mirror of
https://github.com/triqs/dft_tools
synced 2024-08-17 09:41:43 +02:00
![Alexander Hampel](/assets/img/avatar_default.png)
* moved the plovasp C++ code to c++/triqs_dft_tools/converters/vasp * added global header triqs_dft_tools/triqs_dft_tools.hpp * python dir based on single cmakelist file * registered C++ tests for plovasp * corrected imports for py3 tests for plovasp * corrected block order in sigma_from_file and srvo3_Gloc * exchanged ref files for sigma_from_file, srvo3_Gloc, SrVO3.ref.h5 * moved vasp converter bash scripts from dir shells to bin dir
117 lines
4.0 KiB
Python
117 lines
4.0 KiB
Python
"""
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========
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numpydoc
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========
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Sphinx extension that handles docstrings in the Numpy standard format. [1]
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It will:
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- Convert Parameters etc. sections to field lists.
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- Convert See Also section to a See also entry.
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- Renumber references.
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- Extract the signature from the docstring, if it can't be determined otherwise.
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.. [1] http://projects.scipy.org/scipy/numpy/wiki/CodingStyleGuidelines#docstring-standard
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"""
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import os, re, pydoc
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from docscrape_sphinx import get_doc_object, SphinxDocString
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import inspect
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def mangle_docstrings(app, what, name, obj, options, lines,
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reference_offset=[0]):
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if what == 'module':
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# Strip top title
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title_re = re.compile(r'^\s*[#*=]{4,}\n[a-z0-9 -]+\n[#*=]{4,}\s*',
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re.I|re.S)
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lines[:] = title_re.sub('', "\n".join(lines)).split("\n")
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else:
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doc = get_doc_object(obj, what, "\n".join(lines))
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lines[:] = str(doc).split("\n")
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if app.config.numpydoc_edit_link and hasattr(obj, '__name__') and \
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obj.__name__:
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if hasattr(obj, '__module__'):
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v = dict(full_name="%s.%s" % (obj.__module__, obj.__name__))
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else:
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v = dict(full_name=obj.__name__)
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lines += ['', '.. htmlonly::', '']
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lines += [' %s' % x for x in
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(app.config.numpydoc_edit_link % v).split("\n")]
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# replace reference numbers so that there are no duplicates
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references = []
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for l in lines:
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l = l.strip()
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if l.startswith('.. ['):
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try:
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references.append(int(l[len('.. ['):l.index(']')]))
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except ValueError:
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print("WARNING: invalid reference in %s docstring" % name)
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# Start renaming from the biggest number, otherwise we may
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# overwrite references.
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references.sort()
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if references:
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for i, line in enumerate(lines):
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for r in references:
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new_r = reference_offset[0] + r
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lines[i] = lines[i].replace('[%d]_' % r,
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'[%d]_' % new_r)
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lines[i] = lines[i].replace('.. [%d]' % r,
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'.. [%d]' % new_r)
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reference_offset[0] += len(references)
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def mangle_signature(app, what, name, obj, options, sig, retann):
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# Do not try to inspect classes that don't define `__init__`
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if (inspect.isclass(obj) and
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'initializes x; see ' in pydoc.getdoc(obj.__init__)):
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return '', ''
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if not (callable(obj) or hasattr(obj, '__argspec_is_invalid_')): return
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if not hasattr(obj, '__doc__'): return
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doc = SphinxDocString(pydoc.getdoc(obj))
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if doc['Signature']:
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sig = re.sub("^[^(]*", "", doc['Signature'])
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return sig, ''
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def initialize(app):
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try:
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app.connect('autodoc-process-signature', mangle_signature)
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except:
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monkeypatch_sphinx_ext_autodoc()
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def setup(app, get_doc_object_=get_doc_object):
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global get_doc_object
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get_doc_object = get_doc_object_
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app.connect('autodoc-process-docstring', mangle_docstrings)
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app.connect('builder-inited', initialize)
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app.add_config_value('numpydoc_edit_link', None, True)
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#------------------------------------------------------------------------------
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# Monkeypatch sphinx.ext.autodoc to accept argspecless autodocs (Sphinx < 0.5)
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#------------------------------------------------------------------------------
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def monkeypatch_sphinx_ext_autodoc():
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global _original_format_signature
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import sphinx.ext.autodoc
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if sphinx.ext.autodoc.format_signature is our_format_signature:
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return
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print("[numpydoc] Monkeypatching sphinx.ext.autodoc ...")
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_original_format_signature = sphinx.ext.autodoc.format_signature
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sphinx.ext.autodoc.format_signature = our_format_signature
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def our_format_signature(what, obj):
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r = mangle_signature(None, what, None, obj, None, None, None)
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if r is not None:
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return r[0]
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else:
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return _original_format_signature(what, obj)
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