef are the wave function stored in the |EZFIO| directory.
|
||||
read_wf = .True.
|
||||
touch read_wf
|
||||
call routine
|
||||
end
|
||||
|
||||
subroutine routine
|
||||
implicit none
|
||||
integer :: i,k
|
||||
integer :: degree
|
||||
do i = 1, N_det
|
||||
print *, 'Determinant ', i
|
||||
call debug_det(psi_det(1,1,i),N_int)
|
||||
print '(4E20.12,X)', (psi_coef(i,k), k=1,N_states)
|
||||
print *, ''
|
||||
print *, ''
|
||||
enddo
|
||||
|
||||
end
|
||||
Loading…
Reference in New Issue
Block a user