mirror of
https://gitlab.com/scemama/qmcchem.git
synced 2024-11-07 06:33:38 +01:00
commit
b8f36ded55
@ -33,7 +33,6 @@ nuclei
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nucl_label character*(32) (nuclei_nucl_num)
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nucl_label character*(32) (nuclei_nucl_num)
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nucl_charge real (nuclei_nucl_num)
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nucl_charge real (nuclei_nucl_num)
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nucl_coord real (nuclei_nucl_num,3)
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nucl_coord real (nuclei_nucl_num,3)
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nucl_fitcusp_radius real (nuclei_nucl_num)
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spindeterminants
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spindeterminants
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n_det_alpha integer
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n_det_alpha integer
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@ -55,7 +54,7 @@ simulation
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equilibration logical
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equilibration logical
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http_server character*(128)
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http_server character*(128)
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do_jast logical
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do_jast logical
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do_nucl_fitcusp logical
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nucl_fitcusp_factor real
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method character*(32)
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method character*(32)
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block_time integer
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block_time integer
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sampling character*(32)
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sampling character*(32)
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@ -4,7 +4,7 @@ set -u
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set -e
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set -e
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cd .. ; QMCCHEM_PATH="$PWD" ; cd -
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cd .. ; QMCCHEM_PATH="$PWD" ; cd -
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PACKAGES="core cryptokit ocamlfind sexplib"
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PACKAGES="core cryptokit ocamlfind sexplib pa_sexp_conv"
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declare -i i
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declare -i i
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i=$(gcc -dumpversion | cut -d '.' -f 2)
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i=$(gcc -dumpversion | cut -d '.' -f 2)
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@ -1,15 +1,21 @@
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open Core.Std;;
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open Core.Std;;
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let simulation_do_nucl_fitcusp = lazy(
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let simulation_nucl_fitcusp_factor = lazy(
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if (not (Ezfio.has_pseudo_do_pseudo ())) then
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let default =
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not (Ezfio.get_pseudo_do_pseudo ())
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1.
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in
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if (Ezfio.has_pseudo_do_pseudo ()) then
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if (Ezfio.get_pseudo_do_pseudo ()) then
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0.
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else
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else
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true
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default
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else
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default
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)
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)
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let electrons_elec_walk_num = lazy ( 30 )
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let electrons_elec_walk_num = lazy ( 100 )
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let electrons_elec_walk_num_tot = lazy ( 10000 )
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let electrons_elec_walk_num_tot = lazy ( 1000 )
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let jastrow_jast_type = lazy ( "None" )
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let jastrow_jast_type = lazy ( "None" )
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let simulation_block_time = lazy ( 30 )
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let simulation_block_time = lazy ( 30 )
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let simulation_ci_threshold = lazy ( 1.e-8 )
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let simulation_ci_threshold = lazy ( 1.e-8 )
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@ -26,9 +32,9 @@ let reset_defaults () =
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"/jastrow/jast_type" ;
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"/jastrow/jast_type" ;
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"/simulation/block_time" ;
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"/simulation/block_time" ;
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"/simulation/ci_threshold" ;
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"/simulation/ci_threshold" ;
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"/simulation/do_nucl_fitcusp" ;
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"/simulation/method" ;
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"/simulation/method" ;
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"/simulation/sampling" ;
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"/simulation/sampling" ;
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"/simulation/stop_time" ;
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"/simulation/stop_time" ;
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"/simulation/time_step" ]
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"/simulation/time_step" ;
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"/simulation/nucl_fitcusp_factor" ]
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111
ocaml/Input.ml
111
ocaml/Input.ml
@ -66,81 +66,69 @@ end = struct
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end
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end
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module Fitcusp : sig
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type t = bool
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module Fitcusp_factor : sig
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type t = float
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val doc : string
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val doc : string
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val read : unit -> t
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val read : unit -> t
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val write : t -> unit
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val write : t -> unit
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val to_bool : t -> bool
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val to_float : t -> float
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val of_bool : bool -> t
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val of_float : float -> t
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val to_int : t -> int
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val of_int : int -> t
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val to_string : t -> string
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val to_string : t -> string
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val of_string : string -> t
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val of_string : string -> t
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end = struct
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end = struct
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type t = bool
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type t = float
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let doc = "Correct wave function to verify electron-nucleus cusp condition"
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let doc = "Correct wave function to verify electron-nucleus cusp condition.
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Fit is done for r < r_c(f) where r_c(f) = (1s orbital radius) x f. Value of f"
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let of_bool x = x
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let of_float x =
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if (x < 0.) then
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failwith "Fitcusp_factor should be >= 0.";
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if (x > 10.) then
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failwith "Fitcusp_factor is too large.";
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x
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let to_bool x = x
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let to_float x = x
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let read () =
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let read () =
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let _ =
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ignore @@
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Lazy.force Qputils.ezfio_filename
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Lazy.force Qputils.ezfio_filename ;
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if (not (Ezfio.has_simulation_nucl_fitcusp_factor ())) then
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begin
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let factor =
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Lazy.force Default.simulation_nucl_fitcusp_factor ;
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in
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in
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if (not (Ezfio.has_simulation_do_nucl_fitcusp ())) then
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Ezfio.set_simulation_nucl_fitcusp_factor factor
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Lazy.force Default.simulation_do_nucl_fitcusp
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end ;
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|> Ezfio.set_simulation_do_nucl_fitcusp ;
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Ezfio.get_simulation_nucl_fitcusp_factor ()
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Ezfio.get_simulation_do_nucl_fitcusp ()
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|> of_float
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|> of_bool
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let write t =
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let write t =
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let _ =
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let _ =
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Lazy.force Qputils.ezfio_filename
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Lazy.force Qputils.ezfio_filename
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in
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in
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let () =
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to_float t
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match (Pseudo.read () |> Pseudo.to_bool, to_bool t) with
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|> Ezfio.set_simulation_nucl_fitcusp_factor
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| (true, true) -> failwith "Pseudopotentials and Fitcusp are incompatible"
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| _ -> ()
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in
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to_bool t
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|> Ezfio.set_simulation_do_nucl_fitcusp
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let to_string t =
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let to_string t =
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to_bool t
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to_float t
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|> Bool.to_string
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|> Float.to_string
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let of_string t =
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let of_string t =
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try
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try
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String.lowercase t
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Float.of_string t
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|> Bool.of_string
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|> of_float
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|> of_bool
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with
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with
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| Invalid_argument msg -> failwith msg
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| Invalid_argument msg -> failwith msg
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let to_int t =
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let t =
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to_bool t
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in
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if t then 1
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else 0
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let of_int = function
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| 0 -> false
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| 1 -> true
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| _ -> failwith "Expected 0 or 1"
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end
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end
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module Block_time : sig
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module Block_time : sig
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@ -399,7 +387,7 @@ end
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module Method : sig
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module Method : sig
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type t = VMC | DMC | SRMC
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type t = VMC | DMC | SRMC | FKMC
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val doc : string
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val doc : string
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val read : unit -> t
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val read : unit -> t
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val write : t -> unit
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val write : t -> unit
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@ -408,21 +396,23 @@ module Method : sig
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end = struct
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end = struct
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type t = VMC | DMC | SRMC
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type t = VMC | DMC | SRMC | FKMC
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let doc = "QMC Method : [ VMC | DMC | SRMC ]"
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let doc = "QMC Method : [ VMC | DMC | SRMC | FKMC ]"
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let of_string = function
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let of_string = function
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| "VMC" | "vmc" -> VMC
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| "VMC" | "vmc" -> VMC
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| "DMC" | "dmc" -> DMC
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| "DMC" | "dmc" -> DMC
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| "SRMC" | "srmc" -> SRMC
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| "SRMC" | "srmc" -> SRMC
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| x -> failwith ("Method should be [ VMC | DMC | SRMC ], not "^x^".")
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| "FKMC" | "fkmc" -> FKMC
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| x -> failwith ("Method should be [ VMC | DMC | SRMC | FKMC ], not "^x^".")
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let to_string = function
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let to_string = function
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| VMC -> "VMC"
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| VMC -> "VMC"
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| DMC -> "DMC"
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| DMC -> "DMC"
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| SRMC -> "SRMC"
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| SRMC -> "SRMC"
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| FKMC -> "FKMC"
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let read () =
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let read () =
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@ -855,8 +845,6 @@ let validate () =
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Time_step.read ()
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Time_step.read ()
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and jast_type =
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and jast_type =
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Jastrow_type.read ()
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Jastrow_type.read ()
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and do_fitcusp =
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Fitcusp.read ()
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and do_pseudo =
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and do_pseudo =
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Pseudo.read ()
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Pseudo.read ()
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in
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in
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@ -865,10 +853,12 @@ let validate () =
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let () =
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let () =
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match (sampling, meth, Pseudo.to_bool do_pseudo) with
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match (sampling, meth, Pseudo.to_bool do_pseudo) with
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| (Sampling.Brownian, Method.DMC, true)
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| (Sampling.Brownian, Method.DMC, true)
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| (Sampling.Brownian, Method.FKMC, true)
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| (Sampling.Brownian, Method.SRMC, true) ->
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| (Sampling.Brownian, Method.SRMC, true) ->
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if ( (Time_step.to_float ts) >= 0.5 ) then
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if ( (Time_step.to_float ts) >= 0.5 ) then
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warn ( "Time step seems large for "^(Method.to_string meth) )
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warn ( "Time step seems large for "^(Method.to_string meth) )
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| (Sampling.Brownian, Method.SRMC, false)
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| (Sampling.Brownian, Method.SRMC, false)
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| (Sampling.Brownian, Method.FKMC, false)
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| (Sampling.Brownian, Method.DMC, false) ->
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| (Sampling.Brownian, Method.DMC, false) ->
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if ( (Time_step.to_float ts) >= 0.01 ) then
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if ( (Time_step.to_float ts) >= 0.01 ) then
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warn ( "Time step seems large for "^(Method.to_string meth) )
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warn ( "Time step seems large for "^(Method.to_string meth) )
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@ -879,8 +869,9 @@ let validate () =
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if ( (Time_step.to_float ts) <= 0.01 ) then
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if ( (Time_step.to_float ts) <= 0.01 ) then
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warn "Time step seems small for Langevin sampling."
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warn "Time step seems small for Langevin sampling."
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| (Sampling.Langevin, Method.SRMC, _)
|
| (Sampling.Langevin, Method.SRMC, _)
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|
| (Sampling.Langevin, Method.FKMC, _)
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| (Sampling.Langevin, Method.DMC, _) ->
|
| (Sampling.Langevin, Method.DMC, _) ->
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failwith "Lanvegin sampling is incompatible with DMC/SRMC"
|
failwith "Lanvegin sampling is incompatible with DMC"
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in
|
in
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|
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|
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@ -888,6 +879,7 @@ let validate () =
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let () =
|
let () =
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match (meth, Ref_energy.(read () |> to_float) ) with
|
match (meth, Ref_energy.(read () |> to_float) ) with
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||||||
| (Method.SRMC,0.)
|
| (Method.SRMC,0.)
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|
| (Method.FKMC,0.)
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| (Method.DMC,0.) -> failwith ("E_ref should not be zero in "^(Method.to_string meth) )
|
| (Method.DMC,0.) -> failwith ("E_ref should not be zero in "^(Method.to_string meth) )
|
||||||
| _ -> ()
|
| _ -> ()
|
||||||
in
|
in
|
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@ -902,6 +894,7 @@ let validate () =
|
|||||||
let () =
|
let () =
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match (meth, Property.(calc E_loc)) with
|
match (meth, Property.(calc E_loc)) with
|
||||||
| (Method.SRMC, false)
|
| (Method.SRMC, false)
|
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|
| (Method.FKMC, false)
|
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| (Method.DMC, false) -> failwith ( "E_loc should be sampled in "^(Method.to_string meth) )
|
| (Method.DMC, false) -> failwith ( "E_loc should be sampled in "^(Method.to_string meth) )
|
||||||
| (Method.VMC, false) -> warn "Sampling of E_loc is not activated in input"
|
| (Method.VMC, false) -> warn "Sampling of E_loc is not activated in input"
|
||||||
| _ -> ()
|
| _ -> ()
|
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@ -915,13 +908,23 @@ let validate () =
|
|||||||
| _ -> ()
|
| _ -> ()
|
||||||
in
|
in
|
||||||
|
|
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(* Fitcusp is not recommended with pseudo *)
|
(* Fitcusp is incompatible with pseudo *)
|
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let () =
|
let () =
|
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match (Pseudo.to_bool do_pseudo, Fitcusp.to_bool do_fitcusp) with
|
let f =
|
||||||
| (true, true) -> warn "Fitcusp is incompatible with Pseudopotentials"
|
Fitcusp_factor.read ()
|
||||||
|
|> Fitcusp_factor.to_float
|
||||||
|
in
|
||||||
|
match (Pseudo.to_bool do_pseudo, f > 0.) with
|
||||||
|
| (true, true) ->
|
||||||
|
begin
|
||||||
|
warn "Electron-nucleus cusp fitting is incompatible with Pseudopotentials.";
|
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|
Fitcusp_factor.of_float 0.
|
||||||
|
|> Fitcusp_factor.write
|
||||||
|
end
|
||||||
| _ -> ()
|
| _ -> ()
|
||||||
in
|
in
|
||||||
|
|
||||||
|
|
||||||
(* Other Checks *)
|
(* Other Checks *)
|
||||||
let () =
|
let () =
|
||||||
let _ =
|
let _ =
|
||||||
|
@ -37,10 +37,9 @@ let files_to_track = [
|
|||||||
"mo_basis/mo_tot_num" ;
|
"mo_basis/mo_tot_num" ;
|
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"nuclei/nucl_charge.gz" ;
|
"nuclei/nucl_charge.gz" ;
|
||||||
"nuclei/nucl_coord.gz" ;
|
"nuclei/nucl_coord.gz" ;
|
||||||
"nuclei/nucl_fitcusp_radius.gz" ;
|
|
||||||
"nuclei/nucl_num" ;
|
"nuclei/nucl_num" ;
|
||||||
"simulation/ci_threshold" ;
|
"simulation/ci_threshold" ;
|
||||||
"simulation/do_nucl_fitcusp" ;
|
"simulation/nucl_fitcusp_factor" ;
|
||||||
"simulation/jast_a_up_dn" ;
|
"simulation/jast_a_up_dn" ;
|
||||||
"simulation/jast_a_up_up" ;
|
"simulation/jast_a_up_up" ;
|
||||||
"simulation/jast_b_up_dn" ;
|
"simulation/jast_b_up_dn" ;
|
||||||
|
@ -71,8 +71,6 @@ let run ?(daemon=true) ezfio_filename =
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
(*
|
|
||||||
(** Checks if the port is already open (not working properly yet) *)
|
|
||||||
let check_port n =
|
let check_port n =
|
||||||
let adress_prefix =
|
let adress_prefix =
|
||||||
"tcp://*:"
|
"tcp://*:"
|
||||||
@ -87,7 +85,9 @@ let run ?(daemon=true) ezfio_filename =
|
|||||||
in
|
in
|
||||||
let result =
|
let result =
|
||||||
try
|
try
|
||||||
(ZMQ.Socket.bind socket address; accu );
|
ZMQ.Socket.bind socket address;
|
||||||
|
ZMQ.Socket.unbind socket address;
|
||||||
|
accu;
|
||||||
with
|
with
|
||||||
| _ -> false;
|
| _ -> false;
|
||||||
in
|
in
|
||||||
@ -100,22 +100,18 @@ let run ?(daemon=true) ezfio_filename =
|
|||||||
else
|
else
|
||||||
`Unavailable
|
`Unavailable
|
||||||
in
|
in
|
||||||
*)
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
(** Random port number between 49152 and 65535 *)
|
(** Random port number between 49152 and 65535 *)
|
||||||
let port =
|
let port =
|
||||||
let newport =
|
let newport =
|
||||||
(* ref (49152 + (Random.int 16383)) *)
|
|
||||||
ref ( 1024 + (Random.int (49151-1024)))
|
ref ( 1024 + (Random.int (49151-1024)))
|
||||||
in
|
in
|
||||||
(*
|
|
||||||
while ((check_port !newport) = `Unavailable)
|
while ((check_port !newport) = `Unavailable)
|
||||||
do
|
do
|
||||||
newport := 49152 + (Random.int 16383)
|
newport := 1024 + (Random.int (49151-1024))
|
||||||
done;
|
done;
|
||||||
*)
|
|
||||||
!newport
|
!newport
|
||||||
in
|
in
|
||||||
|
|
||||||
@ -837,12 +833,13 @@ let run ?(daemon=true) ezfio_filename =
|
|||||||
|
|
||||||
(* Handle signals *)
|
(* Handle signals *)
|
||||||
let handler s =
|
let handler s =
|
||||||
|
Printf.printf "Dataserver received the %s signal... killing\n%!" (Signal.to_string s);
|
||||||
Watchdog.kill ();
|
Watchdog.kill ();
|
||||||
in
|
in
|
||||||
List.iter [
|
List.iter [
|
||||||
|
Signal.int ;
|
||||||
Signal.term ;
|
Signal.term ;
|
||||||
Signal.quit ;
|
Signal.quit ;
|
||||||
Signal.int
|
|
||||||
]
|
]
|
||||||
~f:(fun x -> Signal.Expert.handle x handler)
|
~f:(fun x -> Signal.Expert.handle x handler)
|
||||||
;
|
;
|
||||||
|
@ -20,7 +20,7 @@ type field =
|
|||||||
| Walk_num
|
| Walk_num
|
||||||
| Walk_num_tot
|
| Walk_num_tot
|
||||||
| Stop_time
|
| Stop_time
|
||||||
| Fitcusp
|
| Fitcusp_factor
|
||||||
| Method
|
| Method
|
||||||
| Sampling
|
| Sampling
|
||||||
| Ref_energy
|
| Ref_energy
|
||||||
@ -54,8 +54,8 @@ let get field =
|
|||||||
option_to_string Walk_num_tot.read Walk_num_tot.to_string Walk_num_tot.doc
|
option_to_string Walk_num_tot.read Walk_num_tot.to_string Walk_num_tot.doc
|
||||||
| Stop_time ->
|
| Stop_time ->
|
||||||
option_to_string Stop_time.read Stop_time.to_string Stop_time.doc
|
option_to_string Stop_time.read Stop_time.to_string Stop_time.doc
|
||||||
| Fitcusp ->
|
| Fitcusp_factor ->
|
||||||
option_to_string Fitcusp.read Fitcusp.to_string Fitcusp.doc
|
option_to_string Fitcusp_factor.read Fitcusp_factor.to_string Fitcusp_factor.doc
|
||||||
| Method ->
|
| Method ->
|
||||||
option_to_string Method.read Method.to_string Method.doc
|
option_to_string Method.read Method.to_string Method.doc
|
||||||
| Sampling ->
|
| Sampling ->
|
||||||
@ -136,7 +136,7 @@ let run ~c ?f ?t ?l ?m ?e ?s ?ts ?w ?wt ?n ?j ?p ?input ezfio_filename =
|
|||||||
handle_option Input.Method.(of_string, write) m;
|
handle_option Input.Method.(of_string, write) m;
|
||||||
handle_option Input.Stop_time.(of_int , write) t;
|
handle_option Input.Stop_time.(of_int , write) t;
|
||||||
handle_option Input.Sampling.(of_string, write) s;
|
handle_option Input.Sampling.(of_string, write) s;
|
||||||
handle_option Input.Fitcusp.(of_int , write) f;
|
handle_option Input.Fitcusp_factor.(of_float , write) f;
|
||||||
handle_option Input.Time_step.(of_float , write) ts;
|
handle_option Input.Time_step.(of_float , write) ts;
|
||||||
handle_option Input.Walk_num.(of_int , write) w;
|
handle_option Input.Walk_num.(of_int , write) w;
|
||||||
handle_option Input.Walk_num_tot.(of_int , write) wt;
|
handle_option Input.Walk_num_tot.(of_int , write) wt;
|
||||||
@ -155,7 +155,7 @@ let run ~c ?f ?t ?l ?m ?e ?s ?ts ?w ?wt ?n ?j ?p ?input ezfio_filename =
|
|||||||
Ref_energy ;
|
Ref_energy ;
|
||||||
Walk_num ;
|
Walk_num ;
|
||||||
Walk_num_tot ;
|
Walk_num_tot ;
|
||||||
Fitcusp ;
|
Fitcusp_factor ;
|
||||||
CI_threshold ;
|
CI_threshold ;
|
||||||
Jastrow_type ;
|
Jastrow_type ;
|
||||||
Properties ;
|
Properties ;
|
||||||
@ -214,7 +214,7 @@ let run ~c ?f ?t ?l ?m ?e ?s ?ts ?w ?wt ?n ?j ?p ?input ezfio_filename =
|
|||||||
begin
|
begin
|
||||||
match f with
|
match f with
|
||||||
| Stop_time -> Stop_time.(of_string s |> write)
|
| Stop_time -> Stop_time.(of_string s |> write)
|
||||||
| Fitcusp -> Fitcusp.(of_string s |> write)
|
| Fitcusp_factor -> Fitcusp_factor.(of_string s |> write)
|
||||||
| Block_time -> Block_time.(of_string s |> write)
|
| Block_time -> Block_time.(of_string s |> write)
|
||||||
| Method -> Method.(of_string s |> write)
|
| Method -> Method.(of_string s |> write)
|
||||||
| Ref_energy -> Ref_energy.(of_string s |> write)
|
| Ref_energy -> Ref_energy.(of_string s |> write)
|
||||||
@ -271,8 +271,8 @@ let spec =
|
|||||||
empty
|
empty
|
||||||
+> flag "c" no_arg
|
+> flag "c" no_arg
|
||||||
~doc:(" Clear blocks")
|
~doc:(" Clear blocks")
|
||||||
+> flag "f" (optional int)
|
+> flag "f" (optional float)
|
||||||
~doc:("0|1 "^Input.Fitcusp.doc)
|
~doc:("float "^Input.Fitcusp_factor.doc)
|
||||||
+> flag "t" (optional int)
|
+> flag "t" (optional int)
|
||||||
~doc:("seconds "^Input.Stop_time.doc)
|
~doc:("seconds "^Input.Stop_time.doc)
|
||||||
+> flag "l" (optional int)
|
+> flag "l" (optional int)
|
||||||
|
@ -1,14 +1,20 @@
|
|||||||
open Core.Std;;
|
open Core.Std;;
|
||||||
|
|
||||||
let bind_socket ~socket_type ~socket ~address =
|
let bind_socket ~socket_type ~socket ~address =
|
||||||
|
let rec loop = function
|
||||||
|
| 0 -> failwith @@ Printf.sprintf
|
||||||
|
"Unable to bind the forwarder's %s socket : %s\n"
|
||||||
|
socket_type address
|
||||||
|
| -1 -> ()
|
||||||
|
| i ->
|
||||||
try
|
try
|
||||||
ZMQ.Socket.bind socket address
|
ZMQ.Socket.bind socket address;
|
||||||
|
loop (-1)
|
||||||
with
|
with
|
||||||
| Unix.Unix_error (_, message, f) ->
|
| Unix.Unix_error _ -> (Time.pause @@ Time.Span.of_float 1. ; loop (i-1) )
|
||||||
failwith @@ Printf.sprintf
|
|
||||||
"\n%s\nUnable to bind the forwarder's %s socket :\n %s\n%s"
|
|
||||||
f socket_type address message
|
|
||||||
| other_exception -> raise other_exception
|
| other_exception -> raise other_exception
|
||||||
|
in loop 10
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
let run ezfio_filename dataserver =
|
let run ezfio_filename dataserver =
|
||||||
@ -45,18 +51,41 @@ let run ezfio_filename dataserver =
|
|||||||
*)
|
*)
|
||||||
let () =
|
let () =
|
||||||
try
|
try
|
||||||
Unix.mkdir tmpdir
|
Unix.mkdir tmpdir;
|
||||||
|
Unix.chdir tmpdir
|
||||||
with
|
with
|
||||||
| Unix.Unix_error _ ->
|
| Unix.Unix_error _ ->
|
||||||
(* TODO : wait until the forwarder has started *)
|
|
||||||
begin
|
begin
|
||||||
Unix.chdir tmpdir;
|
Unix.chdir tmpdir;
|
||||||
ignore @@ Unix.exec ~prog ~args ()
|
Time.pause @@ Time.Span.of_float 0.1;
|
||||||
|
match (Sys.file_exists "PID") with
|
||||||
|
| `No
|
||||||
|
| `Unknown -> ()
|
||||||
|
| `Yes ->
|
||||||
|
let pid =
|
||||||
|
In_channel.with_file "PID" ~f:(fun ic ->
|
||||||
|
match (In_channel.input_line ic) with
|
||||||
|
| Some x -> x
|
||||||
|
| None -> "-1" )
|
||||||
|
|> Int.of_string
|
||||||
|
in
|
||||||
|
match pid with
|
||||||
|
| -1 -> ()
|
||||||
|
| pid ->
|
||||||
|
begin
|
||||||
|
match Signal.send (Signal.of_system_int 0) (`Pid (Pid.of_int pid)) with
|
||||||
|
| `No_such_process -> ()
|
||||||
|
| _ -> ignore @@ Unix.exec ~prog ~args ()
|
||||||
|
end
|
||||||
end
|
end
|
||||||
in
|
in
|
||||||
Unix.chdir tmpdir;
|
|
||||||
|
|
||||||
(* Now, only one forwarder will execute the following code *)
|
(* Now, only one forwarder will execute the following code *)
|
||||||
|
Out_channel.with_file "PID" ~f:(fun oc ->
|
||||||
|
Unix.getpid ()
|
||||||
|
|> Pid.to_int
|
||||||
|
|> Printf.sprintf "%d\n"
|
||||||
|
|> Out_channel.output_string oc);
|
||||||
|
|
||||||
(* Fork a qmc *)
|
(* Fork a qmc *)
|
||||||
ignore @@
|
ignore @@
|
||||||
@ -90,20 +119,20 @@ let run ezfio_filename dataserver =
|
|||||||
with
|
with
|
||||||
| _ -> ()
|
| _ -> ()
|
||||||
;
|
;
|
||||||
done
|
done;
|
||||||
|
Watchdog.kill ()
|
||||||
in
|
in
|
||||||
|
|
||||||
|
|
||||||
(* Signal handler to Kill properly all the processes *)
|
(* Signal handler to Kill properly all the processes *)
|
||||||
let handler s =
|
let handler s =
|
||||||
Printf.printf "Forwarder received the %s signal... killing\n" (Signal.to_string s);
|
Printf.printf "Forwarder received the %s signal... killing\n%!" (Signal.to_string s);
|
||||||
terminate ();
|
terminate ();
|
||||||
Watchdog.kill ();
|
|
||||||
in
|
in
|
||||||
List.iter [
|
List.iter [
|
||||||
|
Signal.int ;
|
||||||
Signal.term ;
|
Signal.term ;
|
||||||
Signal.quit ;
|
Signal.quit ;
|
||||||
Signal.int
|
|
||||||
]
|
]
|
||||||
~f:(fun x -> Signal.Expert.handle x handler)
|
~f:(fun x -> Signal.Expert.handle x handler)
|
||||||
;
|
;
|
||||||
@ -465,6 +494,13 @@ let run ezfio_filename dataserver =
|
|||||||
end;
|
end;
|
||||||
|
|
||||||
(* Wait for the qmc process to complete *)
|
(* Wait for the qmc process to complete *)
|
||||||
|
try
|
||||||
ignore (Watchdog.join ());
|
ignore (Watchdog.join ());
|
||||||
terminate ()
|
terminate ()
|
||||||
|
with
|
||||||
|
| error ->
|
||||||
|
begin
|
||||||
|
terminate ();
|
||||||
|
raise error
|
||||||
|
end
|
||||||
|
|
||||||
|
@ -7,8 +7,8 @@ let full_run ?(start_dataserver=true) ezfio_filename =
|
|||||||
and scheduler =
|
and scheduler =
|
||||||
Scheduler.find ()
|
Scheduler.find ()
|
||||||
in
|
in
|
||||||
Printf.printf "Scheduler : %s\n" (Scheduler.to_string scheduler);
|
Printf.printf "Scheduler : %s\n%!" (Scheduler.to_string scheduler);
|
||||||
Printf.printf "Launcher : %s\n" (Launcher.to_string launcher );
|
Printf.printf "Launcher : %s\n%!" (Launcher.to_string launcher );
|
||||||
|
|
||||||
|
|
||||||
(* Create the node file *)
|
(* Create the node file *)
|
||||||
@ -147,13 +147,13 @@ let run a d ?q ?s ezfio_filename =
|
|||||||
|
|
||||||
(* Signal handler to Kill properly all the processes *)
|
(* Signal handler to Kill properly all the processes *)
|
||||||
let handler s =
|
let handler s =
|
||||||
Printf.printf "Received the %s signal... killing\n" (Signal.to_string s);
|
Printf.printf "QMC=Chem received the %s signal... killing\n%!" (Signal.to_string s);
|
||||||
Watchdog.kill ();
|
Watchdog.kill ();
|
||||||
in
|
in
|
||||||
List.iter [
|
List.iter [
|
||||||
|
Signal.int ;
|
||||||
Signal.term ;
|
Signal.term ;
|
||||||
Signal.quit ;
|
Signal.quit ;
|
||||||
Signal.int
|
|
||||||
]
|
]
|
||||||
~f:(fun x -> Signal.Expert.handle x handler)
|
~f:(fun x -> Signal.Expert.handle x handler)
|
||||||
;
|
;
|
||||||
|
@ -8,7 +8,7 @@ let _threads = ref [] ;;
|
|||||||
let kill () =
|
let kill () =
|
||||||
let kill pid =
|
let kill pid =
|
||||||
Signal.send_i Signal.int (`Pid pid);
|
Signal.send_i Signal.int (`Pid pid);
|
||||||
Printf.printf "Killed %d\n" (Pid.to_int pid)
|
Printf.printf "Killed %d\n%!" (Pid.to_int pid)
|
||||||
in
|
in
|
||||||
List.iter ~f:kill (!_list);
|
List.iter ~f:kill (!_list);
|
||||||
exit 1
|
exit 1
|
||||||
|
@ -1,7 +1,7 @@
|
|||||||
MAIN=qmcchem
|
MAIN=qmcchem
|
||||||
# Main program to build
|
# Main program to build
|
||||||
|
|
||||||
PACKAGES=-package core,sexplib.syntax,cryptokit,str,ZMQ
|
PACKAGES=-package core,pa_sexp_conv,cryptokit,str,ZMQ
|
||||||
# Required opam packages, for example:
|
# Required opam packages, for example:
|
||||||
# PACKAGES=-package core,sexplib.syntax
|
# PACKAGES=-package core,sexplib.syntax
|
||||||
|
|
||||||
|
@ -73,6 +73,7 @@ BEGIN_PROVIDER [ logical, primitives_reduced ]
|
|||||||
PROVIDE ao_power
|
PROVIDE ao_power
|
||||||
PROVIDE ao_coef
|
PROVIDE ao_coef
|
||||||
PROVIDE ao_nucl
|
PROVIDE ao_nucl
|
||||||
|
PROVIDE mo_fitcusp_normalization_before
|
||||||
do i=1,ao_num
|
do i=1,ao_num
|
||||||
if (ao_oned_p(i) /= 0.) then
|
if (ao_oned_p(i) /= 0.) then
|
||||||
l=ao_power(i,1)+ao_power(i,2)+ao_power(i,3)
|
l=ao_power(i,1)+ao_power(i,2)+ao_power(i,3)
|
||||||
|
@ -30,6 +30,12 @@ t = """
|
|||||||
$X_block_walk = $X_srmc_block_walk
|
$X_block_walk = $X_srmc_block_walk
|
||||||
$X_2_block_walk = $X_2_srmc_block_walk
|
$X_2_block_walk = $X_2_srmc_block_walk
|
||||||
endif
|
endif
|
||||||
|
else if (qmc_method == t_FKMC) then
|
||||||
|
PROVIDE E_loc_fkmc_block_walk
|
||||||
|
if (calc_$X) then
|
||||||
|
$X_block_walk = $X_fkmc_block_walk
|
||||||
|
$X_2_block_walk = $X_2_fkmc_block_walk
|
||||||
|
endif
|
||||||
endif
|
endif
|
||||||
|
|
||||||
END_PROVIDER
|
END_PROVIDER
|
||||||
|
@ -195,7 +195,7 @@ END_SHELL
|
|||||||
do k=1,walk_num_dmc
|
do k=1,walk_num_dmc
|
||||||
sum_weight += dmc_weight(k)
|
sum_weight += dmc_weight(k)
|
||||||
enddo
|
enddo
|
||||||
E0 = E_ref - log(real(walk_num_dmc)/real(walk_num)) * 0.1d0/dtime_step
|
E0 = E_ref - log(sum_weight/real(walk_num)) * 0.1d0 /dtime_step
|
||||||
|
|
||||||
! Branching
|
! Branching
|
||||||
integer :: ipos(walk_num_dmc_max), walk_num_dmc_new
|
integer :: ipos(walk_num_dmc_max), walk_num_dmc_new
|
||||||
@ -214,20 +214,22 @@ END_SHELL
|
|||||||
ipos(k) = k
|
ipos(k) = k
|
||||||
enddo
|
enddo
|
||||||
|
|
||||||
|
walk_num_dmc_new = walk_num_dmc
|
||||||
do k=1,walk_num_dmc
|
do k=1,walk_num_dmc
|
||||||
r = qmc_ranf()
|
r = qmc_ranf()
|
||||||
if (dmc_weight(k) > 1.d0) then
|
if (dmc_weight(k) > 1.d0) then
|
||||||
if ( 1.d0+r < dmc_weight(k) ) then
|
if ( 1.d0+r < dmc_weight(k) ) then
|
||||||
walk_num_dmc = walk_num_dmc+1
|
walk_num_dmc_new = walk_num_dmc_new+1
|
||||||
ipos(walk_num_dmc) = k
|
ipos(walk_num_dmc_new) = k
|
||||||
endif
|
endif
|
||||||
else
|
else
|
||||||
if ( r > dmc_weight(k) ) then
|
if ( r > dmc_weight(k) ) then
|
||||||
ipos(k) = ipos(walk_num_dmc)
|
ipos(k) = ipos(walk_num_dmc_new)
|
||||||
walk_num_dmc = walk_num_dmc-1
|
walk_num_dmc_new = walk_num_dmc_new-1
|
||||||
endif
|
endif
|
||||||
endif
|
endif
|
||||||
enddo
|
enddo
|
||||||
|
walk_num_dmc = walk_num_dmc_new
|
||||||
|
|
||||||
integer :: ipm
|
integer :: ipm
|
||||||
do k=1,walk_num_dmc
|
do k=1,walk_num_dmc
|
||||||
@ -328,7 +330,7 @@ BEGIN_PROVIDER [ integer, walk_num_dmc_max ]
|
|||||||
BEGIN_DOC
|
BEGIN_DOC
|
||||||
! Max number of walkers in DMC
|
! Max number of walkers in DMC
|
||||||
END_DOC
|
END_DOC
|
||||||
walk_num_dmc_max = 3 * walk_num
|
walk_num_dmc_max = max(3 * walk_num, 30)
|
||||||
END_PROVIDER
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
|
375
src/SAMPLING/fkmc_step.irp.f
Normal file
375
src/SAMPLING/fkmc_step.irp.f
Normal file
@ -0,0 +1,375 @@
|
|||||||
|
! Providers of *_fkmc_block_walk
|
||||||
|
!==============================
|
||||||
|
BEGIN_SHELL [ /usr/bin/python ]
|
||||||
|
from properties import *
|
||||||
|
|
||||||
|
t = """
|
||||||
|
BEGIN_PROVIDER [ $T, $X_fkmc_block_walk $D1 ]
|
||||||
|
&BEGIN_PROVIDER [ $T, $X_fkmc_block_walk_kahan $D2 ]
|
||||||
|
&BEGIN_PROVIDER [ $T, $X_2_fkmc_block_walk $D1 ]
|
||||||
|
&BEGIN_PROVIDER [ $T, $X_2_fkmc_block_walk_kahan $D2 ]
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! fkMC averages of $X. Computed in E_loc_fkmc_block_walk
|
||||||
|
END_DOC
|
||||||
|
$X_fkmc_block_walk = 0.d0
|
||||||
|
$X_fkmc_block_walk_kahan = 0.d0
|
||||||
|
$X_2_fkmc_block_walk = 0.d0
|
||||||
|
$X_2_fkmc_block_walk_kahan = 0.d0
|
||||||
|
END_PROVIDER
|
||||||
|
"""
|
||||||
|
for p in properties:
|
||||||
|
if p[1] != 'e_loc':
|
||||||
|
if p[2] == "":
|
||||||
|
D1 = ""
|
||||||
|
D2 = ", (3)"
|
||||||
|
else:
|
||||||
|
D1 = ", ("+p[2][1:-1]+")"
|
||||||
|
D2 = ", ("+p[2][1:-1]+",3)"
|
||||||
|
print t.replace("$X",p[1]).replace("$T",p[0]).replace("$D1",D1).replace("$D2",D2)
|
||||||
|
|
||||||
|
END_SHELL
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
BEGIN_PROVIDER [ double precision, E_loc_fkmc_block_walk ]
|
||||||
|
&BEGIN_PROVIDER [ double precision, E_loc_2_fkmc_block_walk ]
|
||||||
|
&BEGIN_PROVIDER [ double precision, E_loc_fkmc_block_walk_kahan, (3) ]
|
||||||
|
&BEGIN_PROVIDER [ double precision, E_loc_2_fkmc_block_walk_kahan, (3) ]
|
||||||
|
implicit none
|
||||||
|
include '../types.F'
|
||||||
|
BEGIN_DOC
|
||||||
|
! Properties averaged over the block using the FKMC method
|
||||||
|
END_DOC
|
||||||
|
|
||||||
|
integer, parameter :: BIRTH=1, DEATH=2
|
||||||
|
real, allocatable :: elec_coord_tmp(:,:,:)
|
||||||
|
integer :: mod_align
|
||||||
|
double precision :: E_loc_save(walk_num_dmc_max)
|
||||||
|
double precision :: E_loc_save_tmp(walk_num_dmc_max)
|
||||||
|
double precision :: psi_value_save(walk_num)
|
||||||
|
double precision :: psi_value_save_tmp(walk_num)
|
||||||
|
double precision :: fkmc_weight(walk_num)
|
||||||
|
double precision :: delta(walk_num)
|
||||||
|
double precision, allocatable :: psi_grad_psi_inv_save(:,:,:)
|
||||||
|
double precision, allocatable :: psi_grad_psi_inv_save_tmp(:,:,:)
|
||||||
|
double precision, allocatable :: fkmc_clock_tmp(:,:)
|
||||||
|
!DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: psi_grad_psi_inv_save
|
||||||
|
!DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: psi_grad_psi_inv_save_tmp
|
||||||
|
!DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: E_loc_save
|
||||||
|
!DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: E_loc_save_tmp
|
||||||
|
!DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: psi_value_save
|
||||||
|
!DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: psi_value_save_tmp
|
||||||
|
!DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: fkmc_weight
|
||||||
|
!DIR$ ATTRIBUTES ALIGN : $IRP_ALIGN :: fkmc_clock_tmp
|
||||||
|
allocate ( psi_grad_psi_inv_save(elec_num_8,3,walk_num), &
|
||||||
|
psi_grad_psi_inv_save_tmp(elec_num_8,3,walk_num), &
|
||||||
|
elec_coord_tmp(mod_align(elec_num+1),3,walk_num), &
|
||||||
|
fkmc_clock_tmp(2,walk_num) )
|
||||||
|
psi_value_save = 0.d0
|
||||||
|
psi_value_save_tmp = 0.d0
|
||||||
|
fkmc_weight = 1.d0
|
||||||
|
|
||||||
|
! Initialization
|
||||||
|
if (vmc_algo /= t_Brownian) then
|
||||||
|
call abrt(irp_here,'FKMC should run with Brownian algorithm')
|
||||||
|
endif
|
||||||
|
|
||||||
|
integer :: k, i_walk, i_step
|
||||||
|
|
||||||
|
BEGIN_SHELL [ /usr/bin/python ]
|
||||||
|
from properties import *
|
||||||
|
t = """
|
||||||
|
if (calc_$X) then
|
||||||
|
!DIR$ VECTOR ALIGNED
|
||||||
|
$X_fkmc_block_walk = 0.d0
|
||||||
|
!DIR$ VECTOR ALIGNED
|
||||||
|
$X_fkmc_block_walk_kahan = 0.d0
|
||||||
|
!DIR$ VECTOR ALIGNED
|
||||||
|
$X_2_fkmc_block_walk = 0.d0
|
||||||
|
!DIR$ VECTOR ALIGNED
|
||||||
|
$X_2_fkmc_block_walk_kahan = 0.d0
|
||||||
|
endif
|
||||||
|
"""
|
||||||
|
for p in properties:
|
||||||
|
print t.replace("$X",p[1])
|
||||||
|
END_SHELL
|
||||||
|
|
||||||
|
logical :: loop
|
||||||
|
integer*8 :: cpu0, cpu1, cpu2, count_rate, count_max
|
||||||
|
|
||||||
|
loop = .True.
|
||||||
|
call system_clock(cpu0, count_rate, count_max)
|
||||||
|
cpu2 = cpu0
|
||||||
|
|
||||||
|
block_weight = 0.d0
|
||||||
|
|
||||||
|
real, external :: accep_rate
|
||||||
|
double precision :: thr
|
||||||
|
|
||||||
|
thr = 2.d0/time_step_sq
|
||||||
|
|
||||||
|
logical :: first_loop
|
||||||
|
first_loop = .True.
|
||||||
|
|
||||||
|
do while (loop)
|
||||||
|
|
||||||
|
! Every walker makes a step
|
||||||
|
do i_walk=1,walk_num
|
||||||
|
|
||||||
|
if (.not.first_loop) then
|
||||||
|
integer :: i,j,l
|
||||||
|
do l=1,3
|
||||||
|
do i=1,elec_num+1
|
||||||
|
elec_coord(i,l) = elec_coord_full(i,l,i_walk)
|
||||||
|
enddo
|
||||||
|
do i=1,elec_num
|
||||||
|
psi_grad_psi_inv_x(i) = psi_grad_psi_inv_save(i,1,i_walk)
|
||||||
|
psi_grad_psi_inv_y(i) = psi_grad_psi_inv_save(i,2,i_walk)
|
||||||
|
psi_grad_psi_inv_z(i) = psi_grad_psi_inv_save(i,3,i_walk)
|
||||||
|
enddo
|
||||||
|
psi_value = psi_value_save(i_walk)
|
||||||
|
E_loc = E_loc_save(i_walk)
|
||||||
|
enddo
|
||||||
|
SOFT_TOUCH elec_coord psi_grad_psi_inv_x psi_grad_psi_inv_y psi_grad_psi_inv_z psi_value E_loc
|
||||||
|
else
|
||||||
|
do l=1,3
|
||||||
|
do i=1,elec_num+1
|
||||||
|
elec_coord(i,l) = elec_coord_full(i,l,i_walk)
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
TOUCH elec_coord
|
||||||
|
E_loc_save(i_walk) = E_loc
|
||||||
|
psi_value_save(i_walk) = psi_value
|
||||||
|
endif
|
||||||
|
|
||||||
|
double precision :: p,q
|
||||||
|
real :: delta_x
|
||||||
|
logical :: accepted
|
||||||
|
call brownian_step(p,q,accepted,delta_x)
|
||||||
|
|
||||||
|
if ( psi_value * psi_value_save(i_walk) >= 0.d0 ) then
|
||||||
|
delta(i_walk) = ((E_loc+E_loc_save(i_walk))*0.5d0 - E_ref) * p
|
||||||
|
if ( delta(i_walk) > thr ) then
|
||||||
|
delta(i_walk) = thr
|
||||||
|
else if ( delta(i_walk) < -thr ) then
|
||||||
|
delta(i_walk) = -thr
|
||||||
|
endif
|
||||||
|
fkmc_weight(i_walk) = dexp(-dtime_step*delta(i_walk))
|
||||||
|
elec_coord(elec_num+1,1) += p*time_step
|
||||||
|
elec_coord(elec_num+1,2) = E_loc
|
||||||
|
elec_coord(elec_num+1,3) = fkmc_weight(i_walk)
|
||||||
|
do l=1,3
|
||||||
|
do i=1,elec_num+1
|
||||||
|
elec_coord_full(i,l,i_walk) = elec_coord(i,l)
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
do i=1,elec_num
|
||||||
|
psi_grad_psi_inv_save(i,1,i_walk) = psi_grad_psi_inv_x(i)
|
||||||
|
psi_grad_psi_inv_save(i,2,i_walk) = psi_grad_psi_inv_y(i)
|
||||||
|
psi_grad_psi_inv_save(i,3,i_walk) = psi_grad_psi_inv_z(i)
|
||||||
|
enddo
|
||||||
|
|
||||||
|
psi_value_save(i_walk) = psi_value
|
||||||
|
E_loc_save(i_walk) = E_loc
|
||||||
|
|
||||||
|
BEGIN_SHELL [ /usr/bin/python ]
|
||||||
|
from properties import *
|
||||||
|
t = """
|
||||||
|
if (calc_$X) then
|
||||||
|
! Kahan's summation algorithm to compute these sums reducing the rounding error:
|
||||||
|
! $X_fkmc_block_walk += $X * fkmc_weight(i_walk)
|
||||||
|
! $X_2_fkmc_block_walk += $X_2 * fkmc_weight(i_walk)
|
||||||
|
! see http://en.wikipedia.org/wiki/Kahan_summation_algorithm
|
||||||
|
|
||||||
|
$X_fkmc_block_walk_kahan($D2 3) = $X * fkmc_weight(i_walk) - $X_fkmc_block_walk_kahan($D2 1)
|
||||||
|
$X_fkmc_block_walk_kahan($D2 2) = $X_fkmc_block_walk $D1 + $X_fkmc_block_walk_kahan($D2 3)
|
||||||
|
$X_fkmc_block_walk_kahan($D2 1) = ($X_fkmc_block_walk_kahan($D2 2) - $X_fkmc_block_walk $D1 ) &
|
||||||
|
- $X_fkmc_block_walk_kahan($D2 3)
|
||||||
|
$X_fkmc_block_walk $D1 = $X_fkmc_block_walk_kahan($D2 2)
|
||||||
|
|
||||||
|
|
||||||
|
$X_2_fkmc_block_walk_kahan($D2 3) = $X_2 * fkmc_weight(i_walk) - $X_2_fkmc_block_walk_kahan($D2 1)
|
||||||
|
$X_2_fkmc_block_walk_kahan($D2 2) = $X_2_fkmc_block_walk $D1 + $X_2_fkmc_block_walk_kahan($D2 3)
|
||||||
|
$X_2_fkmc_block_walk_kahan($D2 1) = ($X_2_fkmc_block_walk_kahan($D2 2) - $X_2_fkmc_block_walk $D1 ) &
|
||||||
|
- $X_2_fkmc_block_walk_kahan($D2 3)
|
||||||
|
$X_2_fkmc_block_walk $D1 = $X_2_fkmc_block_walk_kahan($D2 2)
|
||||||
|
endif
|
||||||
|
"""
|
||||||
|
for p in properties:
|
||||||
|
if p[2] == "":
|
||||||
|
D1 = ""
|
||||||
|
D2 = ""
|
||||||
|
else:
|
||||||
|
D1 = "("+":"*(p[2].count(',')+1)+")"
|
||||||
|
D2 = ":"*(p[2].count(',')+1)+","
|
||||||
|
print t.replace("$X",p[1]).replace("$D1",D1).replace("$D2",D2)
|
||||||
|
|
||||||
|
END_SHELL
|
||||||
|
|
||||||
|
block_weight += fkmc_weight(i_walk)
|
||||||
|
|
||||||
|
else
|
||||||
|
fkmc_weight(i_walk) = 0.d0
|
||||||
|
delta(i_walk) = 1.d5
|
||||||
|
endif
|
||||||
|
|
||||||
|
enddo
|
||||||
|
|
||||||
|
! Compute the new weight of the population
|
||||||
|
double precision :: sum_weight
|
||||||
|
sum_weight = 0.d0
|
||||||
|
do k=1,walk_num
|
||||||
|
sum_weight += fkmc_weight(k)
|
||||||
|
enddo
|
||||||
|
|
||||||
|
do k=1,walk_num
|
||||||
|
do l=1,3
|
||||||
|
do i=1,elec_num+1
|
||||||
|
elec_coord_tmp(i,l,k) = elec_coord_full(i,l,k)
|
||||||
|
enddo
|
||||||
|
do i=1,elec_num
|
||||||
|
psi_grad_psi_inv_save_tmp(i,l,k) = psi_grad_psi_inv_save(i,l,k)
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
psi_value_save_tmp(k) = psi_value_save(k)
|
||||||
|
E_loc_save_tmp(k) = E_loc_save(k)
|
||||||
|
if (fkmc_weight(k) == 0.d0) then
|
||||||
|
fkmc_clock(DEATH,k) = -1.d0
|
||||||
|
endif
|
||||||
|
if ( delta(k) <= 0.d0 ) then
|
||||||
|
fkmc_clock_tmp(BIRTH,k) = fkmc_clock(BIRTH,k) +time_step * delta(k)
|
||||||
|
fkmc_clock_tmp(DEATH,k) = fkmc_clock(DEATH,k)
|
||||||
|
else
|
||||||
|
fkmc_clock_tmp(BIRTH,k) = fkmc_clock(BIRTH,k)
|
||||||
|
fkmc_clock_tmp(DEATH,k) = fkmc_clock(DEATH,k) -time_step * delta(k)
|
||||||
|
endif
|
||||||
|
enddo
|
||||||
|
|
||||||
|
! Reconfiguration
|
||||||
|
! ===============
|
||||||
|
|
||||||
|
! Identify first which walkers will be killed to place branched walkers there
|
||||||
|
! later
|
||||||
|
|
||||||
|
double precision, external :: qmc_ranf
|
||||||
|
integer :: ipm, m
|
||||||
|
integer :: killed(walk_num)
|
||||||
|
|
||||||
|
m=1
|
||||||
|
do k=1,walk_num
|
||||||
|
fkmc_clock(DEATH,k) = fkmc_clock_tmp(DEATH,k)
|
||||||
|
if (fkmc_clock_tmp(DEATH,k) <= 0.d0) then
|
||||||
|
killed(m) = k
|
||||||
|
m += 1
|
||||||
|
fkmc_clock(DEATH,k) = -dlog(qmc_ranf())
|
||||||
|
fkmc_clock(BIRTH,k) = -dlog(qmc_ranf())
|
||||||
|
ipm = k
|
||||||
|
do while (ipm == k)
|
||||||
|
ipm = 1 + int (walk_num*qmc_ranf())
|
||||||
|
enddo
|
||||||
|
do l=1,3
|
||||||
|
do i=1,elec_num+1
|
||||||
|
elec_coord_full(i,l,k) = elec_coord_tmp(i,l,ipm)
|
||||||
|
enddo
|
||||||
|
do i=1,elec_num
|
||||||
|
psi_grad_psi_inv_save(i,l,k) = psi_grad_psi_inv_save_tmp(i,l,ipm)
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
psi_value_save(k) = psi_value_save_tmp(ipm)
|
||||||
|
E_loc_save(k) = E_loc_save_tmp(ipm)
|
||||||
|
endif
|
||||||
|
enddo
|
||||||
|
killed(m) = 0
|
||||||
|
|
||||||
|
m=1
|
||||||
|
do k=1,walk_num
|
||||||
|
fkmc_clock(BIRTH,k) = fkmc_clock_tmp(BIRTH,k)
|
||||||
|
if (fkmc_clock_tmp(BIRTH,k) <= 0.d0) then
|
||||||
|
fkmc_clock(BIRTH,k) = -dlog(qmc_ranf())
|
||||||
|
if (killed(m) == 0) then
|
||||||
|
ipm = k
|
||||||
|
do while (ipm == k)
|
||||||
|
ipm = 1 + int (walk_num*qmc_ranf())
|
||||||
|
enddo
|
||||||
|
else
|
||||||
|
ipm = killed(m)
|
||||||
|
m +=1
|
||||||
|
endif
|
||||||
|
fkmc_clock(BIRTH,ipm) = -dlog(qmc_ranf())
|
||||||
|
fkmc_clock(DEATH,ipm) = -dlog(qmc_ranf())
|
||||||
|
do l=1,3
|
||||||
|
do i=1,elec_num+1
|
||||||
|
elec_coord_full(i,l,ipm) = elec_coord_tmp(i,l,k)
|
||||||
|
enddo
|
||||||
|
do i=1,elec_num
|
||||||
|
psi_grad_psi_inv_save(i,l,ipm) = psi_grad_psi_inv_save_tmp(i,l,k)
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
psi_value_save(ipm) = psi_value_save_tmp(k)
|
||||||
|
E_loc_save(ipm) = E_loc_save_tmp(k)
|
||||||
|
|
||||||
|
endif
|
||||||
|
|
||||||
|
enddo
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
call system_clock(cpu1, count_rate, count_max)
|
||||||
|
if (cpu1 < cpu0) then
|
||||||
|
cpu1 = cpu1+cpu0
|
||||||
|
endif
|
||||||
|
loop = dble(cpu1-cpu0) < dble(block_time)*dble(count_rate)
|
||||||
|
if (cpu1-cpu2 > count_rate) then
|
||||||
|
integer :: do_run
|
||||||
|
call get_running(do_run)
|
||||||
|
loop = do_run == t_Running
|
||||||
|
cpu2 = cpu1
|
||||||
|
endif
|
||||||
|
|
||||||
|
! Update E_ref to take into account the weight of the population
|
||||||
|
E_ref -= dlog(sum_weight / dble(walk_num) ) / time_step
|
||||||
|
SOFT_TOUCH elec_coord_full E_ref
|
||||||
|
|
||||||
|
first_loop = .False.
|
||||||
|
|
||||||
|
enddo
|
||||||
|
|
||||||
|
double precision :: factor
|
||||||
|
factor = 1.d0/block_weight
|
||||||
|
SOFT_TOUCH block_weight
|
||||||
|
|
||||||
|
BEGIN_SHELL [ /usr/bin/python ]
|
||||||
|
from properties import *
|
||||||
|
t = """
|
||||||
|
if (calc_$X) then
|
||||||
|
$X_fkmc_block_walk *= factor
|
||||||
|
$X_2_fkmc_block_walk *= factor
|
||||||
|
endif
|
||||||
|
"""
|
||||||
|
for p in properties:
|
||||||
|
print t.replace("$X",p[1])
|
||||||
|
END_SHELL
|
||||||
|
|
||||||
|
deallocate ( elec_coord_tmp, psi_grad_psi_inv_save, psi_grad_psi_inv_save_tmp, &
|
||||||
|
fkmc_clock_tmp )
|
||||||
|
|
||||||
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
BEGIN_PROVIDER [ double precision, fkmc_clock, (2,walk_num) ]
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! Branching clocks for the FKMC algotithm. (1,:) is the birth clock and
|
||||||
|
! (2,:) is the death clock.
|
||||||
|
END_DOC
|
||||||
|
integer :: i
|
||||||
|
double precision, external :: qmc_ranf
|
||||||
|
do i=1, walk_num
|
||||||
|
fkmc_clock(1,i) = -dlog(qmc_ranf())
|
||||||
|
fkmc_clock(2,i) = -dlog(qmc_ranf())
|
||||||
|
enddo
|
||||||
|
|
||||||
|
END_PROVIDER
|
||||||
|
|
@ -133,7 +133,9 @@ END_SHELL
|
|||||||
elec_coord(i,l) = elec_coord_full(i,l,i_walk)
|
elec_coord(i,l) = elec_coord_full(i,l,i_walk)
|
||||||
enddo
|
enddo
|
||||||
enddo
|
enddo
|
||||||
SOFT_TOUCH elec_coord
|
TOUCH elec_coord
|
||||||
|
psi_value_save(i_walk) = psi_value
|
||||||
|
E_loc_save(i_walk) = E_loc
|
||||||
endif
|
endif
|
||||||
|
|
||||||
double precision :: p,q
|
double precision :: p,q
|
||||||
|
@ -6,7 +6,6 @@ data = [ \
|
|||||||
("nuclei_nucl_num" , "integer" , "" ),
|
("nuclei_nucl_num" , "integer" , "" ),
|
||||||
("nuclei_nucl_charge" , "real" , "(nucl_num)" ),
|
("nuclei_nucl_charge" , "real" , "(nucl_num)" ),
|
||||||
("nuclei_nucl_coord" , "real" , "(nucl_num,3)" ),
|
("nuclei_nucl_coord" , "real" , "(nucl_num,3)" ),
|
||||||
("nuclei_nucl_fitcusp_radius" , "real" , "(nucl_num)" ),
|
|
||||||
("mo_basis_mo_coef" , "real" , "(ao_num,mo_tot_num)" ),
|
("mo_basis_mo_coef" , "real" , "(ao_num,mo_tot_num)" ),
|
||||||
("electrons_elec_fitcusp_radius" , "real" , "" ),
|
("electrons_elec_fitcusp_radius" , "real" , "" ),
|
||||||
("electrons_elec_alpha_num" , "integer" , "" ),
|
("electrons_elec_alpha_num" , "integer" , "" ),
|
||||||
@ -38,9 +37,9 @@ data = [ \
|
|||||||
("simulation_time_step" , "real" , "" ),
|
("simulation_time_step" , "real" , "" ),
|
||||||
("simulation_srmc_projection_time" , "real" , "" ),
|
("simulation_srmc_projection_time" , "real" , "" ),
|
||||||
("simulation_method" , "character*(32)", "" ),
|
("simulation_method" , "character*(32)", "" ),
|
||||||
|
("simulation_nucl_fitcusp_factor" , "real" , "" ),
|
||||||
("simulation_save_data" , "logical" , "" ),
|
("simulation_save_data" , "logical" , "" ),
|
||||||
("simulation_print_level" , "integer" , "" ),
|
("simulation_print_level" , "integer" , "" ),
|
||||||
("simulation_do_nucl_fitcusp" , "logical" , "" ),
|
|
||||||
("simulation_sampling" , "character*(32)", "" ),
|
("simulation_sampling" , "character*(32)", "" ),
|
||||||
("simulation_ci_threshold" , "double precision" , "" ),
|
("simulation_ci_threshold" , "double precision" , "" ),
|
||||||
("simulation_http_server" , "character*(128)", "" ),
|
("simulation_http_server" , "character*(128)", "" ),
|
||||||
|
103
src/mo.irp.f
103
src/mo.irp.f
@ -273,6 +273,15 @@ END_PROVIDER
|
|||||||
enddo
|
enddo
|
||||||
endif
|
endif
|
||||||
|
|
||||||
|
do i=1,mo_num
|
||||||
|
do j=1,elec_num
|
||||||
|
mo_value_transp(i,j) *= mo_cusp_rescale(i)
|
||||||
|
mo_grad_transp_x(i,j) *= mo_cusp_rescale(i)
|
||||||
|
mo_grad_transp_y(i,j) *= mo_cusp_rescale(i)
|
||||||
|
mo_grad_transp_z(i,j) *= mo_cusp_rescale(i)
|
||||||
|
mo_lapl_transp(i,j) *= mo_cusp_rescale(i)
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
END_PROVIDER
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
@ -401,6 +410,7 @@ BEGIN_PROVIDER [ double precision , mo_value_at_nucl, (mo_num_8,nucl_num) ]
|
|||||||
integer :: i, j, k, l
|
integer :: i, j, k, l
|
||||||
real :: ao_value_at_nucl_no_S(ao_num)
|
real :: ao_value_at_nucl_no_S(ao_num)
|
||||||
|
|
||||||
|
PROVIDE mo_fitcusp_normalization_before
|
||||||
do k=1,nucl_num
|
do k=1,nucl_num
|
||||||
point(1) = nucl_coord(k,1)
|
point(1) = nucl_coord(k,1)
|
||||||
point(2) = nucl_coord(k,2)
|
point(2) = nucl_coord(k,2)
|
||||||
@ -466,6 +476,99 @@ END_PROVIDER
|
|||||||
FREE ao_value_p ao_grad_p ao_lapl_p ao_axis_grad_p ao_oned_grad_p ao_oned_prim_grad_p ao_oned_lapl_p ao_axis_lapl_p ao_oned_prim_lapl_p ao_oned_p ao_oned_prim_p ao_axis_p ao_axis_power_p
|
FREE ao_value_p ao_grad_p ao_lapl_p ao_axis_grad_p ao_oned_grad_p ao_oned_prim_grad_p ao_oned_lapl_p ao_axis_lapl_p ao_oned_prim_lapl_p ao_oned_p ao_oned_prim_p ao_axis_p ao_axis_power_p
|
||||||
SOFT_TOUCH point
|
SOFT_TOUCH point
|
||||||
|
|
||||||
|
END_PROVIDER
|
||||||
|
|
||||||
|
BEGIN_PROVIDER [ double precision, mo_fitcusp_normalization_before, (mo_tot_num) ]
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! Renormalization factor of MOs due to cusp fitting
|
||||||
|
END_DOC
|
||||||
|
include 'constants.F'
|
||||||
|
integer :: i,j,k,l
|
||||||
|
double precision :: dr, r, f, t
|
||||||
|
integer, save :: ifirst = 0
|
||||||
|
|
||||||
|
if (ifirst == 0) then
|
||||||
|
ifirst = 1
|
||||||
|
mo_fitcusp_normalization_before = 0.d0
|
||||||
|
do k=1,nucl_num
|
||||||
|
dr = nucl_fitcusp_radius(k)*1.d-2
|
||||||
|
point(1) = nucl_coord(k,1)
|
||||||
|
point(2) = nucl_coord(k,2)
|
||||||
|
point(3) = nucl_coord(k,3)-dr
|
||||||
|
do l=1,101
|
||||||
|
r = point(3) + dr
|
||||||
|
point(3) = r
|
||||||
|
TOUCH point
|
||||||
|
f = dfour_pi*r*r*dr
|
||||||
|
do i=1,mo_tot_num
|
||||||
|
mo_fitcusp_normalization_before(i) += f*mo_value_p(i)**2
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
endif
|
||||||
|
|
||||||
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
|
BEGIN_PROVIDER [ double precision, mo_fitcusp_normalization_after, (mo_tot_num) ]
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! Renormalization factor of MOs due to cusp fitting
|
||||||
|
END_DOC
|
||||||
|
include 'constants.F'
|
||||||
|
integer :: i,j,k,l
|
||||||
|
double precision :: dr, r, f, t, t2
|
||||||
|
integer, save :: ifirst = 0
|
||||||
|
|
||||||
|
PROVIDE primitives_reduced
|
||||||
|
if (ifirst == 0) then
|
||||||
|
ifirst = 1
|
||||||
|
mo_fitcusp_normalization_after = 0.d0
|
||||||
|
do k=1,nucl_num
|
||||||
|
dr = nucl_fitcusp_radius(k)*1.d-2
|
||||||
|
point(1) = nucl_coord(k,1)
|
||||||
|
point(2) = nucl_coord(k,2)
|
||||||
|
point(3) = nucl_coord(k,3)- dr
|
||||||
|
do l=1,101
|
||||||
|
point(3) = point(3)+ dr
|
||||||
|
TOUCH point nucl_fitcusp_param primitives_reduced mo_coef
|
||||||
|
r = point(3)
|
||||||
|
f = dfour_pi*r*r*dr
|
||||||
|
do i=1,mo_num
|
||||||
|
t = 0.d0
|
||||||
|
do j=1,ao_num
|
||||||
|
if ( (ao_nucl(j) /= k).or.(ao_power(j,4) > 0) ) then
|
||||||
|
t = t + mo_coef(j,i) * ao_value_p(j)
|
||||||
|
endif
|
||||||
|
enddo
|
||||||
|
t = t + nucl_fitcusp_param(1,i,k) + &
|
||||||
|
r * (nucl_fitcusp_param(2,i,k) + &
|
||||||
|
r * (nucl_fitcusp_param(3,i,k) + &
|
||||||
|
r * nucl_fitcusp_param(4,i,k) ))
|
||||||
|
mo_fitcusp_normalization_after(i) += t*t*f
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
enddo
|
||||||
|
endif
|
||||||
|
|
||||||
|
END_PROVIDER
|
||||||
|
|
||||||
|
BEGIN_PROVIDER [ real, mo_cusp_rescale, (mo_tot_num) ]
|
||||||
|
implicit none
|
||||||
|
BEGIN_DOC
|
||||||
|
! Rescaling coefficient to normalize MOs after applying fitcusp
|
||||||
|
END_DOC
|
||||||
|
integer :: i
|
||||||
|
if (do_nucl_fitcusp) then
|
||||||
|
do i=1,mo_tot_num
|
||||||
|
! mo_cusp_rescale(i) = dsqrt(mo_fitcusp_normalization_before(i) / mo_fitcusp_normalization_after(i))
|
||||||
|
mo_cusp_rescale(i) = 1.d0/dsqrt(1.d0 - mo_fitcusp_normalization_before(i) + mo_fitcusp_normalization_after(i))
|
||||||
|
enddo
|
||||||
|
else
|
||||||
|
mo_cusp_rescale = 1.d0
|
||||||
|
endif
|
||||||
|
|
||||||
END_PROVIDER
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
|
@ -125,17 +125,20 @@ BEGIN_PROVIDER [ real, nucl_fitcusp_radius, (nucl_num) ]
|
|||||||
BEGIN_DOC
|
BEGIN_DOC
|
||||||
! Distance threshold for the fit
|
! Distance threshold for the fit
|
||||||
END_DOC
|
END_DOC
|
||||||
real :: def(nucl_num)
|
real :: def(nucl_num), factor
|
||||||
integer :: k
|
integer :: k
|
||||||
|
real, parameter :: a = 1.74891
|
||||||
|
real, parameter :: b = 0.126057
|
||||||
|
|
||||||
if (.not.do_nucl_fitcusp) then
|
if (.not. do_nucl_fitcusp) then
|
||||||
nucl_fitcusp_radius = 0.d0
|
nucl_fitcusp_radius = 0.d0
|
||||||
return
|
return
|
||||||
endif
|
endif
|
||||||
|
|
||||||
do k=1,nucl_num
|
do k=1,nucl_num
|
||||||
nucl_fitcusp_radius(k) = .5/nucl_charge(k)
|
nucl_fitcusp_radius(k) = nucl_fitcusp_factor/(a*nucl_charge(k)+b)
|
||||||
enddo
|
enddo
|
||||||
call get_nuclei_nucl_fitcusp_radius(nucl_fitcusp_radius)
|
|
||||||
! Avoid dummy atoms
|
! Avoid dummy atoms
|
||||||
do k=1,nucl_num
|
do k=1,nucl_num
|
||||||
if (nucl_charge(k) < 5.d-1) then
|
if (nucl_charge(k) < 5.d-1) then
|
||||||
|
@ -148,7 +148,7 @@ BEGIN_PROVIDER [ integer, qmc_method ]
|
|||||||
implicit none
|
implicit none
|
||||||
include 'types.F'
|
include 'types.F'
|
||||||
BEGIN_DOC
|
BEGIN_DOC
|
||||||
! qmc_method : Calculation method. Can be t_VMC, t_DMC, t_SRMC
|
! qmc_method : Calculation method. Can be t_VMC, t_DMC, t_SRMC, t_FKMC
|
||||||
END_DOC
|
END_DOC
|
||||||
character*(32) :: method
|
character*(32) :: method
|
||||||
method = types(t_VMC)
|
method = types(t_VMC)
|
||||||
@ -160,8 +160,10 @@ BEGIN_PROVIDER [ integer, qmc_method ]
|
|||||||
qmc_method = t_DMC
|
qmc_method = t_DMC
|
||||||
else if (method == types(t_SRMC)) then
|
else if (method == types(t_SRMC)) then
|
||||||
qmc_method = t_SRMC
|
qmc_method = t_SRMC
|
||||||
|
else if (method == types(t_FKMC)) then
|
||||||
|
qmc_method = t_FKMC
|
||||||
else
|
else
|
||||||
call abrt(irp_here, 'Method should be ( VMC | DMC | SRMC )')
|
call abrt(irp_here, 'Method should be ( VMC | DMC | SRMC | FKMC )')
|
||||||
endif
|
endif
|
||||||
|
|
||||||
call cinfo(irp_here,'qmc_method',trim(method))
|
call cinfo(irp_here,'qmc_method',trim(method))
|
||||||
@ -250,17 +252,22 @@ BEGIN_PROVIDER [ character*(64), hostname]
|
|||||||
END_PROVIDER
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
BEGIN_PROVIDER [ logical, do_nucl_fitcusp ]
|
BEGIN_PROVIDER [ real, nucl_fitcusp_factor ]
|
||||||
|
&BEGIN_PROVIDER [ logical, do_nucl_fitcusp ]
|
||||||
implicit none
|
implicit none
|
||||||
BEGIN_DOC
|
BEGIN_DOC
|
||||||
! If true, do the fit of the electron-nucleus cusp
|
! The electron-nucleus cusp fitting is done between 0 and r_c,
|
||||||
|
! where r_c is chosen as nucl_fitcusp_factor * (radius_of_1s AO)
|
||||||
END_DOC
|
END_DOC
|
||||||
do_nucl_fitcusp = .True.
|
nucl_fitcusp_factor = 0.
|
||||||
call get_simulation_do_nucl_fitcusp(do_nucl_fitcusp)
|
call get_simulation_nucl_fitcusp_factor(nucl_fitcusp_factor)
|
||||||
call linfo(irp_here,'do_nucl_fitcusp',do_nucl_fitcusp)
|
do_nucl_fitcusp = nucl_fitcusp_factor > 0.
|
||||||
|
call info(irp_here,'nucl_fitcusp_factor',nucl_fitcusp_factor)
|
||||||
|
|
||||||
END_PROVIDER
|
END_PROVIDER
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
BEGIN_PROVIDER [ integer, vmc_algo ]
|
BEGIN_PROVIDER [ integer, vmc_algo ]
|
||||||
implicit none
|
implicit none
|
||||||
include 'types.F'
|
include 'types.F'
|
||||||
@ -283,6 +290,9 @@ BEGIN_PROVIDER [ integer, vmc_algo ]
|
|||||||
if (qmc_method == t_SRMC) then
|
if (qmc_method == t_SRMC) then
|
||||||
stop 'Langevin incompatible with SRMC'
|
stop 'Langevin incompatible with SRMC'
|
||||||
endif
|
endif
|
||||||
|
if (qmc_method == t_FKMC) then
|
||||||
|
stop 'Langevin incompatible with FKMC'
|
||||||
|
endif
|
||||||
else if (Sampling == types(t_MTM)) then
|
else if (Sampling == types(t_MTM)) then
|
||||||
vmc_algo = t_MTM
|
vmc_algo = t_MTM
|
||||||
else
|
else
|
||||||
|
@ -6,6 +6,7 @@
|
|||||||
integer, parameter :: t_VMC = 7
|
integer, parameter :: t_VMC = 7
|
||||||
integer, parameter :: t_DMC = 8
|
integer, parameter :: t_DMC = 8
|
||||||
integer, parameter :: t_SRMC = 9
|
integer, parameter :: t_SRMC = 9
|
||||||
|
integer, parameter :: t_FKMC = 10
|
||||||
|
|
||||||
integer, parameter :: t_Simple = 11
|
integer, parameter :: t_Simple = 11
|
||||||
integer, parameter :: t_None = 12
|
integer, parameter :: t_None = 12
|
||||||
@ -26,7 +27,7 @@
|
|||||||
'VMC ', &
|
'VMC ', &
|
||||||
'DMC ', &
|
'DMC ', &
|
||||||
'SRMC ', &
|
'SRMC ', &
|
||||||
' ', &
|
'FKMC ', &
|
||||||
'Simple ', &
|
'Simple ', &
|
||||||
'None ', &
|
'None ', &
|
||||||
' ', &
|
' ', &
|
||||||
|
Loading…
Reference in New Issue
Block a user