################################################################################ # # TRIQS: a Toolbox for Research in Interacting Quantum Systems # # Copyright (C) 2011 by M. Ferrero, O. Parcollet # # TRIQS is free software: you can redistribute it and/or modify it under the # terms of the GNU General Public License as published by the Free Software # Foundation, either version 3 of the License, or (at your option) any later # version. # # TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS # FOR A PARTICULAR PURPOSE. See the GNU General Public License for more # details. # # You should have received a copy of the GNU General Public License along with # TRIQS. If not, see . # ################################################################################ import numpy from tight_binding import TBLattice __all__ = ['TBSuperLattice'] def nint_strict(x, precision=1.e-9): """ Round array x to the closest integer and asserts that its distance to this integer is less than precision. precision must satisfy : precision >0 and precision <0.5 """ assert precision >0 and precision <0.5, "nint_strict : precision makes no sense !" i = numpy.floor(x+0.5) assert abs(i-x).max() < precision, repr(i) + "\n "+repr(x) + "\n The Float is not close enough to the integer " return i.astype(numpy.int) class TBSuperLattice(TBLattice): """ Builds a superlattice on top of a base Lattice, by picking superlattice units and optionally the cluster points. """ def __init__(self, tb_lattice, super_lattice_units, cluster_sites = None, remove_internal_hoppings = False): """ * tb_lattice: The underlying lattice * super_lattice_units: The unit vectors of the superlattice in the tb_lattice (integer) coordinates * cluster_sites [None]: Coordinates of the cluster in tb_lattice coordinates. If None, an automatic computation of cluster positions is made as follows: it takes all points whose coordinates in the basis of the superlattice are in [0, 1[^dimension * remove_internal_hoppings: If true, the hopping terms are removed inside the cluster. Useful to add Hartree Fock terms at the boundary of a cluster, e.g. """ if not isinstance(tb_lattice, TBLattice): raise ValueError, "tb_lattice should be an instance of TBLattice" self.__BaseLattice = tb_lattice dim = tb_lattice.dim try: self.__super_lattice_units = numpy.array(super_lattice_units, copy=True) assert self.__super_lattice_units.shape == (dim, dim) except: raise ValueError, "super_lattice_units is not correct. Cf Doc. value is %s, dim = %s "%(super_lattice_units,dim) Ncluster_sites = int(numpy.rint(abs(numpy.linalg.det(self.__super_lattice_units )))) assert Ncluster_sites >0, "Superlattice vectors are not independant !" self._M = self.__super_lattice_units.transpose() self._Mtilde = numpy.array(numpy.rint(numpy.linalg.inv(self._M)*Ncluster_sites), dtype = int) self.__remove_internal_hoppings = remove_internal_hoppings #self.norb = tb_lattice.NOrbitalsInUnitCell self.Norb = tb_lattice.NOrbitalsInUnitCell * Ncluster_sites # cluster_sites computation if cluster_sites!=None: self.__cluster_sites = list(cluster_sites)[:] else: # Computes the position of the cluster automatically self.__cluster_sites = [] #We tile the super-cell with the tb_lattice points and retains # the points inside it and store it. M=numpy.array(self.__super_lattice_units) assert M.shape==tuple(2*[dim]), "Tiling Construct: super_lattice_units does not have the correct size" #Minv = Ncluster_sites*numpy.linalg.inverse(M) #+0.5 # +0.5 is for the round #Mtilde = Minv.astype(numpy.Int) # now is integer. Mtilde = nint_strict(Ncluster_sites*numpy.linalg.inv(M)) # round to the closest integer, with assert that precision is <1.e-9 if dim==1: a=(max(M[0,:]), 0, 0 ) elif dim==2: a=(2*max(M[0,:]), 2*max(M[1,:]), 0 ) elif dim==3: a= (3*max(M[0,:]), 3*max(M[1,:]), 3*max(M[2,:])) else: raise ValueError, "dim is not between 1 and 3 !!" r = lambda i: range(-a[i] , a[i]+1) for nx in r(0): for ny in r(1): for nz in r(2): nv = numpy.array([nx, ny, nz][0:dim]) k_sl = numpy.dot(Mtilde, nv) if (min(k_sl) >= 0) and (max(k_sl) < Ncluster_sites ): # The point is a point of the cluster. We store it. self.__cluster_sites.append(nv.tolist()) assert len(self.__cluster_sites) == Ncluster_sites, """Number of cluster positions incorrect (compared to the volume of unit cell of the Superlattice)""" self.Ncluster_sites = Ncluster_sites # creating a dictionnary position_of_sites -> number e.g. (1, 0): 2 etc... # self._clustersites_hash = dict ([ (tuple(pos), n) for n, pos in enumerate(self.cluster_sites)]) # Compute the new Hopping in the supercell Hopping = self.fold(tb_lattice.hopping_dict(), remove_internal_hoppings) if 0: for k, v in Hopping.items(): print k print v.real # Compute the new units of the lattice in real coordinates Units = numpy.dot(self.__super_lattice_units, tb_lattice.Units) # Positions and names of orbitals in the supercell: just translate all orbitals for cluster site positions # in R^3 coordinates. Orbital_Positions = [POS + tb_lattice.latt_to_real_x(CS) for POS in tb_lattice.OrbitalPositions for CS in self.__cluster_sites] #Orbital_Names = [ '%s%s'%(n, s) for n in tb_lattice.OrbitalNames for s in range(Ncluster_sites)] site_index_list, orbital_index_list = range(1, Ncluster_sites+1), tb_lattice.OrbitalNames if len(orbital_index_list)==1: Orbital_Names= [ s for s in site_index_list ] elif len(site_index_list)==1 and len(orbital_index_list)>1: Orbital_Names= [ o for o in orbital_index_list] elif len(site_index_list)>1 and len(orbital_index_list)>1: Orbital_Names= [ (pos, o) for o in orbital_index_list for pos in site_index_list] #print tb_lattice.OrbitalNames #Orbital_Names TBLattice.__init__(self, Units, Hopping, Orbital_Positions, Orbital_Names) # we pass False since the folding has arealdy been done in tb_lattice assert self.Norb == self.NOrbitalsInUnitCell __HDF_reduction__ = ['__BaseLattice', '__super_lattice_units', '__cluster_sites', '__remove_internal_hoppings'] def __reduce__ (self): return tuple([getattr(self, x) for x in self.__HDF_reduction__]) def fold(self, D1, remove_internal=False, create_zero = None): """ Input: a function r-> f(r) on the tb_lattice given as a dictionnary Output: the function R-> F(R) folded on the superlattice. Only requirement is that f(r)[orbital1, orbital2] is properly defined. Hence f(r) can be a numpy, a GFBloc, etc... """ #Res , norb = {} , self.__BaseLattice.NOrbitalsInUnitCell Res , norb = {} , len(D1.values()[0]) pack = self.pack_index_site_orbital for nsite, CS in enumerate(self.__cluster_sites): for disp, t in D1.items(): R, alpha = self.change_coordinates_L_to_SL(numpy.array(CS)+numpy.array(disp)) if R not in Res: Res[R] = create_zero() if create_zero else numpy.zeros((self.Norb, self.Norb), dtype = type(t[0,0])) if not(remove_internal) or R!= self.tb_lattice.dim*(0, ): for orb1 in range(norb): for orb2 in range(norb): Res[R][pack(nsite, orb1), pack(alpha, orb2)] += t[orb1, orb2] return Res def change_coordinates_SL_to_L(self, R , alpha): """Given a point in the supercell R, site (number) alpha, it computes its position on the tb_lattice in lattice coordinates""" return numpy.dot (self._M, numpy.array(R)) + self.__cluster_sites[alpha,:] def change_coordinates_L_to_SL(self, x): """Given a point on the tb_lattice in lattice coordinates, returns its coordinates (R, alpha) in the Superlattice""" aux = numpy.dot(self._Mtilde, numpy.array(x)) R = aux // self.Ncluster_sites dx = list (x - numpy.dot (self._M, R) ) # force int ? return tuple(R), self.__cluster_sites.index(dx) def pack_index_site_orbital(self, n_site, n_orbital): """ nsite and n_orbital must start at 0""" return n_site + (n_orbital ) * self.Ncluster_sites def unpack_index_site_orbital (self, index): """Inverse of pack_index_site_orbital""" n_orbital = (index)//self.Ncluster_sites n_site = index - n_orbital*self.Ncluster_sites return n_site, n_orbital def cluster_sites(self): """ Generate the position of the cluster site in the tb_lattice coordinates. """ for pos in self.__cluster_sites: yield pos def __repr__(self): def f(A): return list([ tuple(x) for x in A]) return """SuperLattice class: \n Base TBLattice: %s SuperLattice Units: %s Remove internal Hoppings: %s Cluster site positions: %s"""%(self.__BaseLattice, f(self.__super_lattice_units), self.__cluster_sites, self.__remove_internal_hoppings)