/******************************************************************************* * * TRIQS: a Toolbox for Research in Interacting Quantum Systems * * Copyright (C) 2011 by O. Parcollet * * TRIQS is free software: you can redistribute it and/or modify it under the * terms of the GNU General Public License as published by the Free Software * Foundation, either version 3 of the License, or (at your option) any later * version. * * TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more * details. * * You should have received a copy of the GNU General Public License along with * TRIQS. If not, see . * ******************************************************************************/ #ifndef TRIQS_H5_STRING_H #define TRIQS_H5_STRING_H #include "./group.hpp" #include namespace triqs { inline std::string get_triqs_hdf5_data_scheme(std::string const & ) { return "string";} namespace h5 { /** * \brief Write a string into an hdf5 file * \param f The h5 file or group of type H5::H5File or H5::Group * \param name The name of the hdf5 array in the file/group where the stack will be stored * \param value The string * \exception The HDF5 exceptions will be caught and rethrown as TRIQS_RUNTIME_ERROR (with a full stackstrace, cf triqs doc). */ inline void h5_write (group g, std::string const & name, std::string const & value) { try { H5::StrType strdatatype(H5::PredType::C_S1, value.size()); H5::DataSet ds = g.create_dataset(name, strdatatype, H5::DataSpace()); ds.write((void*)(value.c_str()), strdatatype ); } TRIQS_ARRAYS_H5_CATCH_EXCEPTION; } /** * \brief Read a string from an hdf5 file * \param f The h5 file or group of type H5::H5File or H5::Group * \param name The name of the hdf5 array in the file/group where the stack will be stored * \param value The string to fill * \exception The HDF5 exceptions will be caught and rethrown as TRIQS_RUNTIME_ERROR (with a full stackstrace, cf triqs doc). */ inline void h5_read (group g, std::string const & name, std::string & value) { try { H5::DataSet ds = g.open_dataset(name); H5::DataSpace dataspace = ds.getSpace(); int rank = dataspace.getSimpleExtentNdims(); if (rank != 0) TRIQS_RUNTIME_ERROR << "Reading a string and got rank !=0"; size_t size = ds.getStorageSize(); H5::StrType strdatatype(H5::PredType::C_S1, size); std::vector buf(size+1, 0x00); ds.read( (void *)(&buf[0]), strdatatype, H5::DataSpace(), H5::DataSpace() ); value = ""; value.append( &(buf.front()) ); } TRIQS_ARRAYS_H5_CATCH_EXCEPTION; } /*********************************** 1d array and std::vector of string *********************************/ namespace detail { template void write_1darray_vector_of_string_impl (group g, std::string const & name, ArrayVectorOfStringType const & V) { size_t s=0; for (auto & x : V) s = std::max(s,x.size()); try { H5::DataSet ds; H5::StrType strdatatype(H5::PredType::C_S1, s); const size_t n = V.size(); std::vector buf(n*(s+1), 0x00); size_t i=0; for (auto & x : V) {strcpy( &buf[i*s], x.c_str()); ++i;} mini_vector L; L[0]=V.size(); mini_vector S; S[0]=1; auto d_space = dataspace_from_LS<1,false > (L,L,S); ds = g.create_dataset(name, strdatatype, d_space ); ds.write( (void *)(&buf[0]),strdatatype, d_space ); } TRIQS_ARRAYS_H5_CATCH_EXCEPTION; } //------------------------------------------------------------ template void read_1darray_vector_of_string_impl (group g, std::string const & name, ArrayVectorOfStringType & V) { try { H5::DataSet ds = g.open_dataset(name); H5::DataSpace dataspace = ds.getSpace(); mini_vector dims_out; int ndims = dataspace.getSimpleExtentDims( &dims_out[0], NULL); if (ndims !=1) TRIQS_RUNTIME_ERROR << "triqs::h5 : Trying to read 1d array/vector . Rank mismatch : the array stored in the hdf5 file has rank = "< buf(Len*(size+1), 0x00); mini_vector L; L[0]=V.size(); mini_vector S; S[0]=1; auto d_space = dataspace_from_LS<1,false > (L,L,S); ds.read( (void *)(&buf[0]),strdatatype, d_space ); size_t i=0; for (auto & x : V) { x = ""; x.append(&buf[i*(size)]); ++i;} } TRIQS_ARRAYS_H5_CATCH_EXCEPTION; } }// detail }} #endif