updated configure

configure

@@ -3,8 +3,6 @@
 # Quantum Package configuration script
 #
 
-TEMP=$(getopt -o c:i:h -l config:,install:,help -n $0 -- "$@") || exit 1
-eval set -- "$TEMP"
 
 export QP_ROOT="$( cd "$(dirname "$0")" ; pwd -P )"
 echo "QP_ROOT="$QP_ROOT
@@ -14,24 +12,9 @@ unset CCXX
 # Force GCC instead of ICC for dependencies
 export CC=gcc
 
-
+# Download submodules
-# /!\ When updating version, update also etc files
+git submodule init
-
+git submodule update
-EZFIO_TGZ="EZFIO-v2.0.3.tar.gz"
-BATS_URL="https://github.com/bats-core/bats-core/archive/v1.1.0.tar.gz"
-BUBBLE_URL="https://github.com/projectatomic/bubblewrap/releases/download/v0.3.3/bubblewrap-0.3.3.tar.xz"
-DOCOPT_URL="https://github.com/docopt/docopt/archive/0.6.2.tar.gz"
-BSE_URL="https://github.com/MolSSI-BSE/basis_set_exchange/archive/v0.8.11.tar.gz"
-F77ZMQ_URL="https://github.com/scemama/f77_zmq/archive/v4.2.5.tar.gz"
-GMP_URL="ftp://ftp.gnu.org/gnu/gmp/gmp-6.1.2.tar.bz2"
-IRPF90_URL="https://gitlab.com/scemama/irpf90/-/archive/v2.0.0/irpf90-v2.0.0.tar.gz"
-LIBCAP_URL="https://git.kernel.org/pub/scm/linux/kernel/git/morgan/libcap.git/snapshot/libcap-2.25.tar.gz"
-NINJA_URL="https://github.com/ninja-build/ninja/releases/download/v1.8.2/ninja-linux.zip"
-OCAML_URL="https://raw.githubusercontent.com/ocaml/opam/master/shell/install.sh"
-RESULTS_URL="https://gitlab.com/scemama/resultsFile/-/archive/v2.0/resultsFile-v2.0.tar.gz"
-ZEROMQ_URL="https://github.com/zeromq/libzmq/releases/download/v4.2.5/zeromq-4.2.5.tar.gz"
-ZLIB_URL="https://www.zlib.net/zlib-1.2.11.tar.gz"
-
 
 function help()
 {
@@ -39,17 +22,17 @@ function help()
 Quantum Package configuration script.
 
 Usage:
-  $(basename $0) -c <file>    | --config=<file>
+  $(basename $0) -c <file>    
-  $(basename $0) -h           | --help
+  $(basename $0) -h           
-  $(basename $0) -i <package> | --install=<package>
+  $(basename $0) -i <package> 
 
 Options:
-  -c, --config=<file>      Define a COMPILATION configuration file,
+  -c  <file>    Define a COMPILATION configuration file,
-                           in "${QP_ROOT}/config/".
+                in "${QP_ROOT}/config/".
-  -h, --help               Print the HELP message
+  -h            Print the HELP message
-  -i, --install=<package>  INSTALL <package>. Use at your OWN RISK:
+  -i <package>  INSTALL <package>. Use at your OWN RISK:
-                           no support will be provided for the installation of
+                no support will be provided for the installation of
-                           dependencies.
+                dependencies.
 
 Example:
   ./$(basename $0) -c config/gfortran.cfg
@@ -83,33 +66,30 @@ function execute () {
 }
 
 PACKAGES=""
-OCAML_PACKAGES="ocamlbuild cryptokit zmq sexplib ppx_sexp_conv ppx_deriving getopt"
 
-while true ; do
+
-    case "$1" in
+while getopts "d:c:i:h" c ; do
-        -c|--config)
+    case "$c" in
-            case "$2" in
+        c)
+            case "$OPTARG" in
                 "") help ; break;;
-                *) if [[ -f $2 ]] ; then
+                *) if [[ -f $OPTARG ]] ; then
-                      CONFIG="$2"
+                      CONFIG="$OPTARG"
                    else
-                      error "error: configuration file $2 not found."
+                      error "error: configuration file $OPTARG not found."
                       exit 1
                    fi
-            esac
+            esac;;
-            shift 2;;
+        i)
-        -i|--install)
+            case "$OPTARG" in
-            case "$2" in
                 "") help ; break;;
-                *) PACKAGES="${PACKAGE} $2"
+                *) PACKAGES="${PACKAGE} $OPTARG"
-            esac
+            esac;;
-            shift 2;;
+        h)
-        -h|-help|--help)
             help
             exit 0;;
-        --) shift ; break ;;
         *)
-            error $(basename $0)": unknown option $1, try --help"
+            error $(basename $0)": unknown option $c, try -h for help"
             exit 2;;
     esac
 done
@@ -126,23 +106,13 @@ source quantum_package.rc
 function fail() {
         echo "You can try to install it using the -i option."
         echo "Please refer to INSTALL.rst to install the missing dependencies."
-        exit 1
+        exit -1
 }
 
 function success() {
         echo ""
         echo "Configuration successful."
-        exit 1
+        exit 0
-}
-
-function download() {
-        echo "Downloading $1"
-        echo ""
-        printf "\e[0;34m"
-        wget --no-check-certificate $1 --output-document=$2 || error "Unable to download $1"
-        printf "\e[m"
-        echo "Saved dowloaded file as $2"
-        echo ""
 }
 
 function not_found() {
@@ -177,16 +147,15 @@ function find_dir() {
         fi
 }
 
+# Make program believe stdin is a tty
+function faketty() {
+  script -qfc "$(printf "%q " "$@")" /dev/null
+}
 
-# Extract EZFIO if needed
+# Install IRPF90 if needed
-EZFIO=$(find_dir "${QP_ROOT}"/external/ezfio)
+IRPF90=$(find_exe irpf90)
-if [[ ${EZFIO} = $(not_found) ]] ; then
+if [[ ${IRPF90} = $(not_found) ]] ; then
-            execute << EOF
+        make -C ${QP_ROOT}/external/irpf90
-              cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file ${EZFIO_TGZ}
-              rm -rf ezfio
-              mv EZFIO ezfio || mv EZFIO-v*/ ezfio
-EOF
 fi
 
 
@@ -211,7 +180,7 @@ if [[ "${PACKAGES}.x" != ".x" ]] ; then
 fi
 
 if [[ ${PACKAGES} = all ]] ; then
-        PACKAGES="zlib ninja irpf90 zeromq f77zmq gmp libcap bwrap ocaml ezfio docopt resultsFile bats"
+        PACKAGES="zlib ninja zeromq f77zmq gmp ocaml docopt resultsFile bats"
 fi
 
 
@@ -219,159 +188,72 @@ for PACKAGE in ${PACKAGES} ; do
 
     if [[ ${PACKAGE} = ninja ]] ; then
 
-            download ${NINJA_URL} "${QP_ROOT}"/external/ninja.zip
             execute << EOF
               rm -f "\${QP_ROOT}"/bin/ninja
-              unzip "\${QP_ROOT}"/external/ninja.zip -d "\${QP_ROOT}"/bin
+              unzip "\${QP_ROOT}"/external/qp2-dependencies/ninja-linux.zip -d "\${QP_ROOT}"/bin
 EOF
 
 
     elif [[ ${PACKAGE} = gmp ]] ; then
 
-            download ${GMP_URL} "${QP_ROOT}"/external/gmp.tar.bz2
             execute << EOF
               cd "\${QP_ROOT}"/external
-              tar --bzip2 --extract --file gmp.tar.bz2
+              tar --bzip2 --extract --file qp2-dependencies/gmp-6.1.2.tar.bz2
-              rm gmp.tar.bz2
+              cd gmp-6.1.2
-              cd gmp*
               ./configure --prefix=$QP_ROOT && make -j 8
-              make install
+              make -j 8 install
 EOF
 
-    elif [[ ${PACKAGE} = libcap ]] ; then
-
-            download ${LIBCAP_URL} "${QP_ROOT}"/external/libcap.tar.gz
-            execute << EOF
-              cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file libcap.tar.gz
-              rm libcap.tar.gz
-              cd libcap-*/libcap
-              prefix=$QP_ROOT make install
-EOF
-
-    elif [[ ${PACKAGE} = bwrap ]] ; then
-
-            download ${BUBBLE_URL} "${QP_ROOT}"/external/bwrap.tar.xz
-            execute << EOF
-              cd "\${QP_ROOT}"/external
-              tar --xz --extract --file bwrap.tar.xz
-              rm bwrap.tar.xz
-              cd bubblewrap*
-              ./configure --prefix=$QP_ROOT && make -j 8
-              make install-exec-am
-EOF
-
-    elif [[ ${PACKAGE} = irpf90 ]] ; then
-
-            # When changing version of irpf90, don't forget to update etc/irpf90.rc
-            download ${IRPF90_URL} "${QP_ROOT}"/external/irpf90.tar.gz
-            execute << EOF
-              cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file irpf90.tar.gz
-              rm irpf90.tar.gz
-              cd irpf90-*
-              make
-EOF
-
-
     elif [[ ${PACKAGE} = zeromq ]] ; then
 
-            download ${ZEROMQ_URL} "${QP_ROOT}"/external/zeromq.tar.gz
             execute << EOF
               export CC=gcc
               export CXX=g++
               cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file zeromq.tar.gz
+              tar --gunzip --extract --file qp2-dependencies/zeromq-4.2.5.tar.gz
-              rm zeromq.tar.gz
               cd zeromq-*
               ./configure --prefix="\$QP_ROOT" --without-libsodium --enable-libunwind=no
-              make
+              make -j 8
               make install
 EOF
 
 
     elif [[ ${PACKAGE} = f77zmq ]] ; then
 
-            download ${F77ZMQ_URL} "${QP_ROOT}"/external/f77_zmq.tar.gz
             execute << EOF
               cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file f77_zmq.tar.gz
+              tar --gunzip --extract --file qp2-dependencies/f77-zmq-4.3.2.tar.gz
-              rm f77_zmq.tar.gz
+              cd f77-zmq-*
-              cd f77_zmq-*
+              ./configure --prefix=\$QP_ROOT
               export ZMQ_H="\$QP_ROOT"/include/zmq.h
-              make
+              make && make check && make install
-              cp libf77zmq.a "\${QP_ROOT}"/lib
-              cp libf77zmq.so "\${QP_ROOT}"/lib
-              cp f77_zmq_free.h "\${QP_ROOT}"/include
 EOF
 
 
     elif [[ ${PACKAGE} = ocaml ]] ; then
 
-            download ${OCAML_URL} "${QP_ROOT}"/external/opam_installer.sh
+         execute <<EOF
-
+            source "${QP_ROOT}"/quantum_package.rc
-            if [[ -n ${TRAVIS} ]] ; then
+            cd "${QP_ROOT}"/external/
-                # Special commands for Travis CI
+            tar --gunzip --extract --file qp2-dependencies/ocaml-bundle_x86.tar.gz
-                chmod +x "${QP_ROOT}"/external/opam_installer.sh
+            echo "" | ./ocaml-bundle/bootstrap.sh "${QP_ROOT}"
-                rm --force ${QP_ROOT}/bin/opam
+            ./ocaml-bundle/configure.sh "${QP_ROOT}"
-                if [[ -n ${NO_CACHE} ]] ; then
+            echo "" | ./ocaml-bundle/compile.sh "${QP_ROOT}"
-                        rm -rf ${HOME}/.opam
-                fi
-                export OPAMROOT=${HOME}/.opam
-                cat << EOF | bash ${QP_ROOT}/external/opam_installer.sh --no-backup
-${QP_ROOT}/bin
-
-
-
 EOF
 
-                rm ${QP_ROOT}/external/opam_installer.sh
-#                source ${OPAMROOT}/opam-init/init.sh > /dev/null 2> /dev/null || true
-#
-#                opam switch create ocaml-base-compiler.4.10.0
-                opam init --verbose --yes --compiler=4.10.0 --disable-sandboxing
-
-                eval $(opam env)
-                opam install -y ${OCAML_PACKAGES}  || exit 1
-
-            else
-                # Conventional commands
-                execute << EOF
-                  chmod +x "${QP_ROOT}"/external/opam_installer.sh
-                  "${QP_ROOT}"/external/opam_installer.sh --no-backup
-EOF
-                execute << EOF
-                  rm --force ${QP_ROOT}/bin/opam
-                  export OPAMROOT=${OPAMROOT:-${QP_ROOT}/external/opam}
-                  echo ${QP_ROOT}/bin \
-                  | sh ${QP_ROOT}/external/opam_installer.sh
-EOF
-                rm ${QP_ROOT}/external/opam_installer.sh
-#                source ${OPAMROOT}/opam-init/init.sh > /dev/null 2> /dev/null || true
-#                opam switch create ocaml-base-compiler.4.10.0     || exit 1
-
-                opam init --verbose --yes --compiler=4.10.0 --disable-sandboxing
-                eval $(opam env)
-                execute << EOF
-                  opam install -y \${OCAML_PACKAGES}  || exit 1
-EOF
-            fi
-
-
     elif [[ ${PACKAGE} = bse ]] ; then
 
-            download ${BSE_URL} "${QP_ROOT}"/external/bse.tar.gz
             execute << EOF
               cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file bse.tar.gz
+              tar --gunzip --extract --file qp2-dependencies/bse-v0.8.11.tar.gz
               pip install -e basis_set_exchange-*
+EOF
+
     elif [[ ${PACKAGE} = zlib ]] ; then
 
-            download ${ZLIB_URL} "${QP_ROOT}"/external/zlib.tar.gz
             execute << EOF
               cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file zlib.tar.gz
+              tar --gunzip --extract --file qp2-dependencies/zlib-1.2.11.tar.gz
-              rm zlib.tar.gz && \
               cd zlib-*/
               ./configure --prefix=${QP_ROOT} && \
               make && make install
@@ -380,35 +262,32 @@ EOF
 
     elif [[ ${PACKAGE} = docopt ]] ; then
 
-            download ${DOCOPT_URL} "${QP_ROOT}"/external/docopt.tar.gz
             execute << EOF
               cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file docopt.tar.gz
+              tar --gunzip --extract --file qp2-dependencies/docopt-0.6.2.tar.gz
               mv docopt-*/docopt.py "\${QP_ROOT}/external/Python"
-              rm --recursive --force -- docopt-*/ docopt.tar.gz
 EOF
 
 
     elif [[ ${PACKAGE} = resultsFile ]] ; then
 
-            download ${RESULTS_URL} "${QP_ROOT}"/external/resultsFile.tar.gz
             execute << EOF
               cd "\${QP_ROOT}"/external
-              tar --gunzip --extract --file resultsFile.tar.gz
+              tar --gunzip --extract --file qp2-dependencies/resultsFile-v2.3.tar.gz
               mv resultsFile-*/resultsFile "\${QP_ROOT}/external/Python/"
-              rm --recursive --force resultsFile-* resultsFile.tar.gz
 EOF
 
     elif [[ ${PACKAGE} = bats ]] ; then
 
-            download ${BATS_URL} "${QP_ROOT}"/external/bats.tar.gz
             execute << EOF
               cd "\${QP_ROOT}"/external
-              tar -zxf bats.tar.gz
+              tar -zxf qp2-dependencies/bats-v1.1.0.tar.gz
               ( cd bats-core-1.1.0/ ; ./install.sh \${QP_ROOT})
-              rm --recursive --force -- bats-core-1.1.0 \  "\${QP_ROOT}"/external/bats.tar.gz
 EOF
 
+    else
+        error "${PACKAGE} unknown."
+        fail
     fi
 
 
@@ -422,12 +301,6 @@ if [[ ${NINJA} = $(not_found) ]] ; then
         fail
 fi
 
-IRPF90=$(find_exe irpf90)
-if [[ ${IRPF90} = $(not_found) ]] ; then
-        error "IRPf90 (irpf90) is not installed."
-        fail
-fi
-
 ZEROMQ=$(find_lib -lzmq)
 if [[ ${ZEROMQ} = $(not_found) ]] ; then
         error "ZeroMQ (zeromq) is not installed."
@@ -446,24 +319,6 @@ if [[ ${ZLIB} = $(not_found) ]] ; then
         fail
 fi
 
-LIBCAP=$(find_lib -lcap)
-if [[ ${LIBCAP} = $(not_found) ]] ; then
-        error "Libcap (libcap) is not installed."
-        fail
-fi
-
-BWRAP=$(find_exe bwrap)
-if [[ ${BWRAP} = $(not_found) ]] ; then
-        error "Bubblewrap (bwrap) is not installed."
-        fail
-fi
-
-OPAM=$(find_exe opam)
-if [[ ${OPAM} = $(not_found) ]] ; then
-        error "OPAM (ocaml) package manager is not installed."
-        fail
-fi
-
 OCAML=$(find_exe ocaml)
 if [[ ${OCAML} = $(not_found) ]] ; then
         error "OCaml (ocaml) compiler is not installed."