/******************************************************************************* * * TRIQS: a Toolbox for Research in Interacting Quantum Systems * * Copyright (C) 2011-2014 by O. Parcollet * * TRIQS is free software: you can redistribute it and/or modify it under the * terms of the GNU General Public License as published by the Free Software * Foundation, either version 3 of the License, or (at your option) any later * version. * * TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more * details. * * You should have received a copy of the GNU General Public License along with * TRIQS. If not, see . * ******************************************************************************/ #include "./vector.hpp" #include "./base.hpp" namespace triqs { namespace h5 { void h5_write(group g, std::string const &name, std::vector const &V) { size_t s = 0; for (auto &x : V) s = std::max(s, x.size()); datatype strdatatype = H5Tcopy (H5T_C_S1); auto status = H5Tset_size (strdatatype, s); //auto status = H5Tset_size (strdatatype, H5T_VARIABLE); const size_t n = V.size(); std::vector buf(n * (s + 1), 0x00); size_t i = 0; for (auto &x : V) { strcpy(&buf[i * s], x.c_str()); ++i; } hsize_t L[1], S[1]; L[0] = V.size(); S[0] = 1; auto d_space = dataspace_from_LS(1, false, L, L, S); h5::dataset ds = g.create_dataset(name, strdatatype, d_space); auto err = H5Dwrite(ds, strdatatype, d_space, H5S_ALL, H5P_DEFAULT, &buf[0]); if (err < 0) TRIQS_RUNTIME_ERROR << "Error writing the vector " << name << " in the group" << g.name(); } // ----- read ----- void h5_read(group g, std::string const &name, std::vector &V) { dataset ds = g.open_dataset(name); h5::dataspace d_space = H5Dget_space(ds); mini_vector dims_out; int ndims = H5Sget_simple_extent_dims(d_space, dims_out.ptr(), NULL); if (ndims != 1) TRIQS_RUNTIME_ERROR << "triqs::h5 : Trying to read 1d array/vector . Rank mismatch : the array stored in the hdf5 file has rank = " << ndims; size_t Len = dims_out[0]; V.resize(Len); size_t size = H5Dget_storage_size(ds); datatype strdatatype = H5Tcopy (H5T_C_S1); auto status = H5Tset_size (strdatatype, size); //auto status = H5Tset_size (strdatatype, H5T_VARIABLE); std::vector buf(Len * (size + 1), 0x00); hsize_t L[1], S[1]; L[0] = V.size(); S[0] = 1; auto d_space2 = dataspace_from_LS(1, false, L, L, S); auto err = H5Dread(ds, strdatatype, d_space2, H5S_ALL, H5P_DEFAULT, &buf[0]); if (err < 0) TRIQS_RUNTIME_ERROR << "Error reading the vector " << name << " in the group" << g.name(); size_t i = 0; for (auto &x : V) { x = ""; x.append(&buf[i * (size)]); ++i; } } // implementation for vector of double and complex namespace { // the dataspace corresponding to the array. Contiguous data only... template dataspace data_space_for_vector(std::vector const &V) { hsize_t L[1], S[1]; S[0] = 1; L[0] = V.size(); return h5::dataspace_from_LS(1, triqs::is_complex::value, L, L, S); } //------------------------------------ template inline void h5_write_vector_impl(group g, std::string const &name, std::vector const &V) { dataset ds = g.create_dataset(name, h5::data_type_file(), data_space_for_vector(V)); auto err = H5Dwrite(ds, h5::data_type_memory(), data_space_for_vector(V), H5S_ALL, H5P_DEFAULT, &V[0]); if (err < 0) TRIQS_RUNTIME_ERROR << "Error writing the vector<....> " << name << " in the group" << g.name(); // if complex, to be python compatible, we add the __complex__ attribute if (triqs::is_complex::value) h5::write_string_attribute(ds, "__complex__", "1"); } //------------------------------------ template inline void h5_read_impl(group g, std::string const &name, std::vector &V) { dataset ds = g.open_dataset(name); h5::dataspace d_space = H5Dget_space(ds); static const unsigned int Rank = 1 + (triqs::is_complex::value ? 1 : 0); int rank = H5Sget_simple_extent_ndims(d_space); if (rank != Rank) TRIQS_RUNTIME_ERROR << "triqs : h5 : read vector. Rank mismatch : the array stored in the hdf5 file has rank = " << rank; hsize_t dims_out[Rank]; H5Sget_simple_extent_dims(d_space, dims_out, NULL); V.resize(dims_out[0]); auto err = H5Dread(ds, h5::data_type_memory(), data_space_for_vector(V), d_space, H5P_DEFAULT, &V[0]); if (err < 0) TRIQS_RUNTIME_ERROR << "Error reading the vector<...> " << name << " in the group" << g.name(); } } // impl namespace void h5_write(group f, std::string const &name, std::vector const &V) { h5_write_vector_impl(f, name, V); } void h5_write(group f, std::string const &name, std::vector> const &V) { h5_write_vector_impl(f, name, V); } void h5_read(group f, std::string const &name, std::vector &V) { h5_read_impl(f, name, V); } void h5_read(group f, std::string const &name, std::vector> &V) { h5_read_impl(f, name, V); } } }