Merge branch 'master' of ssh://git.code.sf.net/p/irpf90/code

* 'master' of ssh://git.code.sf.net/p/irpf90/code: (23 commits)
  IRPF90_MAKE variable
  Gitignore file added
  Error messages cleaned
  Compile external sources first
  Compile first external sources
  support for recursive subroutines in indent
  Added support of documentation of subroutines and functions
  Added irpf90_indent
  Add tags for vi navigation
  Forgot to remove debug print
  Fixed man error in make
  Corrected bug with unexisting directories
  Added auto codelet generation
  Forgot file
  Added autocompletion in irpman
  Fixed bug with Cython
  Added -I option
  Work to do
  Added man pages
  Bug with +=
  ...

Makefile

@@ -1,10 +1,10 @@
 .PHONY: all src man
 
-all: src man
-
 src:
 	$(MAKE) -C $@
 
 man:
-	$(MAKE) -C $@
+	- $(MAKE) -C $@
+
+all: src man
 

README

@@ -7,7 +7,7 @@ Dependencies
 
 - GNU make (>= 3.81 recommended)
 - Python > 2.3
-- Any Fortran 90 compiler (Intel recommended, for example)
+- Any Fortran 90 compiler (Intel recommended)
 
 Installing IRPF90
 -----------------
@@ -19,7 +19,9 @@ ${IRPF90_HOME} is the location of your irpf90 directory::
   cat << EOF >> ${HOME}/.bash_profile
   export PYTHONPATH=${IRPF90_HOME}/src:${PYTHONPATH}
   export PATH=${IRPF90_HOME}/bin:${PATH}
+  export MANPATH=${IRPF90_HOME}/man:${MANPATH}
   EOF
+  . ${HOME}/.bash_profile
 
 
 Using IRPF90
@@ -42,6 +44,6 @@ Author
 ------
 
 | Anthony Scemama, LCPQ-IRSAMC, CNRS-Universite Paul Sabatier
-| scemama@irsamc.ups-tlse.fr
+| <scemama@irsamc.ups-tlse.fr>
 | http://scemama.mooo.com
 

bin/irpf90

@@ -1 +1 @@
-../src/irpf90.exe
+../src/irpf90_python.exe

bin/irpf90_indent

@@ -0,0 +1,40 @@
+#!/usr/bin/python
+#   IRPF90 is a Fortran90 preprocessor written in Python for programming using
+#   the Implicit Reference to Parameters (IRP) method.
+#   Copyright (C) 2009 Anthony SCEMAMA 
+#
+#   This program is free software; you can redistribute it and/or modify
+#   it under the terms of the GNU General Public License as published by
+#   the Free Software Foundation; either version 2 of the License, or
+#   (at your option) any later version.
+#
+#   This program is distributed in the hope that it will be useful,
+#   but WITHOUT ANY WARRANTY; without even the implied warranty of
+#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#   GNU General Public License for more details.
+#
+#   You should have received a copy of the GNU General Public License along
+#   with this program; if not, write to the Free Software Foundation, Inc.,
+#   51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+#
+#   Anthony Scemama
+#   LCPQ - IRSAMC - CNRS
+#   Universite Paul Sabatier
+#   118, route de Narbonne      
+#   31062 Toulouse Cedex 4      
+#   scemama@irsamc.ups-tlse.fr
+
+
+import os
+import sys
+
+wd = os.path.abspath(os.path.dirname(__file__))
+sys.path.insert(0,(wd+"/../src/"))
+sys.path.insert(0,(wd+"/../share/irpf90/src/"))
+
+def main():
+  import irpf90_indent
+  irpf90_indent.main()
+
+main()
+

bin/irpman

@@ -1,4 +1,4 @@
-#!/usr/bin/python
+#!/bin/bash
 #   IRPF90 is a Fortran90 preprocessor written in Python for programming using
 #   the Implicit Reference to Parameters (IRP) method.
 #   Copyright (C) 2009 Anthony SCEMAMA 
@@ -24,19 +24,25 @@
 #   31062 Toulouse Cedex 4      
 #   scemama@irsamc.ups-tlse.fr
 
+# Define auto-completion for bash
 
-import os
+case "$0" in
-import sys
+  *bash*)
-
+   _irpman_complete()
-wd = os.path.abspath(os.path.dirname(__file__))
+   {
-sys.path.insert(0,(wd+"/../src/"))
+     local cur
-sys.path.insert(0,(wd+"/../share/irpf90/src/"))
+     COMPREPLY=()
-
+     cur=${COMP_WORDS[COMP_CWORD]}
-if len(sys.argv) != 2:
+     COMPREPLY=( $(compgen -W "`cat tags | cut -d' ' -f 1`" -- "$cur" ) )
-  print "Usage:"
+   } && complete -F _irpman_complete irpman
-  print sys.argv[0]+" <irp_variable>"
+   ;;
-  sys.exit(1)
-
-from irpf90_t import mandir
-os.system("man ./"+mandir+sys.argv[1].lower()+".l")
 
+  *)
+   if [[ -z $1 ]] ; then
+       echo "To activate auto-completion in bash:"
+       echo "source " $0
+   else
+     python $(dirname $0)/../src/irpman.py $1
+   fi
+   ;;
+esac

example/Makefile

@@ -1,4 +1,4 @@
-IRPF90 = ~/irpf90/bin/irpf90  -a -d
+IRPF90 = python ../src/irpf90.py -I input -a -d
 FC     = gfortran
 FCFLAGS= -O2
 

example/uvwt.irp.f

@@ -20,6 +20,7 @@ BEGIN_PROVIDER [ integer, u2 ]
   integer :: fu
 ! u2 = fu(d3,d4)
   u2 = d3+d4+1
+  ASSERT (u2 > d3)
 END_PROVIDER
 
 integer function fu(x,y)

packages/Makefile

@@ -1,5 +1,5 @@
 include version
-default:
+default: version
 	set -x
 	NAME=irpf90-$(VERSION)-noarch-src.tar.gz ;\
 	cd ..;\

src/Makefile

@@ -1,13 +1,10 @@
 PYTHON=python
 PYVERSION=$(shell $(PYTHON) -c "import sys; print(sys.version[:3])")
-HAS_CYTHON=$(shell which cython &> /dev/null && echo 1 || echo 0)
+HAS_CYTHON=$(shell bash -c "which cython &> /dev/null && echo 1 || echo 0")
 ifneq ($(HAS_CYTHON),0)
 
-../bin/irpf90: irpf90.exe
+../bin/irpf90: irpf90.so
-	rm ../bin/irpf90 ; cd ../bin ; ln -s ../src/irpf90.exe irpf90
+	rm ../bin/irpf90 ; cd ../bin ; ln -s ../src/irpf90_python.exe irpf90
-
-irpf90.exe: irpf90.so
-	gcc build/*/irpf90.o -L/usr/lib64 -lpython$(PYVERSION) -o irpf90.exe
 
 irpf90.so : $(wildcard *.py) irpf90.c
 	./cython_setup.py build_ext --inplace

src/codelet.py

@@ -0,0 +1,45 @@
+#!/usr/bin/python
+from command_line import command_line
+import irpf90_t
+
+def run():
+  template = """
+program codelet_%(name)s
+  implicit none
+  integer :: i
+  double precision :: ticks_0, ticks_1, cpu_0, cpu_1
+  integer, parameter :: irp_imax = %(NMAX)d
+
+  %(precondition)s
+
+  call provide_%(name)s
+
+  double precision :: irp_rdtsc
+
+  call cpu_time(cpu_0)
+  ticks_0 = irp_rdtsc()
+  do i=1,irp_imax
+    call bld_%(name)s
+  enddo
+  ticks_1 = irp_rdtsc()
+  call cpu_time(cpu_1)
+  print *, '%(name)s'
+  print *, '-----------'
+  print *, 'Cycles:'
+  print *,  (ticks_1-ticks_0)/dble(irp_imax)
+  print *, 'Seconds:'
+  print *,  (cpu_1-cpu_0)/dble(irp_imax)
+end
+
+  """
+
+  name, NMAX, precondition, filename = command_line.codelet
+  if precondition is None:
+    precondition = ""
+  else:
+    precondition = "PROVIDE "+precondition
+  file = open(filename,'w')
+  file.write(template%locals())
+  file.close()
+
+

src/command_line.py

@@ -48,9 +48,12 @@ options['s'] = [ 'substitute'   , 'Substitute values in do loops for generating
 options['r'] = [ 'no_directives', 'Ignore all compiler directives !DEC$ and !DIR$', 0 ]
 options['n'] = [ 'inline'       , 'all|providers|builders : Force inlining of providers or builders', 1 ]
 options['u'] = [ 'unused'       , 'Print unused providers', 0 ]
+options['I'] = [ 'include'      , 'Include directory', 1 ]
+options['c'] = [ 'codelet'      , 'entity:NMAX or entity:precondition:NMAX  : Generate a codelet to profile a provider running NMAX times', 1 ]
 
 class CommandLine(object):
 
+  do_openmp = False
   def __init__(self):
     global options
     self._opts = None
@@ -66,6 +69,19 @@ class CommandLine(object):
     return self._defined
   defined = property(fget=defined)
 
+  def include_dir(self):
+    if '_include_dir' not in self.__dict__:
+      self._include_dir = []
+      for o,a in self.opts:
+        if o in [ "-I", '--'+options['I'][0] ]:
+          if len(a) < 1: 
+            print "Error: -I option needs a directory"
+          if a[-1] != '/':
+            a = a+'/'
+          self._include_dir.append(a)
+    return self._include_dir
+  include_dir = property(fget=include_dir)
+
   def inline(self):
     if '_inline' not in self.__dict__:
       self._inline = ""
@@ -87,6 +103,28 @@ class CommandLine(object):
     return self._substituted
   substituted = property(fget=substituted)
 
+  def codelet(self):
+    if '_codelet' not in self.__dict__:
+      self._codelet = []
+      for o,a in self.opts:
+        if o in [ "-c", '--'+options['c'][0] ]:
+          buffer = a.split(':')
+          filename = 'codelet_'+buffer[0]+'.irp.f'
+          if len(buffer) == 2:
+            self._codelet = [buffer[0], int(buffer[1]), None, filename]
+          elif len(buffer) == 3:
+            self._codelet = [buffer[0], int(buffer[2]), buffer[1], filename]
+          else:
+            print """
+Error in codelet definition. Use:
+--codelet=provider:NMAX
+or
+--codelet=provider:precondition:NMAX
+"""
+            sys.exit(1)
+    return self._codelet
+  codelet = property(fget=codelet)
+
   def preprocessed(self):
     if '_preprocessed' not in self.__dict__:
       self._preprocessed = []

src/create_man.py

@@ -27,6 +27,8 @@
 
 from variable  import Variable
 from variables import variables
+from subroutine  import Sub
+from subroutines import subroutines
 from irpf90_t  import *
 from util import *
 
@@ -93,6 +95,46 @@ def do_print(var):
     process_deps(file,var.needed_by)
   file.close()
 
+######################################################################
+def process_declaration_subroutine(file, sub):
+  print >>file, sub.line.text.split('!')[0].strip()
+
+# for line in sub.text:
+######################################################################
+def do_print_subroutines(sub):
+  assert type(sub) == Sub
+  filename = sub.line.filename
+  name = sub.name
+  file = open("%s%s.l"%(mandir,sub.name), "w")
+  print >>file, '.TH "IRPF90 entities" l %s "IRPF90 entities" %s'%(name,name)
+  print >>file, ".SH Declaration"
+  print >>file, ".nf"
+  process_declaration_subroutine(file,sub)
+  print >>file, ".ni"
+  if sub.doc != []:
+   print >>file, ".SH Description"
+   for l in sub.doc:
+     process_doc(file,l)
+  print >>file, ".SH File\n.P"
+  print >>file, filename
+  if sub.needs != []:
+    sub.needs.sort()
+    print >>file, ".SH Needs"
+    process_deps(file,sub.needs)
+  if sub.called_by != []:
+    sub.called_by.sort()
+    print >>file, ".SH Called by"
+    process_deps(file,sub.called_by)
+  if sub.calls != []:
+    sub.calls.sort()
+    print >>file, ".SH Calls"
+    process_deps(file,sub.calls)
+  if sub.touches != []:
+    sub.touches.sort()
+    print >>file, ".SH Touches"
+    process_deps(file,sub.touches)
+  file.close()
+
 ######################################################################
 def run():
   import parsed_text
@@ -100,14 +142,28 @@ def run():
   if os.fork() == 0:
     for v in variables.values():
       do_print(v)
+    for s in subroutines.values():
+      do_print_subroutines(s)
     sys.exit(0)
 
   if os.fork() == 0:
+    tags = []
     l = variables.keys()
     file = open("irpf90_entities","w")
     l.sort()
     for v in l:
       do_print_short(file,variables[v])
+      line = variables[v].line
+      tags.append( '%s\t%s\t/%s/;"\n'%(v,line.filename[0],line.text.split('!')[0].strip()) )
+    file.close()
+    l = subroutines.keys()
+    for v in l:
+      line = subroutines[v].line
+      tags.append('%s\t%s\t/%s/;"\n'%(v,line.filename,line.text.split('!')[0].strip()))
+    tags.sort()
+    file = open("tags","w")
+    for line in tags:
+      file.write(line)
     file.close()
     sys.exit(0)
 

src/init.py

@@ -30,6 +30,7 @@ import os
 import util
 import makefile
 import irpf90_t
+from command_line import command_line
 
 initialized = False
 
@@ -49,23 +50,36 @@ def init():
     except OSError:
       os.mkdir(dir)
 
+  for dir in command_line.include_dir:
+    dir = irpf90_t.irpdir+dir
+    try:
+      wd = os.getcwd()
+      os.chdir(dir)
+      os.chdir(wd)
+    except OSError:
+      os.mkdir(dir)
+
   # Create makefile
   makefile.create()
   
   # Copy current files in the irpdir
-  for filename in os.listdir(os.getcwd()):
+  for dir in ['./']+command_line.include_dir:
-    if not filename[0].startswith(".") and not os.path.isdir(filename):
+    try:
+      os.stat(dir)
+    except:
+      print dir,'not in dir'
+      continue
+    for filename in os.listdir(dir):
+      filename = dir+filename
+      if not filename.startswith(".") and not os.path.isdir(filename):
         try:
           file  = open(filename,"r")
         except IOError:
           print "Warning : Unable to read file %s."%(filename)
         else:
-        buffer = file.readlines()
-        file.close()
-        if not util.same_file(irpf90_t.irpdir+filename,buffer):
-          file  = open(filename,"r")
           buffer = file.read()
           file.close()
+          if not util.same_file(irpf90_t.irpdir+filename,buffer):
             file = open(irpf90_t.irpdir+filename,"w")
             file.write(buffer)
             file.close()

src/irpf90.py

@@ -35,8 +35,9 @@ except:
   pass
 sys.setcheckinterval(1000)
 
+from command_line import command_line
+
 def main():
-  from command_line import command_line
 
   vim.install()
 
@@ -72,10 +73,15 @@ def main():
         for x in parents:
           print "- %s"%(x,)
 
+  if command_line.do_codelet:
+     import profile
+     profile.build_rdtsc()
+     import codelet
+     codelet.run()
+
   if not command_line.do_run:
      return
 
-
   init()
 
   import irp_stack
@@ -102,3 +108,4 @@ def main():
 
 if __name__ == '__main__':
   main()
+

src/irpf90_indent.py

@@ -0,0 +1,247 @@
+#!/usr/bin/python
+
+import sys
+import re
+
+LENMAX = 70
+tabn = 2
+tab = " "*tabn
+
+class Grep(object):
+
+  re_begin_program = re.compile(r"^\s*program\s",flags=re.I)
+  def begin_program(self,string):
+    return re.match(self.re_begin_program,string) is not None
+
+  re_end_program = re.compile(r"\s*(end\s*!?$|end\s*program)",flags=re.I)
+  def end_program(self,string):
+    return re.match(self.re_end_program,string) is not None
+
+  re_begin_subroutine = re.compile(r"^\s*(recursive)?\s*subroutine\s",flags=re.I)
+  def begin_subroutine(self,string):
+    return re.match(self.re_begin_subroutine,string) is not None
+
+  re_end_subroutine = re.compile(r"\s*(end\s*!?$|end\s*subroutine)",flags=re.I)
+  def end_subroutine(self,string):
+    return re.match(self.re_end_subroutine,string) is not None
+
+  re_begin_function = re.compile(r"^.*function\s+.*\(",flags=re.I)
+  def begin_function(self,string):
+    return re.match(self.re_begin_function,string) is not None
+
+  re_end_function = re.compile(r"\s*(end\s*!?$|end\s*function)",flags=re.I)
+  def end_function(self,string):
+    return re.match(self.re_end_function,string) is not None
+
+  re_begin_provider = re.compile(r"^\s*&?begin_provider\s",flags=re.I)
+  def begin_provider(self,string):
+    return re.match(self.re_begin_provider,string) is not None
+
+  re_end_provider = re.compile(r"^\s*end_provider\s*(!.*)?$", flags=re.I)
+  def end_provider(self,string):
+    return re.match(self.re_end_provider,string) is not None
+
+  re_begin_do = re.compile(r"^\s*do\s+",flags=re.I)
+  def begin_do(self,string):
+    return re.match(self.re_begin_do,string) is not None
+
+  re_end_do = re.compile(r"^\s*end\s*do\s*(!.*)?$",flags=re.I)
+  def end_do(self,string):
+    return re.match(self.re_end_do,string) is not None
+
+  re_begin_if = re.compile(r"^\s*if(\(|\s+).*(&|then)\s*(!.*)?$",flags=re.I)
+  def begin_if(self,string):
+    return re.match(self.re_begin_if,string) is not None
+
+  re_else = re.compile(r"^\s*else",flags=re.I)
+  def xelse(self,string):
+    return re.match(self.re_else,string) is not None
+
+  re_end_if = re.compile(r"^\s*end\s*if\s*(!.*)?$",flags=re.I)
+  def end_if(self,string):
+    return re.match(self.re_end_if,string) is not None
+
+  re_begin_select = re.compile(r"^\s*select\s*case",flags=re.I)
+  def begin_select(self,string):
+    return re.match(self.re_begin_select,string) is not None
+
+  re_case = re.compile(r"^\s*case\s*\(",flags=re.I)
+  def case(self,string):
+    return re.match(self.re_case,string) is not None
+
+  re_end_select = re.compile(r"^\s*end\s*select\s*(!.*)?$",flags=re.I)
+  def end_select(self,string):
+    return re.match(self.re_end_select,string) is not None
+
+  re_continuation = re.compile(r"^\s*\S+.*&")
+  def continuation(self,string):
+    return re.match(self.re_continuation,string) is not None
+
+  re_declaration = re.compile(r"^.*::.*$")
+  def declaration(self,string):
+    return re.match(self.re_declaration,string) is not None
+
+grep = Grep()
+
+class indent(object):
+
+  def __init__(self):
+    """Run the program"""
+    self.run()
+
+  def format_declaration(self,string,n):
+    l,r = string.split('::')
+    return l.strip().ljust(n) + ' :: '+ r.strip()
+
+  def format_continuation(self,string,n):
+    buffer = string.split('&')
+    if len(buffer) == 1:
+      l = buffer[0]
+      return l
+    else:
+      l, r = buffer
+    return l.strip().ljust(69-len(n)) + '&'+ r.strip()
+
+  def get_filename(self):
+    """The file name is the first argument"""
+    if '_filename' not in self.__dict__:
+      try:
+        self._filename = sys.argv[1]
+      except:
+        self._filename = None
+    return self._filename
+  filename=property(fget=get_filename)
+
+  def get_text(self):
+    """The text of the file is a list of lines"""
+    if '_text' not in self.__dict__:
+      if self.filename is not None:
+        f = open(self.filename,'r')
+        self._text = f.read().splitlines()
+        f.close()
+      else:
+        self._text = sys.stdin.read().splitlines()
+    return self._text
+  text=property(fget=get_text)
+
+  def indentlevel(self,line):
+    line = line.rstrip()
+    k=0
+    if len(line) > 0:
+      while line[k] == ' ':
+        k+=1
+    return k
+
+  def run(self):
+    lines = self.text
+    indent0 = " "*self.indentlevel(self.text[0])
+    k = indent0
+    line = ""
+    for i in range(len(self.text)):
+      prevline = line
+      line = self.text[i].strip()
+      if grep.continuation(line):
+        line = self.format_continuation(line,k)
+
+      if grep.continuation(prevline):
+        print k+2*tab+self.format_continuation(line,k+2*tab)
+        continue
+
+      if grep.begin_subroutine(line):
+        print line
+        k = indent0+tab
+        continue
+
+      if grep.begin_function(line):
+        print line
+        k = indent0+tab
+        continue
+
+      if grep.begin_program(line):
+        print line
+        k = indent0+tab
+        continue
+
+      if grep.begin_provider(line):
+        if line[0] != '&':
+          k = indent0+tab
+          if grep.begin_provider(self.text[i+1].strip()):
+            print " "+line
+          else:
+            print line
+        else:
+          print line
+        continue
+
+      if grep.declaration(line):
+        print k+self.format_declaration(line,30)
+        continue
+
+      if grep.begin_do(line):
+        print k+line
+        k += tab
+        continue
+
+      if grep.begin_if(line):
+        print k+line
+        k += tab
+        continue
+
+      if grep.xelse(line):
+        print k[:-tabn]+line
+        continue
+
+      if grep.begin_select(line):
+        print k+line
+        k += 2*tab
+        continue
+
+      if grep.case(line):
+        print k[:-tabn]+line
+        continue
+
+      if grep.end_do(line):
+        k = k[:-tabn]
+        print k+line
+        continue
+
+      if grep.end_if(line):
+        k = k[:-tabn]
+        print k+line
+        continue
+
+      if grep.end_select(line):
+        k = k[:-2*tabn]
+        print k+line
+        continue
+
+      if grep.end_subroutine(line):
+        print line
+        k = indent0
+        continue
+
+      if grep.end_function(line):
+        print line
+        k = indent0
+        continue
+
+      if grep.end_provider(line):
+        print line
+        k = indent0
+        continue
+
+      if grep.end_program(line):
+        print line
+        k = indent0
+        continue
+
+      print k+line
+
+
+def main():
+  indent()
+
+
+if __name__ == '__main__':
+  main()
+

src/irpf90_t.py

@@ -54,286 +54,329 @@ class Line(object):
   lower = property(fget=get_lower)
 
 class Empty_line(Line):
+  str="Empty_line"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Empty_line",self.i,self.text)
 
 class Simple_line(Line):
+  str="Simple_line"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Simple_line",self.i,self.text)
 
 class Declaration(Line):
+  str="Declaration"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Declaration",self.i,self.text)
 
 class Continue(Line):
+  str="Continue"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Continue",self.i,self.text)
 
 class Begin_provider(Line):
-  str = "Provider"
+  str="Begin_provider"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Begin_provider",self.i,self.text)
 
 class Cont_provider(Line):
+  str="Cont_provider"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Cont_provider",self.i,self.text)
 
 class End_provider(Line):
+  str="End_provider"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("End_provider",self.i,self.text)
 
 class Begin_doc(Line):
+  str="Begin_doc"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Begin_doc",self.i,self.text)
 
 class Doc(Line):
+  str="Doc"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Doc",self.i,self.text)
 
 class End_doc(Line):
+  str="End_doc"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("End_doc",self.i,self.text)
 
 class Begin_shell(Line):
+  str="Begin_shell"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Begin_shell",self.i,self.text)
 
 class End_shell(Line):
+  str="End_shell"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("End_shell",self.i,self.text)
 
 class Begin_template(Line):
+  str="Begin_template"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Begin_template",self.i,self.text)
 
 class End_template(Line):
+  str="End_template"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("End_template",self.i,self.text)
 
 class Subst(Line):
+  str="Subst"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Subst",self.i,self.text)
 
 class Assert(Line):
+  str="Assert"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Assert",self.i,self.text)
 
 class Touch(Line):
+  str="Touch"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Touch",self.i,self.text)
 
 class SoftTouch(Touch):
+  str="SoftTouch"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("SoftTouch",self.i,self.text)
 
 class Irp_read(Line):
+  str="Irp_read"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Irp_read",self.i,self.text)
 
 class Irp_write(Line):
+  str="Irp_write"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Irp_write",self.i,self.text)
 
 class Irp_If(Line):
+  str="Irp_If"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Irp_If",self.i,self.text)
 
 class Irp_Else(Line):
+  str="Irp_Else"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Irp_Else",self.i,self.text)
 
 class Irp_Endif(Line):
+  str="Irp_Endif"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Irp_Endif",self.i,self.text)
 
 class Openmp(Line):
+  str="Openmp"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Openmp",self.i,self.text)
 
 class Directive(Line):
+  str="Directive"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Directive",self.i,self.text)
 
 class Use(Line):
+  str="Use"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Use",self.i,self.text)
 
 class Do(Line):
+  str="Do"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Do",self.i,self.text)
 
 class Enddo (Line):
+  str="Enddo"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Enddo",self.i,self.text)
 
 class If(Line):
+  str="If"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("If",self.i,self.text)
 
 class Elseif(Line):
+  str="Elseif"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Elseif",self.i,self.text)
 
 class Else(Line):
+  str="Else"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Else",self.i,self.text)
 
 class Endif(Line):
+  str="Endif"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Endif",self.i,self.text)
 
 class Select(Line):
+  str="Select"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Select",self.i,self.text)
 
 class Case(Line):
+  str="Case"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Case",self.i,self.text)
 
 class End_select(Line):
+  str="End_select"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("End_select",self.i,self.text)
 
 class Program(Line):
-  str = "Program"
+  str="Program"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Program",self.i,self.text)
 
 class Subroutine(Line):
-  str = "Subroutine"
+  str="Subroutine"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Subroutine",self.i,self.text)
 
 class Function(Line):
-  str = "Function"
+  str="Function"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Function",self.i,self.text)
 
 class Call(Line):
+  str="Call"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Call",self.i,self.text)
 
 class Provide(Line):
+  str="Provide"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Provide",self.i,self.text)
 
 class NoDep(Line):
+  str="NoDep"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("NoDep",self.i,self.text)
 
 class Return (Line):
+  str="Return"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Return",self.i,self.text)
 
 class Include(Line):
+  str="Include"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Include",self.i,self.text)
 
 class Implicit (Line):
+  str="Implicit"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Implicit",self.i,self.text)
 
 class Free(Line):
+  str="Free"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("Free",self.i,self.text)
 
 class End(Line):
+  str="End"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
     return "%20s:%5d : %s"%("End",self.i,self.text)
 
 class Provide_all (Line):
+  str="Provide_all"
   def __init__(self,i,text,filename):
     Line.__init__(self,i,text,filename)
   def __repr__(self):
@@ -349,6 +392,14 @@ def create_irpf90_files():
   def is_irpf90_file(filename):
     return filename.endswith(".irp.f") and not filename.startswith('.')
   result = filter ( is_irpf90_file, os.listdir(os.getcwd()) )
+  for dir in command_line.include_dir:
+    try:
+      os.stat(dir)
+      result += map(lambda x: dir+x, filter ( is_irpf90_file, os.listdir(dir) ) )
+    except:
+      continue
+  if command_line.do_codelet:
+    result += [command_line.codelet[3]]
   return result
 irpf90_files = create_irpf90_files()
 

src/irpman.py

@@ -0,0 +1,39 @@
+#!/usr/bin/python
+#   IRPF90 is a Fortran90 preprocessor written in Python for programming using
+#   the Implicit Reference to Parameters (IRP) method.
+#   Copyright (C) 2009 Anthony SCEMAMA 
+#
+#   This program is free software; you can redistribute it and/or modify
+#   it under the terms of the GNU General Public License as published by
+#   the Free Software Foundation; either version 2 of the License, or
+#   (at your option) any later version.
+#
+#   This program is distributed in the hope that it will be useful,
+#   but WITHOUT ANY WARRANTY; without even the implied warranty of
+#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#   GNU General Public License for more details.
+#
+#   You should have received a copy of the GNU General Public License along
+#   with this program; if not, write to the Free Software Foundation, Inc.,
+#   51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+#
+#   Anthony Scemama
+#   LCPQ - IRSAMC - CNRS
+#   Universite Paul Sabatier
+#   118, route de Narbonne      
+#   31062 Toulouse Cedex 4      
+#   scemama@irsamc.ups-tlse.fr
+
+
+import os
+import sys
+
+wd = os.path.abspath(os.path.dirname(__file__))
+from irpf90_t import mandir
+filename = sys.argv[1].lower()+".l"
+if filename not in os.listdir(mandir):
+   print "%s does not exist"%(sys.argv[1])
+   sys.exit(-1)
+
+os.system("man ./"+mandir+sys.argv[1].lower()+".l")
+

src/makefile.py

@@ -32,6 +32,8 @@ irpdir = irpf90_t.irpdir
 mandir = irpf90_t.mandir
 
 FILENAME = "Makefile"
+FILENAME_GITIGNORE = ".gitignore"
+IRPF90_MAKE = "irpf90.make"
 
 ######################################################################
 def create():
@@ -51,45 +53,65 @@ SRC=
 OBJ=
 LIB=
 
-include irpf90.make
+include %s
 
-irpf90.make: $(wildcard *.irp.f)
+%s: $(filter-out %s%%, $(wildcard */*.irp.f)) $(wildcard *.irp.f) $(wildcard *.inc.f) Makefile 
 \t$(IRPF90)
-"""
+"""%(IRPF90_MAKE,IRPF90_MAKE,irpdir)
+  file.write(t)
+  file.close()
+  create_gitignore()
+
+######################################################################
+def create_gitignore():
+  has_makefile = True
+  try:
+    file = open(FILENAME_GITIGNORE,"r")
+  except IOError:
+    has_makefile = False
+  if has_makefile:
+    return
+  file = open(FILENAME_GITIGNORE,"w")
+  t = "\n".join([ irpdir, mandir, IRPF90_MAKE, 'irpf90_entities', 'tags' ])
   file.write(t)
   file.close()
 
 ######################################################################
 def run():
     from modules import modules
-  if os.fork() == 0:
     mod = []
     for m in modules.values():
       mod.append(m)
 
-    file = open('irpf90.make','w')
+    file = open(IRPF90_MAKE,'w')
-
+    result = ""
-    result = "SRC += %sirp_stack.irp.F90"%(irpdir)
+    result += "FC+=-I %s "%(irpdir)
+    for i in command_line.include_dir:
+       result += "-I %s%s "%(irpdir,i)
+    result += "\n"
+    result += "SRC += %sirp_stack.irp.F90"%(irpdir)
     result += " %sirp_touches.irp.F90"%(irpdir)
     if command_line.do_openmp:
       result += " %sirp_locks.irp.F90"%(irpdir)
     if command_line.do_profile:
       result += " %sirp_profile.irp.F90"%(irpdir)
     for m in mod:
-      result += " %s%s.irp.F90"%(irpdir,m.name[:-4])
+      result += " %s%s.irp.F90"%(irpdir,m.filename)
-      result += " %s%s.irp.module.F90"%(irpdir,m.name[:-4])
+      result += " %s%s.irp.module.F90"%(irpdir,m.filename)
     print >>file, result
 
-    result = "OBJ += %sirp_stack.irp.o"%(irpdir)
+    result = "OBJ_IRP = "
     for m in mod:
       if not m.is_main:
-        result += " %s%s.irp.o"%(irpdir,m.name[:-4])
+        result += " %s%s.irp.o"%(irpdir,m.filename)
-        result += " %s%s.irp.module.o"%(irpdir,m.name[:-4])
+        result += " %s%s.irp.module.o"%(irpdir,m.filename)
     print >>file, result
 
-    print >>file, "OBJ1 = $(patsubst %%, %s%%,$(notdir $(OBJ))) %sirp_touches.irp.o"%(irpdir,irpdir),
+    print >>file, "OBJ1 = $(OBJ_IRP) $(OBJ) %sirp_touches.irp.o"%(irpdir),
     if command_line.do_profile:
       print >>file, " %sirp_profile.irp.o"%(irpdir), " irp_rdtsc.o",
+    if command_line.do_codelet:
+      print >>file, " irp_rdtsc.o",
     if command_line.do_openmp:
       print >>file, " %sirp_locks.irp.o"%(irpdir),
     else:
@@ -106,14 +128,14 @@ def run():
     print >>file, "ifdef USE_IRPF90_A"
     for m in mod:
       if m.is_main:
-        exe = m.name[:-4]
+        exe = m.filename
         print >>file, "%s: %s%s.irp.o %s%s.irp.module.o irpf90.a"%(exe,irpdir,exe,irpdir,exe)
         print >>file, "\t$(FC) -o $@ %s$@.irp.o %s$@.irp.module.o irpf90.a $(LIB)"%(irpdir,irpdir)
         print >>file, "\t@$(MAKE) -s move"
     print >>file, "else"
     for m in mod:
       if m.is_main:
-        exe = m.name[:-4]
+        exe = m.filename
         print >>file, "%s: %s%s.irp.o %s%s.irp.module.o $(OBJ1)"%(exe,irpdir,exe,irpdir,exe)
         print >>file, "\t$(FC) -o $@ %s$@.irp.o %s$@.irp.module.o $(OBJ1) $(LIB)"%(irpdir,irpdir)
         print >>file, "\t@$(MAKE) -s move"
@@ -121,14 +143,16 @@ def run():
 
     buffer = ""
     for m in mod:
-      filename = "%s%s.irp.o: %s%s.irp.module.o"%(irpdir,m.name[:-4],irpdir,m.name[:-4])
+      filename = "%s%s.irp.o: $(OBJ) %s%s.irp.module.o"%(irpdir,m.filename,irpdir,m.filename)
-      mds = map (lambda x: " %s%s.irp.module.o"%(irpdir,x[:-4]),m.needed_modules)
+      needed_modules = filter( lambda x: modules[x].name in m.needed_modules, modules )
+      needed_files = map(lambda x: modules[x].filename, needed_modules)
+      mds = map (lambda x: " %s%s.irp.module.o"%(irpdir,x),needed_files)
       print >>file, filename," ".join(mds)," ".join(m.includes)
       if not m.is_main:
         buffer += "\t - @echo '"+filename+" ".join(mds)+"' >> %sdist_Makefile\n"%(irpdir)
-    print >>file, "%sirp_touches.irp.o:"%(irpdir),
+    print >>file, "%sirp_touches.irp.o: $(OBJ) "%(irpdir),
     mds = filter(lambda x: not x.is_main,mod)
-    mds = map(lambda x: " %s%s.irp.o %s%s.irp.o"%(irpdir,x.name[:-4],irpdir,x.name[:-4]),mds)
+    mds = map(lambda x: " %s%s.irp.o %s%s.irp.o"%(irpdir,x.filename,irpdir,x.filename),mds)
     print >>file," ".join(mds)
     if command_line.do_profile:
       print >>file, "%sirp_profile.irp.o:"%(irpdir),
@@ -143,14 +167,14 @@ def run():
 #   print >>file, "\t- @echo FCFLAGS=$(FCFLAGS) >> %sdist_Makefile"%(irpdir)
 #   print >>file, "\t- @echo LIB=$(LIB) >> %sdist_Makefile"%(irpdir)
 #   print >>file, "\t- @echo .DEFAULT_GOAL: exe >> %sdist_Makefile"%(irpdir)
-#   print >>file, "\t- @echo 'exe: $$(EXE).irp.F90 $(OBJ) irp_touches.irp.o'  >> %sdist_Makefile"%(irpdir)
+#   print >>file, "\t- @echo 'exe: $$(EXE).irp.F90 $(OBJ_IRP) $(OBJ) irp_touches.irp.o'  >> %sdist_Makefile"%(irpdir)
-#   print >>file, "\t- @echo '\t$$(FC) -o $$(EXE) $$(EXE).irp.F90 $(OBJ) irp_touches.irp.o $$(LIB)' >> %sdist_Makefile"%(irpdir)
+#   print >>file, "\t- @echo '\t$$(FC) -o $$(EXE) $$(EXE).irp.F90 $(OBJ_IRP) $(OBJ) irp_touches.irp.o $$(LIB)' >> %sdist_Makefile"%(irpdir)
 #   print >>file, "\t- @echo '%%.o: %%.F90'  >> %sdist_Makefile"%(irpdir)
 #   print >>file, "\t- @echo '\t$$(FC) $$(FCFLAGS) -c $$*.F90 -o $$*.o' >> %sdist_Makefile"%(irpdir)
 #   print >>file, "\t- @echo 'clean:' >> %sdist_Makefile"%(irpdir)
 #   print >>file, "\t- @echo '\trm *.o *.mod $$(EXE) 2>/dev/null' >> %sdist_Makefile"%(irpdir)
 #   print >>file, buffer
-#   print >>file, "\t- @echo '\tirp_touches.irp.o: irp_touches.irp.F90 $(OBJ) >> %sdist_Makefile"%(irpdir)
+#   print >>file, "\t- @echo '\tirp_touches.irp.o: irp_touches.irp.F90 $(OBJ_IRP) $(OBJ) >> %sdist_Makefile"%(irpdir)
 
 #   print >>file, "%%.dist: %sdist_Makefile"%(irpdir)
 #   print >>file, "\t- @mkdir -p dist/$*| DO_NOTHING="
@@ -165,23 +189,23 @@ def run():
 #   print >>file, "\t- @cp %s$*.irp.F90 dist/$*/| DO_NOTHING="%(irpdir)
 #   print >>file, "\t- cd dist ; tar -zcvf ../$*.tar.gz $*\n"
 
-    print >>file, irpdir+"%.irp.module.o: "+irpdir+"%.irp.module.F90"
+    for dir in [ irpdir ] + map(lambda x: irpdir+x, command_line.include_dir):
-    print >>file, "\t$(FC) $(FCFLAGS) -c "+irpdir+"$*.irp.module.F90 -o "+irpdir+"$*.irp.module.o"
+      print >>file, dir+"%.irp.module.o: $(OBJ) "+dir+"%.irp.module.F90"
-    print >>file, irpdir+"%.irp.o: "+irpdir+"%.irp.module.o "+irpdir+"%.irp.F90"
+      print >>file, "\t$(FC) $(FCFLAGS) -c "+dir+"$*.irp.module.F90 -o "+dir+"$*.irp.module.o"
-    print >>file, "\t$(FC) $(FCFLAGS) -c "+irpdir+"$*.irp.F90 -o "+irpdir+"$*.irp.o"
+      print >>file, dir+"%.irp.o: $(OBJ) "+dir+"%.irp.module.o "+dir+"%.irp.F90"
-    print >>file, irpdir+"%.irp.o: "+irpdir+"%.irp.F90"
+      print >>file, "\t$(FC) $(FCFLAGS) -c "+dir+"$*.irp.F90 -o "+dir+"$*.irp.o"
-    print >>file, "\t$(FC) $(FCFLAGS) -c "+irpdir+"$*.irp.F90 -o "+irpdir+"$*.irp.o"
+      print >>file, dir+"%.irp.o: $(OBJ) "+dir+"%.irp.F90"
-    print >>file, irpdir+"%.o: %.F90"
+      print >>file, "\t$(FC) $(FCFLAGS) -c "+dir+"$*.irp.F90 -o "+dir+"$*.irp.o"
-    print >>file, "\t$(FC) $(FCFLAGS) -c $*.F90 -o "+irpdir+"$*.o"
+      print >>file, dir+"%.o: %.F90"
-    print >>file, irpdir+"%.o: %.f90\n\t$(FC) $(FCFLAGS) -c $*.f90 -o "+irpdir+"$*.o"
+      print >>file, "\t$(FC) $(FCFLAGS) -c $*.F90 -o "+dir+"$*.o"
-    print >>file, irpdir+"%.o: %.f\n\t$(FC) $(FCFLAGS) -c $*.f -o "+irpdir+"$*.o"
+      print >>file, dir+"%.o: %.f90\n\t$(FC) $(FCFLAGS) -c $*.f90 -o "+dir+"$*.o"
-    print >>file, irpdir+"%.o: %.F\n\t$(FC) $(FCFLAGS) -c $*.F -o "+irpdir+"$*.o"
+      print >>file, dir+"%.o: %.f\n\t$(FC) $(FCFLAGS) -c $*.f -o "+dir+"$*.o"
-    print >>file, irpdir+"%.irp.F90: irpf90.make\n"
+      print >>file, dir+"%.o: %.F\n\t$(FC) $(FCFLAGS) -c $*.F -o "+dir+"$*.o"
+      print >>file, dir+"%.irp.F90: "+IRPF90_MAKE+"\n"
     print >>file, "move:\n\t@mv -f *.mod IRPF90_temp/ 2> /dev/null | DO_NOTHING=\n"
-    print >>file, "irpf90.a: $(OBJ1)\n\t$(AR) crf irpf90.a $(OBJ1)\n"
+    print >>file, "irpf90.a: $(OBJ) $(OBJ1)\n\t$(AR) crf irpf90.a $(OBJ1)\n"
     print >>file, "clean:\n\trm -rf $(EXE) $(OBJ1) irpf90.a $(ALL_OBJ1) $(ALL)\n"
     print >>file, "veryclean:\n\t- $(MAKE) clean\n"
-    print >>file, "\t- rm -rf "+irpdir+" "+mandir+" irpf90.make irpf90_variables dist\n"
+    print >>file, "\t- rm -rf "+irpdir+" "+mandir+" "+IRPF90_MAKE+" irpf90_entities dist\n"
 
     file.close()
-    sys.exit(0)

src/module.py

@@ -46,7 +46,8 @@ class Fmodule(object):
 
   def __init__(self,text,filename):
     self.text = put_info(text,filename)
-    self.name = "%s_mod"%(filename[:-6])
+    self.filename = filename[:-6]
+    self.name = "%s_mod"%(self.filename).replace('/','__').replace('.','Dot')
 
   def is_main(self):
     if '_is_main' not in self.__dict__:

src/modules.py

@@ -42,7 +42,7 @@ modules = create_modules()
 ######################################################################
 def write_module(m):
   # Module data
-  filename = irpdir+m.name[0:-4]+".irp.module.F90"
+  filename = irpdir+m.filename+".irp.module.F90"
   text = m.header + m.head 
   text = map(lambda x: "%s\n"%(x),text)
   if not same_file(filename,text):
@@ -52,7 +52,7 @@ def write_module(m):
     file.close()
 
   # Subroutines
-  filename = irpdir+m.name[0:-4]+".irp.F90"
+  filename = irpdir+m.filename+".irp.F90"
   text = m.header + m.generated_text + m.residual_text
   text = map(lambda x: "%s\n"%(x),text)
   if not same_file(filename,text):

src/preprocessed_text.py

@@ -355,23 +355,14 @@ def add_operators(text):
   for line in text:
     buffer = line.text
     if "+=" in buffer:
-        if "if" in buffer:
+        if buffer.lstrip().startswith("if "):
             re_incr = re.compile(r"(.*)(\))(\s*)(.*)(\+=)(.*$)",re.S)
             line.text = re.sub(re_incr,r'\1\2\4=\4+(\6)', buffer)
         else:
             line.text = re.sub(re_incr,r'\1\2=\2+(\4)', buffer)
     elif "-=" in buffer:
-        if "if" in buffer:
-            re_decr = re.compile(r"(.*)(\))(\s*)(.*)(\-=)(.*$)",re.S)
-            line.text = re.sub(re_decr,r'\1\2\4=\4-(\6)', buffer)
-        else:
       line.text = re.sub(re_decr,r'\1\2=\2-(\4)', buffer)
-#     line.text = re.sub(re_decr,r'\1\2=\2-(\4)', buffer)
     elif "*=" in buffer:
-        if "if" in buffer:
-            re_mult = re.compile(r"(.*)(\))(\s*)(.*)(\*=)(.*$)",re.S)
-            line.text = re.sub(re_mult,r'\1\2\4=\4*(\6)', buffer)
-        else:
       line.text = re.sub(re_mult,r'\1\2=\2*(\4)', buffer)
     result.append(line)
   return result
@@ -673,7 +664,11 @@ def change_includes(text):
      if len(txt) != 3:
        print txt
        error.fail(line,"Error in include statement")
+     directory = (("./"+line.filename).rsplit('/',1)[0]+'/')[2:]
+     if directory == "":
         filename = txt[1].strip()
+     else:
+        filename = directory+txt[1].strip()
      try:
        file = open(filename,'r')
        file.close()
@@ -793,6 +788,7 @@ def check_begin_end(text):
     error.fail(text[begin],"Missing 'end%s'"%(x,))
 
   def find_matching_end_subfunpro(begin,x):
+    line = text[begin]
     for i in range(begin+1,len(text)):
       line = text[i]
       if type(line) == x:

src/profile.py

@@ -20,7 +20,6 @@ import subprocess
 import tempfile
 import os
 import threading
-from variables import variables
 
 def build_rdtsc():
   file,filename = tempfile.mkstemp()
@@ -36,6 +35,7 @@ def build_rdtsc():
   threading.Thread(target=t).start()
 
 def build_module():
+  from variables import variables
   data = """
 module irp_timer
  double precision :: irp_profile(3,%(n)d) 

src/subroutine.py

@@ -37,6 +37,7 @@ class Sub(object):
     assert len(text) > 0
     assert type(text[0]) in [Subroutine, Function]
     self.text = text
+    self.called_by = []
 
   ############################################################
   def name(self):
@@ -58,7 +59,7 @@ class Sub(object):
     if '_doc' not in self.__dict__:
       def f(l): return 
       buffer = filter(lambda l:type(l) == Doc, self.text)
-      self._doc = map(lambda l: l.text[1:], buffer)
+      self._doc = map(lambda l: l.text.lstrip()[1:], buffer)
       if buffer == []:
         error.warn(None,"Subroutine %s is not documented"%(self.name))
     return self._doc
@@ -114,7 +115,7 @@ class Sub(object):
       buffer = filter(lambda x: type(x) == Call,self.text)
       self._calls = []
       for line in buffer:
-        sub = line.text.split('(',1)[0].split()[1]
+        sub = line.text.split('(',1)[0].split()[1].lower()
         self._calls.append(sub)
       self._calls = make_single(self._calls)
     return self._calls

src/subroutines.py

@@ -25,7 +25,10 @@
 #   scemama@irsamc.ups-tlse.fr
 
 
+from util import *
 from subroutine import *
+from variables import variables
+from variable  import Variable
 from irpf90_t import *
 
 def create_subroutines():
@@ -47,7 +50,22 @@ def create_subroutines():
         inside = False
   return result
 
+def create_called_by(subs,vars):
+  for s in subs.values() + vars.values():
+    if type(s) == Variable and s.same_as != s.name:
+        continue
+    for x in s.calls:
+      try:
+        subs[x].called_by.append(s.name)
+      except KeyError:
+        pass
+
+  for s in subs.values():
+    s.called_by = make_single(s.called_by)
+    s.called_by.sort()
+    
 subroutines = create_subroutines()
+create_called_by(subroutines,variables)
 
 if __name__ == '__main__':
   for v in subroutines.keys():

src/util.py

@@ -35,7 +35,10 @@ def lower(x):
 
 def same_file(filename,txt):
   assert isinstance(filename,str)
-  assert type(txt) == list
+  if (type(txt) == list):
+    buffer = ''.join(txt)
+  else:
+    buffer = txt
 
   try:
     file = open(filename,"r")
@@ -44,8 +47,6 @@ def same_file(filename,txt):
   stream = file.read()
   file.close()
 
-  buffer = ''.join(txt)
- 
   if len(stream) != len(buffer):
     return False
   if stream != buffer:

src/variable.py

@@ -106,7 +106,7 @@ class Variable(object):
     if '_doc' not in self.__dict__:
       text = self.text
       buffer = filter(lambda l:type(l) == Doc, text)
-      self._doc = map(lambda l: l.text[1:], buffer)
+      self._doc = map(lambda l: l.text.lstrip()[1:], buffer)
       if buffer == []:
         error.warn(None,"Variable %s is not documented"%(self.name))
     return self._doc
@@ -130,6 +130,18 @@ class Variable(object):
     return self._includes
   includes = property(includes)
 
+  ############################################################
+  def calls(self):
+    if '_calls' not in self.__dict__:
+      self._calls = []
+      text = self.text
+      for line in filter(lambda x: type(x) == Call,text):
+        sub = line.text.split('(',1)[0].split()[1].lower()
+        self._calls.append(sub)
+      make_single(self._calls)
+    return self._calls
+  calls=property(fget=calls)
+
   ############################################################
   def others(self):
     if '_others' not in self.__dict__:
@@ -200,7 +212,7 @@ class Variable(object):
   ############################################################
   def fmodule(self):
     if '_fmodule' not in self.__dict__:
-      self._fmodule = self.line.filename[0].split('.irp.f')[0]+'_mod'
+      self._fmodule = self.line.filename[0].replace('/','__').split('.irp.f')[0]+'_mod'
     return self._fmodule
   fmodule = property(fmodule)
 

src/version.py

@@ -1 +1 @@
-version = "1.2.20"
+version = "1.3.6"