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Merge pull request #2 from scemama/master

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Merge version 1.6
This commit is contained in:
Anthony Scemama 2015-04-10 19:19:25 +02:00
commit 7a0ede7e87
12 changed files with 188 additions and 86 deletions
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2
Makefile
View File

@ -4,7 +4,7 @@ src:
$(MAKE) -C $@
man:
- $(MAKE) -C $@
- $(MAKE) -C $@ &> /dev/null
all: src man

73
src/checkpoint.py Normal file
View File

@ -0,0 +1,73 @@
#!/usr/bin/env python
# IRPF90 is a Fortran90 preprocessor written in Python for programming using
# the Implicit Reference to Parameters (IRP) method.
# Copyright (C) 2009 Anthony SCEMAMA
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#
# Anthony Scemama
# LCPQ - IRSAMC - CNRS
# Universite Paul Sabatier
# 118, route de Narbonne
# 31062 Toulouse Cedex 4
# scemama@irsamc.ups-tlse.fr
from irpf90_t import *
from util import *
from variables import variables
from modules import modules
CHECKPOINT_UNIT_NUMBER=63
FILENAME=irpdir+'irp_checkpoint.irp.F90'
def create():
out_write = [ "subroutine irp_checkpoint_write" ]
l = variables.keys()
l.sort
main_modules = filter(lambda x: modules[x].is_main, modules)
for m in filter(lambda x: not modules[x].is_main, modules):
out_write += [ " use %s"%(modules[m].name) ]
out_write += [ " implicit none" ]
out_write += [ " integer, parameter :: iunit = %d"%(CHECKPOINT_UNIT_NUMBER) ]
out_write += [ " open(unit=%d,file='irp_checkpoint.dat',status='UNKNOWN',action='WRITE')"%(CHECKPOINT_UNIT_NUMBER) ]
for v in l:
var = variables[v]
if var.is_main:
out_write += [ " if (%s_is_built) then"%(v) ]
for w in [v]+var.others:
d = variables[w].dim
if d == []:
out_write += [ " write(iunit,*) '%s', 0"%(w) ]
else:
out_write += [ " write(iunit, *) '%s', %d"%(w, len(d)),
" write(iunit, *) %s"%(",".join(
[ "size(%s,%d)"%(w,i+1) for i in range(len(d)) ] ))
]
out_write += [ " write(iunit,*) %s"%(w) ]
out_write += [ " endif" ]
out_write += [ " close(%d)"%(CHECKPOINT_UNIT_NUMBER) ]
out_write += [ "end" ]
out = '\n'.join(out_write)
if not same_file(FILENAME,out):
file = open(FILENAME,'w')
file.writelines(out)
file.close()
if __name__ == '__main__':
create()

1
src/command_line.py
View File

@ -256,6 +256,7 @@ def print_options():
description = p1.communicate(description)[0]
description = description.replace('\n','\n'.ljust(27))
print ("-%s, --%s"%(k,options[k][0])).ljust(25), description+'\n'
print "\n"
if __name__ == '__main__':
print_options()

2
src/cython_setup.py
View File

@ -29,7 +29,7 @@ from distutils.extension import Extension
from Cython.Distutils import build_ext
import os
to_remove = """cython_setup.py command_line.py""".split()
to_remove = """cython_setup.py version.py command_line.py""".split()
ext_modules = []
files = os.listdir('.')

133
src/irp_stack.py
View File

@ -31,6 +31,7 @@ from command_line import command_line
do_assert = command_line.do_assert
do_debug = command_line.do_debug
do_openmp = command_line.do_openmp
do_memory = command_line.do_memory
import irpf90_t
@ -53,34 +54,45 @@ subroutine irp_enter(irp_where)
use irp_stack_mod
integer :: ithread
character*(*) :: irp_where
!$ integer, external :: omp_get_thread_num
!$ integer, external :: omp_get_num_threads
ithread = 0
!$ ithread = omp_get_thread_num()
$1
"""
if not command_line.do_openmp:
if do_openmp:
txt += """
integer, external :: omp_get_thread_num
integer, external :: omp_get_num_threads
ithread = omp_get_thread_num()
if (ithread /= 0) then
print *, 'Error: Provider is called by thread', ithread
call irp_trace
stop 1
endif
"""
else:
txt += """
ithread = 0
"""
if command_line.do_memory:
txt+="""
txt += "$1"
if do_memory:
txt+="""
if (.not.alloc) then
nthread = 1
"""
if do_openmp:
txt += """
!$OMP PARALLEL
!$OMP SINGLE
!$ nthread = omp_get_num_threads()
nthread = omp_get_num_threads()
!$OMP END SINGLE
!$OMP END PARALLEL
print *, 'Allocating irp_stack(',STACKMAX,',',nthread,')'
print *, 'Allocating irp_cpu(',STACKMAX,',',nthread,')'
print *, 'Allocating stack_index(',nthread,')'
"""
else:
txt += """
nthread = 1
"""
txt += """
print *, 'Allocating irp_stack(',STACKMAX,',',nthread,')'
print *, 'Allocating irp_cpu(',STACKMAX,',',nthread,')'
print *, 'Allocating stack_index(',nthread,')'
endif"""
txt +="""
$2
@ -90,25 +102,41 @@ subroutine irp_enter_f(irp_where)
use irp_stack_mod
integer :: ithread
character*(*) :: irp_where
!$ integer, external :: omp_get_thread_num
!$ integer, external :: omp_get_num_threads
ithread = 0
!$ ithread = omp_get_thread_num()
"""
if do_openmp:
txt += """
integer, external :: omp_get_thread_num
integer, external :: omp_get_num_threads
ithread = omp_get_thread_num()
"""
else:
txt += """
ithread = 0
"""
txt += """
$1
"""
if command_line.do_memory:
txt+="""
if do_memory:
txt+="""
if (.not.alloc) then
"""
if do_openmp:
txt += """
!$OMP PARALLEL
!$OMP SINGLE
!$ nthread = omp_get_num_threads()
nthread = omp_get_num_threads()
!$OMP END SINGLE
!$OMP END PARALLEL
"""
else:
txt += """
nthread = 1
"""
txt +="""
print *, 'Allocating irp_stack(',STACKMAX,',',nthread,')'
print *, 'Allocating irp_cpu(',STACKMAX,',',nthread,')'
print *, 'Allocating stack_index(',nthread,')'
!$OMP END SINGLE
!$OMP END PARALLEL
endif"""
txt +="""
endif
$2
end subroutine
@ -117,9 +145,17 @@ subroutine irp_leave (irp_where)
character*(*) :: irp_where
integer :: ithread
double precision :: cpu
!$ integer, external :: omp_get_thread_num
"""
if do_openmp:
txt += """
integer, external :: omp_get_thread_num
ithread = omp_get_thread_num()
"""
else:
txt += """
ithread = 0
!$ ithread = omp_get_thread_num()
"""
txt += """
$3
$4
end subroutine
@ -127,32 +163,49 @@ end subroutine
# $1
if do_assert or do_debug:
txt = txt.replace("$1","""
s = """
if (.not.alloc) then
"""
if do_openmp:
s += """
!$OMP PARALLEL
!$OMP SINGLE
!$ nthread = omp_get_num_threads()
nthread = omp_get_num_threads()
!$OMP END SINGLE
!$OMP END PARALLEL
!$OMP CRITICAL
if (.not.alloc) then
allocate(irp_stack(0:STACKMAX,nthread+1))
allocate(irp_cpu(0:STACKMAX,nthread+1))
allocate(stack_index(nthread+1))
allocate(irp_stack(0:STACKMAX,nthread))
allocate(irp_cpu(0:STACKMAX,nthread))
allocate(stack_index(nthread))
stack_index = 0
alloc = .True.
endif
!$OMP END CRITICAL
endif
stack_index(ithread+1) = mod(stack_index(ithread+1)+1,STACKMAX)
irp_stack(stack_index(ithread+1),ithread+1) = irp_where""")
if command_line.do_memory:
irp_stack(stack_index(ithread+1),ithread+1) = irp_where"""
else:
s += """
nthread = 1
if (.not.alloc) then
allocate(irp_stack(0:STACKMAX,1))
allocate(irp_cpu(0:STACKMAX,1))
allocate(stack_index(2))
stack_index = 0
alloc = .True.
endif
endif
stack_index(1) = mod(stack_index(1)+1,STACKMAX)
irp_stack(stack_index(1),1) = irp_where"""
if do_memory:
txt+="""
print *, 'Allocating irp_stack(',STACKMAX,','nthread,')'
print *, 'Allocating irp_cpu(',STACKMAX,','nthread,')'
print *, 'Allocating stack_index(',nthread,')'"""
else:
txt = txt.replace("$1","")
s = ""
txt = txt.replace("$1",s)
# $2
if do_debug:
@ -184,9 +237,17 @@ subroutine irp_trace
use irp_stack_mod
integer :: ithread
integer :: i
"""
if do_openmp:
txt += """
!$ integer, external :: omp_get_thread_num
ithread = 0
!$ ithread = omp_get_thread_num()
"""
else:
txt += """
ithread = 0
"""
txt += """
if (.not.alloc) return
print *, 'Stack trace: ', ithread
print *, '-------------------------'

3
src/irpf90.py
View File

@ -100,6 +100,9 @@ def main():
import touches
touches.create()
import checkpoint
checkpoint.create()
import create_man
create_man.run()

32
src/makefile.py
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@ -91,6 +91,7 @@ def run():
result += "\n"
result += "SRC += %sirp_stack.irp.F90"%(irpdir)
result += " %sirp_touches.irp.F90"%(irpdir)
result += " %sirp_checkpoint.irp.F90"%(irpdir)
if command_line.do_openmp:
result += " %sirp_locks.irp.F90"%(irpdir)
if command_line.do_profile:
@ -107,7 +108,7 @@ def run():
result += " %s%s.irp.module.o"%(irpdir,m.filename)
print >>file, result
print >>file, "OBJ1 = $(OBJ_IRP) $(OBJ) %sirp_touches.irp.o"%(irpdir),
print >>file, "OBJ1 = $(OBJ_IRP) $(OBJ) %sirp_touches.irp.o %sirp_checkpoint.irp.o"%(irpdir,irpdir),
if command_line.do_profile:
print >>file, " %sirp_profile.irp.o"%(irpdir), " irp_rdtsc.o",
if command_line.do_codelet:
@ -150,7 +151,7 @@ def run():
print >>file, filename," ".join(mds)," ".join(m.includes)
if not m.is_main:
buffer += "\t - @echo '"+filename+" ".join(mds)+"' >> %sdist_Makefile\n"%(irpdir)
print >>file, "%sirp_touches.irp.o: $(OBJ) "%(irpdir),
print >>file, "%sirp_touches.irp.o %sirp_checkpoint.irp.o: $(OBJ) "%(irpdir,irpdir),
mds = filter(lambda x: not x.is_main,mod)
mds = map(lambda x: " %s%s.irp.o %s%s.irp.o"%(irpdir,x.filename,irpdir,x.filename),mds)
print >>file," ".join(mds)
@ -162,33 +163,6 @@ def run():
print >>file," ".join(mds)
# print >>file, "%sdist_Makefile:"%(irpdir)
# print >>file, "\t- @echo FC=$(FC) > %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo FCFLAGS=$(FCFLAGS) >> %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo LIB=$(LIB) >> %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo .DEFAULT_GOAL: exe >> %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo 'exe: $$(EXE).irp.F90 $(OBJ_IRP) $(OBJ) irp_touches.irp.o' >> %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo '\t$$(FC) -o $$(EXE) $$(EXE).irp.F90 $(OBJ_IRP) $(OBJ) irp_touches.irp.o $$(LIB)' >> %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo '%%.o: %%.F90' >> %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo '\t$$(FC) $$(FCFLAGS) -c $$*.F90 -o $$*.o' >> %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo 'clean:' >> %sdist_Makefile"%(irpdir)
# print >>file, "\t- @echo '\trm *.o *.mod $$(EXE) 2>/dev/null' >> %sdist_Makefile"%(irpdir)
# print >>file, buffer
# print >>file, "\t- @echo '\tirp_touches.irp.o: irp_touches.irp.F90 $(OBJ_IRP) $(OBJ) >> %sdist_Makefile"%(irpdir)
# print >>file, "%%.dist: %sdist_Makefile"%(irpdir)
# print >>file, "\t- @mkdir -p dist/$*| DO_NOTHING="
# print >>file, "\t- @cp %s* dist/$*/| DO_NOTHING="%(irpdir)
# print >>file, "\t- @for i in $(ALL) $(OBJ) irp_touches.irp.o $(ALL_OBJ); do rm dist/$*/$$i ; done| DO_NOTHING="
# print >>file, "\t- @for i in $(ALL) ; do rm dist/$*/$$i.irp.F90 ; done| DO_NOTHING="
# print >>file, "\t- @rm dist/$*/{*.irp.f,*.mod,irpf90_entities}| DO_NOTHING="
# print >>file, "\t- @rm dist/$*/*.mod 2>/dev/null| DO_NOTHING="
# print >>file, "\t- @echo 'EXE = $*' > dist/$*/Makefile| DO_NOTHING="
# print >>file, "\t- @cat dist/$*/dist_Makefile >> dist/$*/Makefile| DO_NOTHING="
# print >>file, "\t- @rm dist/$*/dist_Makefile| DO_NOTHING="
# print >>file, "\t- @cp %s$*.irp.F90 dist/$*/| DO_NOTHING="%(irpdir)
# print >>file, "\t- cd dist ; tar -zcvf ../$*.tar.gz $*\n"
for dir in [ irpdir ] + map(lambda x: irpdir+x, command_line.include_dir):
print >>file, dir+"%.irp.module.o: $(OBJ) "+dir+"%.irp.module.F90"
print >>file, "\t$(FC) $(FCFLAGS) -c "+dir+"$*.irp.module.F90 -o "+dir+"$*.irp.module.o"

2
src/preprocessed_text.py
View File

@ -522,6 +522,8 @@ def irp_simple_statements(text):
def process_assert(line):
assert type(line) == Assert
if command_line.do_assert:
if '(' not in line.text or ')' not in line.text:
error.fail(line,"Syntax error in ASSERT statement (parentheses)")
condition = "(%s"%(line.text.split('(',1)[1])
if condition == "":
error.fail(line,"Error in Assert statement")

4
src/profile.py
View File

@ -136,8 +136,8 @@ subroutine irp_print_timer()
call profile_sort()
print '(A24,A8,A17,A20,A13,A20)', '', 'N.Calls', 'Tot Cycles', 'Avg Cycles', &
'Tot Secs', 'Avg Secs'
print '(A)', '----------------------------------------------'// &
'----------------------------------------------'
print '(A)', '---------------------------------------------------'// &
'---------------------------------------------------'
do ii=1,%(n)d
i = irp_order(ii)
if (irp_profile(3,i) > 0.) then

4
src/util.py
View File

@ -110,9 +110,9 @@ def dimsize(x):
if b0.replace('-','').isdigit():
size = "%s - (%d)"%(b1,int(b0)-1)
elif b1.replace('-','').isdigit():
size = "%d - %s"%(int(b1)+1,b0)
size = "%d - (%s)"%(int(b1)+1,b0)
else:
size = "%s - %s + 1"%(b1,b0)
size = "%s - (%s) + 1"%(b1,b0)
return size
def put_info(text,filename):

16
src/variable.py
View File

@ -464,17 +464,6 @@ class Variable(object):
name = self.name
same_as = self.same_as
def check_openmp():
if not command_line.do_openmp:
result = [ "!$ nthreads = omp_get_num_threads()" ,
"!$ if (nthreads > 1) then" ,
"!$ print *, irp_here//': Error: Provider in an openMP section'" ,
"!$ stop 1",
"!$ endif" ]
else:
result = []
return result
def build_alloc(name):
self = variables[name]
if self.dim == []:
@ -547,7 +536,8 @@ class Variable(object):
result += [ "!DEC$ ATTRIBUTES FORCEINLINE :: provide_%s"%(name) ]
result += [ "subroutine provide_%s"%(name) ]
result += build_use( [same_as]+self.to_provide )
result += ["!$ use omp_lib"]
if command_line.do_openmp:
result += [" use omp_lib"]
result.append(" implicit none")
length = len("provide_%s"%(name))
result += [\
@ -557,8 +547,6 @@ class Variable(object):
"!$ integer :: nthreads"]
if command_line.do_openmp:
result.append(" call irp_lock_%s(.True.)"%(same_as))
else:
result += check_openmp()
if command_line.do_assert or command_line.do_debug:
result.append(" call irp_enter(irp_here)")
result += call_provides(self.to_provide)

2
src/version.py
View File

@ -1 +1 @@
version = "1.5.0"
version = "1.6.0"