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1b48f30c27
63
config/gfortran_debug_mkl.cfg
Normal file
63
config/gfortran_debug_mkl.cfg
Normal file
@ -0,0 +1,63 @@
|
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# Common flags
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##############
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#
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# -ffree-line-length-none : Needed for IRPF90 which produces long lines
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# -lblas -llapack : Link with libblas and liblapack libraries provided by the system
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# -I . : Include the curent directory (Mandatory)
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#
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# --ninja : Allow the utilisation of ninja. (Mandatory)
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# --align=32 : Align all provided arrays on a 32-byte boundary
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#
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#
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[COMMON]
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FC : gfortran -g -ffree-line-length-none -I . -fPIC -std=legacy
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LAPACK_LIB : -I${MKLROOT}/include -L${MKLROOT}/lib/intel64 -Wl,--no-as-needed -lmkl_gf_lp64 -lmkl_core -lpthread -lm -ldl -lmkl_gnu_thread -lgomp -fopenmp
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IRPF90 : irpf90
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IRPF90_FLAGS : --ninja --align=32 --assert -DSET_NESTED
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# Global options
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################
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#
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# 1 : Activate
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||||
# 0 : Deactivate
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#
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[OPTION]
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MODE : DEBUG ; [ OPT | PROFILE | DEBUG ] : Chooses the section below
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CACHE : 0 ; Enable cache_compile.py
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OPENMP : 1 ; Append OpenMP flags
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# Optimization flags
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####################
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#
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# -Ofast : Disregard strict standards compliance. Enables all -O3 optimizations.
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# It also enables optimizations that are not valid
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# for all standard-compliant programs. It turns on
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# -ffast-math and the Fortran-specific
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# -fno-protect-parens and -fstack-arrays.
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[OPT]
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FCFLAGS : -Ofast
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# Profiling flags
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#################
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#
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[PROFILE]
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FC : -p -g
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FCFLAGS : -Ofast
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# Debugging flags
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#################
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#
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# -fcheck=all : Checks uninitialized variables, array subscripts, etc...
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# -g : Extra debugging information
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#
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[DEBUG]
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#FCFLAGS : -g -msse4.2 -fcheck=all -Waliasing -Wampersand -Wconversion -Wsurprising -Wintrinsics-std -Wno-tabs -Wintrinsic-shadow -Wline-truncation -Wreal-q-constant -Wuninitialized -fbacktrace -ffpe-trap=zero,overflow,underflow -finit-real=nan
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FCFLAGS : -g -mavx -fcheck=all -Waliasing -Wampersand -Wconversion -Wsurprising -Wintrinsics-std -Wno-tabs -Wintrinsic-shadow -Wline-truncation -Wreal-q-constant -Wuninitialized -fbacktrace -ffpe-trap=zero,overflow -finit-real=nan
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|
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# OpenMP flags
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#################
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#
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[OPENMP]
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FC : -fopenmp
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IRPF90_FLAGS : --openmp
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|
@ -22,41 +22,51 @@ END_PROVIDER
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! <ij|kl> = (ik|jl) = sum_a (ik|a).(a|jl)
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!
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! Last dimension of cholesky_ao is cholesky_ao_num
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!
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! https://mogp-emulator.readthedocs.io/en/latest/methods/proc/ProcPivotedCholesky.html
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! https://doi.org/10.1016/j.apnum.2011.10.001 : Page 4, Algorithm 1
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END_DOC
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integer :: rank, ndim
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double precision :: tau
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integer*8 :: ndim8
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integer :: rank
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double precision :: tau, tau2
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double precision, pointer :: L(:,:), L_old(:,:)
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double precision :: s
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double precision, parameter :: dscale = 1.d0
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double precision :: dscale, dscale_tmp
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double precision, allocatable :: D(:), Delta(:,:), Ltmp_p(:,:), Ltmp_q(:,:)
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integer, allocatable :: Lset(:), Dset(:), addr(:,:)
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integer, allocatable :: addr1(:), addr2(:)
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integer*8, allocatable :: Lset(:), Dset(:), addr3(:)
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logical, allocatable :: computed(:)
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integer :: i,j,k,m,p,q, qj, dj, p2, q2
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integer :: N, np, nq
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integer :: i,j,k,m,p,q, dj, p2, q2
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integer*8 :: i8, j8, p8, qj8
|
||||
integer :: N, np, nq, npmax
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||||
double precision :: Dmax, Dmin, Qmax, f
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double precision, external :: get_ao_two_e_integral
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logical, external :: ao_two_e_integral_zero
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double precision, external :: ao_two_e_integral
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integer :: block_size, iblock, ierr
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integer :: block_size, iblock
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double precision :: mem
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double precision, external :: memory_of_double, memory_of_int
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double precision, external :: memory_of_double8, memory_of_int8
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integer, external :: getUnitAndOpen
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integer :: iunit
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integer :: iunit, ierr
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ndim8 = ao_num*ao_num*1_8
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double precision :: wall0,wall1
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call wall_time(wall0)
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ndim = ao_num*ao_num
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deallocate(cholesky_ao)
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! TODO : Save L() to disk
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|
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if (read_ao_cholesky) then
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print *, 'Reading Cholesky vectors from disk...'
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iunit = getUnitAndOpen(trim(ezfio_work_dir)//'cholesky_ao', 'R')
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@ -81,51 +91,57 @@ END_PROVIDER
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endif
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tau = ao_cholesky_threshold
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tau2 = tau*tau
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mem = 6.d0 * memory_of_double(ndim) + 6.d0 * memory_of_int(ndim)
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mem = 6.d0 * memory_of_double8(ndim8) + 6.d0 * memory_of_int8(ndim8)
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call check_mem(mem, irp_here)
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call print_memory_usage()
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allocate(L(ndim,1))
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allocate(L(ndim8,1))
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!print *, 'allocate : (L(ndim8,1))', memory_of_double8(ndim8)
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print *, ''
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print *, 'Cholesky decomposition of AO integrals'
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print *, '======================================'
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print *, ''
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print *, '============ ============='
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print *, ' Rank Threshold'
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print *, ' Rank Threshold'
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print *, '============ ============='
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rank = 0
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allocate( D(ndim), Lset(ndim), Dset(ndim) )
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allocate( addr(3,ndim) )
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allocate( D(ndim8), Lset(ndim8), Dset(ndim8) )
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allocate( addr1(ndim8), addr2(ndim8), addr3(ndim8) )
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!print *, 'allocate : (D(ndim8))', memory_of_int8(ndim8)
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!print *, 'allocate : (Lset(ndim8))', memory_of_int8(ndim8)
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!print *, 'allocate : (Dset(ndim8))', memory_of_int8(ndim8)
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!print *, 'allocate : (4,addr(ndim8))', memory_of_int8(4_8*ndim8)
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! 1.
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k=0
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do j=1,ao_num
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do i=1,ao_num
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k = k+1
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addr(1,k) = i
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addr(2,k) = j
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addr(3,k) = (i-1)*ao_num + j
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addr1(k) = i
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addr2(k) = j
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addr3(k) = (i-1)*ao_num + j
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enddo
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enddo
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||||
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if (do_direct_integrals) then
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!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(i) SCHEDULE(guided)
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do i=1,ndim
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D(i) = ao_two_e_integral(addr(1,i), addr(2,i), &
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addr(1,i), addr(2,i))
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!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(i8) SCHEDULE(dynamic,16)
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do i8=1,ndim8
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||||
D(i8) = ao_two_e_integral(addr1(i8), addr2(i8), &
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||||
addr1(i8), addr2(i8))
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||||
enddo
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!$OMP END PARALLEL DO
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else
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||||
!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(i) SCHEDULE(guided)
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||||
do i=1,ndim
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D(i) = get_ao_two_e_integral(addr(1,i), addr(1,i), &
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addr(2,i), addr(2,i), &
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!$OMP PARALLEL DO DEFAULT(SHARED) PRIVATE(i8) SCHEDULE(dynamic,16)
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do i8=1,ndim8
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D(i8) = get_ao_two_e_integral(addr1(i8), addr1(i8), &
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addr2(i8), addr2(i8), &
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ao_integrals_map)
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enddo
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!$OMP END PARALLEL DO
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@ -134,12 +150,26 @@ END_PROVIDER
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Dmax = maxval(D)
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! 2.
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np=0
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do p=1,ndim
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if ( dscale*dscale*Dmax*D(p) > tau*tau ) then
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np = np+1
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Lset(np) = p
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endif
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npmax = huge(1_4)*1_8
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np = npmax
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dscale = 1.d0
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dscale_tmp = Dmax
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do while (np == npmax)
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np=0
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do p8=1,ndim8
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if ( dscale_tmp*D(p8) > tau2 ) then
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np = np+1
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Lset(np) = p8
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if (np == npmax) then
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! Overflow detected
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dscale = dscale*0.1d0
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dscale_tmp = dscale*dscale*Dmax
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!print *, 'Overflow detected '
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!print *, 'dscale = ', dscale
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exit
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endif
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endif
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enddo
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enddo
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! 3.
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@ -149,13 +179,14 @@ END_PROVIDER
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i = 0
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! 5.
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do while ( (Dmax > tau).and.(rank < ndim) )
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do while ( (Dmax > tau).and.(rank < min(ndim8,huge(1_4))) )
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! a.
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i = i+1
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s = 0.01d0
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! Inrease s until the arrays fit in memory
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s = 0.01d0
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block_size = max(N,24)
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do while (.True.)
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! b.
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@ -170,11 +201,12 @@ END_PROVIDER
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endif
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enddo
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call total_memory(mem)
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mem = mem &
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+ np*memory_of_double(nq) &! Delta(np,nq)
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+ (rank+nq)* memory_of_double(ndim) &! L(ndim,rank+nq)
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+ (np+nq)*memory_of_double(block_size) ! Ltmp_p(np,block_size) + Ltmp_q(nq,block_size)
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mem = mem &
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+ np*memory_of_double(nq) &! Delta(np,nq)
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+ (rank+nq)* memory_of_double8(ndim8) &! L(ndim8,rank+nq)
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+ (np+nq)*memory_of_double(block_size) ! Ltmp_p(np,block_size) + Ltmp_q(nq,block_size)
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||||
if (mem > qp_max_mem) then
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s = s*2.d0
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@ -184,27 +216,31 @@ END_PROVIDER
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||||
|
||||
if ((s > 1.d0).or.(nq == 0)) then
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call print_memory_usage()
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||||
print *, 'Not enough memory. Reduce cholesky threshold'
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||||
print *, 'Required peak memory: ', mem, 'Gb'
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||||
call total_memory(mem)
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||||
print *, 'Already used memory: ', mem, 'Gb'
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||||
print *, 'Not enough memory. Reduce cholesky threshold'
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||||
stop -1
|
||||
endif
|
||||
|
||||
enddo
|
||||
|
||||
! d., e.
|
||||
block_size = max(N,24)
|
||||
|
||||
L_old => L
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||||
allocate(L(ndim,rank+nq), stat=ierr)
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||||
allocate(L(ndim8,rank+nq), stat=ierr)
|
||||
!print *, 'allocate : L(ndim8,rank+nq)', memory_of_double8(ndim8*(rank+nq))
|
||||
|
||||
if (ierr /= 0) then
|
||||
call print_memory_usage()
|
||||
print *, irp_here, ': allocation failed : (L(ndim,rank+nq))'
|
||||
print *, irp_here, ': allocation failed : (L(ndim8,rank+nq))'
|
||||
stop -1
|
||||
endif
|
||||
|
||||
!$OMP PARALLEL DO PRIVATE(k,j)
|
||||
!$OMP PARALLEL DO PRIVATE(k,j8)
|
||||
do k=1,rank
|
||||
do j=1,ndim
|
||||
L(j,k) = L_old(j,k)
|
||||
do j8=1,ndim8
|
||||
L(j8,k) = L_old(j8,k)
|
||||
enddo
|
||||
enddo
|
||||
!$OMP END PARALLEL DO
|
||||
@ -212,6 +248,8 @@ END_PROVIDER
|
||||
deallocate(L_old)
|
||||
|
||||
allocate(Delta(np,nq), stat=ierr)
|
||||
!print *, 'allocate : Delta(np,nq)', memory_of_double8(np*nq*1_8)
|
||||
|
||||
if (ierr /= 0) then
|
||||
call print_memory_usage()
|
||||
print *, irp_here, ': allocation failed : (Delta(np,nq))'
|
||||
@ -219,6 +257,8 @@ END_PROVIDER
|
||||
endif
|
||||
|
||||
allocate(Ltmp_p(np,block_size), stat=ierr)
|
||||
!print *, 'allocate : Ltmp_p(np,block_size)', memory_of_double8(np*block_size*1_8), np, block_size
|
||||
|
||||
if (ierr /= 0) then
|
||||
call print_memory_usage()
|
||||
print *, irp_here, ': allocation failed : (Ltmp_p(np,block_size))'
|
||||
@ -226,6 +266,8 @@ END_PROVIDER
|
||||
endif
|
||||
|
||||
allocate(Ltmp_q(nq,block_size), stat=ierr)
|
||||
!print *, 'allocate : Ltmp_q(nq,block_size)', memory_of_double8(nq*block_size*1_8), nq, block_size
|
||||
|
||||
if (ierr /= 0) then
|
||||
call print_memory_usage()
|
||||
print *, irp_here, ': allocation failed : (Ltmp_q(nq,block_size))'
|
||||
@ -234,32 +276,47 @@ END_PROVIDER
|
||||
|
||||
|
||||
allocate(computed(nq))
|
||||
!print *, 'allocate : computed(nq)', memory_of_int(nq)
|
||||
|
||||
!$OMP PARALLEL DEFAULT(SHARED) PRIVATE(m,k,p,q,j)
|
||||
!print *, 'N, rank, block_size', N, rank, block_size
|
||||
!print *, 'p1'
|
||||
!$OMP PARALLEL DEFAULT(SHARED) PRIVATE(k,p,q,j)
|
||||
|
||||
!print *, 'computed'
|
||||
!$OMP DO
|
||||
do q=1,nq
|
||||
computed(q) = .False.
|
||||
enddo
|
||||
!$OMP ENDDO NOWAIT
|
||||
|
||||
!print *, 'Delta'
|
||||
!$OMP DO
|
||||
do q=1,nq
|
||||
do j=1,np
|
||||
Delta(j,q) = 0.d0
|
||||
enddo
|
||||
computed(q) = .False.
|
||||
enddo
|
||||
!$OMP ENDDO NOWAIT
|
||||
|
||||
!$OMP DO
|
||||
!print *, 'Ltmp_p'
|
||||
do k=1,N
|
||||
!$OMP DO
|
||||
do p=1,np
|
||||
Ltmp_p(p,k) = L(Lset(p),k)
|
||||
enddo
|
||||
!$OMP END DO NOWAIT
|
||||
|
||||
!$OMP DO
|
||||
do q=1,nq
|
||||
Ltmp_q(q,k) = L(Dset(q),k)
|
||||
enddo
|
||||
!$OMP END DO NOWAIT
|
||||
enddo
|
||||
!$OMP END DO NOWAIT
|
||||
|
||||
!$OMP BARRIER
|
||||
!$OMP END PARALLEL
|
||||
|
||||
!print *, 'p2', np, nq, N
|
||||
if (N>0) then
|
||||
call dgemm('N','T', np, nq, N, -1.d0, &
|
||||
Ltmp_p, np, Ltmp_q, nq, 1.d0, Delta, np)
|
||||
@ -276,54 +333,67 @@ END_PROVIDER
|
||||
iblock = 0
|
||||
do j=1,nq
|
||||
|
||||
if ( (Qmax <= Dmin).or.(N+j > ndim) ) exit
|
||||
if ( (Qmax <= Dmin).or.(N+j*1_8 > ndim8) ) exit
|
||||
! i.
|
||||
rank = N+j
|
||||
|
||||
if (iblock == block_size) then
|
||||
!print *, 'dgemm'
|
||||
call dgemm('N','T',np,nq,block_size,-1.d0, &
|
||||
Ltmp_p, np, Ltmp_q, nq, 1.d0, Delta, np)
|
||||
|
||||
iblock = 0
|
||||
endif
|
||||
|
||||
! ii.
|
||||
do dj=1,nq
|
||||
qj = Dset(dj)
|
||||
if (D(qj) == Qmax) then
|
||||
qj8 = Dset(dj)
|
||||
if (D(qj8) == Qmax) then
|
||||
exit
|
||||
endif
|
||||
enddo
|
||||
|
||||
L(1:ndim, rank) = 0.d0
|
||||
do i8=1,ndim8
|
||||
L(i8, rank) = 0.d0
|
||||
enddo
|
||||
|
||||
if (.not.computed(dj)) then
|
||||
m = dj
|
||||
!$OMP PARALLEL DO PRIVATE(k) SCHEDULE(guided)
|
||||
do k=np,1,-1
|
||||
if (.not.ao_two_e_integral_zero( addr(1,Lset(k)), addr(1,Dset(m)),&
|
||||
addr(2,Lset(k)), addr(2,Dset(m)) ) ) then
|
||||
if (do_direct_integrals) then
|
||||
Delta(k,m) = Delta(k,m) + &
|
||||
ao_two_e_integral(addr(1,Lset(k)), addr(2,Lset(k)),&
|
||||
addr(1,Dset(m)), addr(2,Dset(m)))
|
||||
else
|
||||
Delta(k,m) = Delta(k,m) + &
|
||||
get_ao_two_e_integral( addr(1,Lset(k)), addr(1,Dset(m)),&
|
||||
addr(2,Lset(k)), addr(2,Dset(m)), ao_integrals_map)
|
||||
endif
|
||||
endif
|
||||
enddo
|
||||
!$OMP END PARALLEL DO
|
||||
if (do_direct_integrals) then
|
||||
!$OMP PARALLEL DO PRIVATE(k) SCHEDULE(dynamic,16)
|
||||
do k=np,1,-1
|
||||
if (.not.ao_two_e_integral_zero( addr1(Lset(k)), addr1(Dset(m)),&
|
||||
addr2(Lset(k)), addr2(Dset(m)) ) ) then
|
||||
Delta(k,m) = Delta(k,m) + &
|
||||
ao_two_e_integral(addr1(Lset(k)), addr2(Lset(k)),&
|
||||
addr1(Dset(m)), addr2(Dset(m)))
|
||||
endif
|
||||
enddo
|
||||
!$OMP END PARALLEL DO
|
||||
else
|
||||
!$OMP PARALLEL DO PRIVATE(k) SCHEDULE(dynamic,16)
|
||||
do k=np,1,-1
|
||||
if (.not.ao_two_e_integral_zero( addr1(Lset(k)), addr1(Dset(m)),&
|
||||
addr2(Lset(k)), addr2(Dset(m)) ) ) then
|
||||
Delta(k,m) = Delta(k,m) + &
|
||||
get_ao_two_e_integral( addr1(Lset(k)), addr1(Dset(m)),&
|
||||
addr2(Lset(k)), addr2(Dset(m)), ao_integrals_map)
|
||||
endif
|
||||
enddo
|
||||
!$OMP END PARALLEL DO
|
||||
endif
|
||||
computed(dj) = .True.
|
||||
endif
|
||||
|
||||
iblock = iblock+1
|
||||
!print *, iblock
|
||||
do p=1,np
|
||||
Ltmp_p(p,iblock) = Delta(p,dj)
|
||||
enddo
|
||||
|
||||
! iv.
|
||||
if (iblock > 1) then
|
||||
!print *, 'dgemv', iblock
|
||||
call dgemv('N', np, iblock-1, -1.d0, Ltmp_p, np, Ltmp_q(dj,1), nq, 1.d0,&
|
||||
Ltmp_p(1,iblock), 1)
|
||||
endif
|
||||
@ -331,7 +401,8 @@ END_PROVIDER
|
||||
! iii.
|
||||
f = 1.d0/dsqrt(Qmax)
|
||||
|
||||
!$OMP PARALLEL PRIVATE(m,p,q,k) DEFAULT(shared)
|
||||
!print *, 'p4'
|
||||
!$OMP PARALLEL PRIVATE(p,q) DEFAULT(shared)
|
||||
!$OMP DO
|
||||
do p=1,np
|
||||
Ltmp_p(p,iblock) = Ltmp_p(p,iblock) * f
|
||||
@ -345,7 +416,6 @@ END_PROVIDER
|
||||
Ltmp_q(q,iblock) = L(Dset(q), rank)
|
||||
enddo
|
||||
!$OMP END DO
|
||||
|
||||
!$OMP END PARALLEL
|
||||
|
||||
Qmax = D(Dset(1))
|
||||
@ -357,10 +427,10 @@ END_PROVIDER
|
||||
|
||||
print '(I10, 4X, ES12.3)', rank, Qmax
|
||||
|
||||
deallocate(computed)
|
||||
deallocate(Delta)
|
||||
deallocate(Ltmp_p)
|
||||
deallocate(Ltmp_q)
|
||||
deallocate(computed)
|
||||
deallocate(Delta)
|
||||
|
||||
! i.
|
||||
N = rank
|
||||
@ -371,17 +441,33 @@ END_PROVIDER
|
||||
Dmax = max(Dmax, D(Lset(p)))
|
||||
enddo
|
||||
|
||||
np=0
|
||||
do p=1,ndim
|
||||
if ( dscale*dscale*Dmax*D(p) > tau*tau ) then
|
||||
np = np+1
|
||||
Lset(np) = p
|
||||
endif
|
||||
np = npmax
|
||||
dscale = 1.d0
|
||||
dscale_tmp = Dmax
|
||||
do while (np == npmax)
|
||||
np=0
|
||||
do p8=1,ndim8
|
||||
if ( dscale_tmp*D(p8) > tau2 ) then
|
||||
np = np+1
|
||||
Lset(np) = p8
|
||||
if (np == npmax) then
|
||||
! Overflow detected
|
||||
dscale = dscale*0.5d0
|
||||
dscale_tmp = dscale*dscale*Dmax
|
||||
!print *, 'Overflow detected '
|
||||
!print *, 'dscale = ', dscale
|
||||
exit
|
||||
endif
|
||||
endif
|
||||
enddo
|
||||
enddo
|
||||
|
||||
|
||||
enddo
|
||||
|
||||
allocate(cholesky_ao(ao_num,ao_num,rank), stat=ierr)
|
||||
!print *, 'allocate : cholesky_ao(ao_num,ao_num,rank)', memory_of_double8(ao_num*ao_num*rank*1_8)
|
||||
|
||||
if (ierr /= 0) then
|
||||
call print_memory_usage()
|
||||
print *, irp_here, ': Allocation failed'
|
||||
@ -389,7 +475,9 @@ END_PROVIDER
|
||||
endif
|
||||
!$OMP PARALLEL DO PRIVATE(k)
|
||||
do k=1,rank
|
||||
call dcopy(ndim, L(1,k), 1, cholesky_ao(1,1,k), 1)
|
||||
do j=1,ao_num
|
||||
cholesky_ao(1:ao_num,j,k) = L((j-1)*ao_num+1:j*ao_num,k)
|
||||
enddo
|
||||
enddo
|
||||
!$OMP END PARALLEL DO
|
||||
deallocate(L)
|
||||
|
@ -79,6 +79,26 @@ IRP_ENDIF
|
||||
call unlock_io()
|
||||
end function
|
||||
|
||||
double precision function memory_of_double8(n)
|
||||
implicit none
|
||||
BEGIN_DOC
|
||||
! Computes the memory required for n double precision elements in gigabytes.
|
||||
END_DOC
|
||||
integer*8, intent(in) :: n
|
||||
double precision, parameter :: f = 8.d0 / (1024.d0*1024.d0*1024.d0)
|
||||
memory_of_double8 = dble(n) * f
|
||||
end function
|
||||
|
||||
double precision function memory_of_int8(n)
|
||||
implicit none
|
||||
BEGIN_DOC
|
||||
! Computes the memory required for n double precision elements in gigabytes.
|
||||
END_DOC
|
||||
integer*8, intent(in) :: n
|
||||
double precision, parameter :: f = 4.d0 / (1024.d0*1024.d0*1024.d0)
|
||||
memory_of_int8 = dble(n) * f
|
||||
end function
|
||||
|
||||
double precision function memory_of_double(n)
|
||||
implicit none
|
||||
BEGIN_DOC
|
||||
|
Loading…
Reference in New Issue
Block a user