/******************************************************************************* * * TRIQS: a Toolbox for Research in Interacting Quantum Systems * * Copyright (C) 2011-2014 by O. Parcollet * * TRIQS is free software: you can redistribute it and/or modify it under the * terms of the GNU General Public License as published by the Free Software * Foundation, either version 3 of the License, or (at your option) any later * version. * * TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more * details. * * You should have received a copy of the GNU General Public License along with * TRIQS. If not, see . * ******************************************************************************/ #include "./base.hpp" namespace triqs { namespace h5 { //------------------------------------------------ // dataspace from lengths and strides. Correct for the complex. strides must be >0 dataspace dataspace_from_LS(int R, bool is_complex, hsize_t const *Ltot, hsize_t const *L, hsize_t const *S, hsize_t const *offset) { int rank = R + (is_complex ? 1 : 0); hsize_t totdimsf[rank], dimsf[rank], stridesf[rank], offsetf[rank]; // dataset dimensions for (size_t u = 0; u < R; ++u) { offsetf[u] = (offset ? offset[u] : 0); dimsf[u] = L[u]; totdimsf[u] = Ltot[u]; stridesf[u] = S[u]; } if (is_complex) { offsetf[rank - 1] = 0; dimsf[rank - 1] = 2; totdimsf[rank - 1] = 2; stridesf[rank - 1] = 1; } dataspace ds = H5Screate_simple(rank, totdimsf, NULL); if (!ds.is_valid()) TRIQS_RUNTIME_ERROR << "Can not create the dataset"; herr_t err = H5Sselect_hyperslab(ds, H5S_SELECT_SET, offsetf, stridesf, dimsf, NULL); if (err < 0) TRIQS_RUNTIME_ERROR << "Can not set hyperslab"; return ds; } /****************** Write string attribute *********************************************/ void write_string_attribute(hid_t id, std::string name, std::string value) { datatype strdatatype = H5Tcopy(H5T_C_S1); auto status = H5Tset_size(strdatatype, value.size() + 1); // auto status = H5Tset_size(strdatatype, H5T_VARIABLE); if (status < 0) TRIQS_RUNTIME_ERROR << "Internal error in H5Tset_size"; dataspace space = H5Screate(H5S_SCALAR); attribute attr = H5Acreate2(id, name.c_str(), strdatatype, space, H5P_DEFAULT, H5P_DEFAULT); if (!attr.is_valid()) TRIQS_RUNTIME_ERROR << "Can not create the attribute " << name; status = H5Awrite(attr, strdatatype, (void *)(value.c_str())); if (status < 0) TRIQS_RUNTIME_ERROR << "Can not write the attribute " << name; } /****************** Read string attribute *********************************************/ /// Return the attribute name of obj, and "" if the attribute does not exist. std::string read_string_attribute(hid_t id, std::string name) { // if the attribute is not present, return 0 if (H5LTfind_attribute(id, name.c_str()) == 0) return ""; // not present attribute attr = H5Aopen(id, name.c_str(), H5P_DEFAULT); if (!attr.is_valid()) TRIQS_RUNTIME_ERROR << "Can not open the attribute " << name; dataspace space = H5Aget_space(attr); int rank = H5Sget_simple_extent_ndims(space); if (rank != 0) TRIQS_RUNTIME_ERROR << "Reading a string attribute and got rank !=0"; datatype strdatatype = H5Aget_type(attr); std::vector buf(H5Aget_storage_size(attr) + 1, 0x00); auto err = H5Aread(attr, strdatatype, (void *)(&buf[0])); if (err < 0) TRIQS_RUNTIME_ERROR << "Can not read the attribute" << name; std::string ret = ""; ret.append(&(buf.front())); return ret; } } }