/******************************************************************************* * * TRIQS: a Toolbox for Research in Interacting Quantum Systems * * Copyright (C) 2011-2013 by O. Parcollet * * TRIQS is free software: you can redistribute it and/or modify it under the * terms of the GNU General Public License as published by the Free Software * Foundation, either version 3 of the License, or (at your option) any later * version. * * TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more * details. * * You should have received a copy of the GNU General Public License along with * TRIQS. If not, see . * ******************************************************************************/ #ifndef TRIQS_H5_BASE_H #define TRIQS_H5_BASE_H #include #include #include #include "hdf5_hl.h" #include namespace triqs { inline std::string get_triqs_hdf5_data_scheme(bool) { return "bool";} inline std::string get_triqs_hdf5_data_scheme(int) { return "int";} inline std::string get_triqs_hdf5_data_scheme(long) { return "long";} inline std::string get_triqs_hdf5_data_scheme(long long) { return "long long";} inline std::string get_triqs_hdf5_data_scheme(unsigned int) { return "int";} inline std::string get_triqs_hdf5_data_scheme(unsigned long) { return "unsigned long";} inline std::string get_triqs_hdf5_data_scheme(unsigned long long) { return "unsigned long long";} inline std::string get_triqs_hdf5_data_scheme(float) { return "float";} inline std::string get_triqs_hdf5_data_scheme(double) { return "double";} inline std::string get_triqs_hdf5_data_scheme(long double) { return "long double";} inline std::string get_triqs_hdf5_data_scheme(std::complex) { return "complex";} namespace h5 { using utility::mini_vector; // conversion of C type to HDF5 native inline H5::PredType native_type_from_C(char) { return H5::PredType::NATIVE_CHAR; } inline H5::PredType native_type_from_C(signed char) { return H5::PredType::NATIVE_SCHAR; } inline H5::PredType native_type_from_C(unsigned char) { return H5::PredType::NATIVE_UCHAR; } inline H5::PredType native_type_from_C(short) { return H5::PredType::NATIVE_SHORT; } inline H5::PredType native_type_from_C(unsigned short) { return H5::PredType::NATIVE_USHORT; } inline H5::PredType native_type_from_C(int) { return H5::PredType::NATIVE_INT; } inline H5::PredType native_type_from_C(unsigned) { return H5::PredType::NATIVE_UINT; } inline H5::PredType native_type_from_C(long) { return H5::PredType::NATIVE_LONG; } inline H5::PredType native_type_from_C(unsigned long) { return H5::PredType::NATIVE_ULONG; } inline H5::PredType native_type_from_C(long long) { return H5::PredType::NATIVE_LLONG; } inline H5::PredType native_type_from_C(unsigned long long) { return H5::PredType::NATIVE_ULLONG; } inline H5::PredType native_type_from_C(float) { return H5::PredType::NATIVE_FLOAT; } inline H5::PredType native_type_from_C(double) { return H5::PredType::NATIVE_DOUBLE; } inline H5::PredType native_type_from_C(long double) { return H5::PredType::NATIVE_LDOUBLE; } inline H5::PredType native_type_from_C(bool) { return H5::PredType::NATIVE_SCHAR; } inline H5::PredType native_type_from_C(std::string) { return H5::PredType::C_S1; } // conversion of C type to HDF5 native // NEED TO CHANGE THIS ? It is not standard... We should fix a standard or have a trait inline H5::PredType h5_type_from_C(char) { return H5::PredType::NATIVE_CHAR; } inline H5::PredType h5_type_from_C(signed char) { return H5::PredType::NATIVE_SCHAR; } inline H5::PredType h5_type_from_C(unsigned char) { return H5::PredType::NATIVE_UCHAR; } inline H5::PredType h5_type_from_C(short) { return H5::PredType::NATIVE_SHORT; } inline H5::PredType h5_type_from_C(unsigned short) { return H5::PredType::NATIVE_USHORT; } inline H5::PredType h5_type_from_C(int) { return H5::PredType::NATIVE_INT; } inline H5::PredType h5_type_from_C(unsigned) { return H5::PredType::NATIVE_UINT; } inline H5::PredType h5_type_from_C(long) { return H5::PredType::NATIVE_LONG; } inline H5::PredType h5_type_from_C(unsigned long) { return H5::PredType::NATIVE_ULONG; } inline H5::PredType h5_type_from_C(long long) { return H5::PredType::NATIVE_LLONG; } inline H5::PredType h5_type_from_C(unsigned long long) { return H5::PredType::NATIVE_ULLONG; } inline H5::PredType h5_type_from_C(float) { return H5::PredType::NATIVE_FLOAT; } inline H5::PredType h5_type_from_C(double) { return H5::PredType::NATIVE_DOUBLE; } inline H5::PredType h5_type_from_C(long double) { return H5::PredType::NATIVE_LDOUBLE; } inline H5::PredType h5_type_from_C(bool) { return H5::PredType::NATIVE_SCHAR; } inline H5::PredType h5_type_from_C(std::string) { return H5::PredType::C_S1; } // If it is complex return T else T template struct remove_complex { typedef T type;}; template struct remove_complex > { typedef T type;}; template struct remove_complex > { typedef T type;}; template struct remove_complex: remove_complex{}; //------------- compute the data type (removing complex) ---------------------------------- // in memory template H5::PredType data_type_memory () { return native_type_from_C(typename remove_complex::type()); } // the type of data to put in the file_or_group template H5::PredType data_type_file () { return h5_type_from_C(typename remove_complex::type());} //------------- compute void * pointer to the data ---------------------------------- template typename std::enable_if< boost::is_complex::value, typename std::conditional::value, const void *, void *>::type >::type get_data_ptr (S * p) { typedef typename std::conditional::value, const typename S::value_type, typename S::value_type>::type T; return reinterpret_cast(p); } template typename std::enable_if< !boost::is_complex::value, typename std::conditional::value, const void *, void *>::type >::type get_data_ptr (S * p) {return p;} // dataspace from lengths and strides. Correct for the complex. strides must be >0 template H5::DataSpace dataspace_from_LS ( mini_vector const & Ltot, mini_vector const & L, mini_vector const & S, mini_vector const & offset = mini_vector() ) { static const unsigned int rank = R + (IsComplex ? 1 : 0); hsize_t totdimsf[rank], dimsf [rank], stridesf[rank], offsetf[rank]; // dataset dimensions for (size_t u=0; ucreateAttribute(name.c_str(), strdatatype, attr_dataspace); //myatt_in.write(strdatatype, strwritebuf); myatt_in.write(strdatatype, (void *)(value.c_str())); } /****************** Read string attribute *********************************************/ /// Return the attribute name of obj, and "" if the attribute does not exist. inline std::string read_string_attribute (H5::H5Object const * obj, std::string name ) { std::string value =""; H5::Attribute attr; if (H5LTfind_attribute(obj -> getId(), name.c_str() )==0) return value;// not present // can not find how to get the size with hl. Using full interface //herr_t err2 = H5LTget_attribute_string(gr.getId(), x.c_str(), name.c_str() , &(buf.front()) ) ; //value.append( &(buf.front()) ); try { attr= obj->openAttribute(name.c_str());} catch (H5::AttributeIException) { return value;} try { H5::DataSpace dataspace = attr.getSpace(); int rank = dataspace.getSimpleExtentNdims(); if (rank != 0) TRIQS_RUNTIME_ERROR << "Reading a string attribute and got rank !=0"; size_t size = attr.getStorageSize(); H5::StrType strdatatype(H5::PredType::C_S1, size+1); std::vector buf(size+1, 0x00); attr.read(strdatatype, (void *)(&buf[0])); value.append( &(buf.front()) ); } TRIQS_ARRAYS_H5_CATCH_EXCEPTION; return value; } }} #endif