Major update and Cleaning

-consistent indends in all cmake files
-add static analyzer checks with both cppcheck and clang-tidy
-add dynamic analyzer checks with Address Sanitizer and option ASAN
-add dynamic analyzer checks with Undefined Behavior Sanitizer and option UBSAN
-Further Cleaning and Comments

.clang-tidy

@@ -1 +1,2 @@
 Checks: '-*,modernize-*,cppcoreguidelines-*'
+HeaderFilterRegex: 'app4triqs'

.travis.yml

@@ -37,15 +37,11 @@ script:
   - make -j8 install
   - cd $TRAVIS_BUILD_DIR
   - source root_install/share/triqsvars.sh
-  # ===== Set up CTINT and Test using fsanitize=address
+  # ===== Set up CTINT and Test with Sanitizer Checks
   - mkdir build && cd build
-  - cmake .. -DCMAKE_BUILD_TYPE=Debug -DCMAKE_CXX_COMPILER=/usr/bin/${CXX} -DGTAU_IS_COMPLEX=ON -DINTERACTION_IS_COMPLEX=ON -DCMAKE_CXX_FLAGS='-fsanitize=address -fno-omit-frame-pointer -fuse-ld=gold -Wno-register -Wno-macro-redefined'
+  - cmake .. -DCMAKE_BUILD_TYPE=Debug -DCMAKE_CXX_COMPILER=/usr/bin/${CXX} -DASAN=ON -DUBSAN=ON
-  - make -j8
+  - export UBSAN_SYMBOLIZER_PATH=/usr/lib/llvm-5.0/bin/llvm-symbolizer
   - export ASAN_SYMBOLIZER_PATH=/usr/lib/llvm-5.0/bin/llvm-symbolizer
   - export ASAN_OPTIONS=symbolize=1:detect_leaks=0
   - export CTEST_OUTPUT_ON_FAILURE=1
-  - cd test/c++ && ctest
+  - make -j8 && make test
-  - if [ "$CXX" = g++ ]; then export LD_PRELOAD=/usr/lib/gcc/x86_64-linux-gnu/7/libasan.so; elif [ "$CXX" = clang++ ]; then export LD_PRELOAD=/usr/lib/llvm-5.0/lib/clang/5.0.1/lib/linux/libclang_rt.asan-x86_64.so; fi
-  - cd ../python && ctest
-  - cd ../../
-  - unset LD_PRELOAD

CMakeLists.txt

@@ -2,7 +2,7 @@
 set(APP4TRIQS_VERSION "1.5")
 
 # Start configuration
-cmake_minimum_required(VERSION 2.8)
+cmake_minimum_required(VERSION 3.6)
 project(app4triqs CXX)
 
 # Default to Release build type
@@ -14,13 +14,10 @@ message( STATUS "-------- BUILD-TYPE: ${CMAKE_BUILD_TYPE} --------")
 # Use shared libraries
 set(BUILD_SHARED_LIBS ON)
 
-# Load TRIQS and Cpp2Py
+# Load Dependencies
 find_package(TRIQS ${APP4TRIQS_VERSION} EXACT REQUIRED)
 find_package(Cpp2Py ${APP4TRIQS_VERSION} EXACT REQUIRED)
 
-# We will need the FindNNFT of triqs, so we adjust CMake Module Path to find it
-list(APPEND CMAKE_MODULE_PATH ${TRIQS_ROOT}/share/cmake)
-
 # Default Install directory to TRIQS_ROOT if not given. Checks an absolute name is given.
 if(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT OR (NOT IS_ABSOLUTE ${CMAKE_INSTALL_PREFIX}))
   message(STATUS "No install prefix given (or invalid). Defaulting to TRIQS_ROOT")
@@ -35,9 +32,12 @@ message(STATUS "app4triqs git hash: ${APP4TRIQS_GIT_HASH}")
 # Set up the rpath for compiled executable
 triqs_set_rpath_for_all_targets()
 
+# Build and install the app4triqs library
 add_subdirectory(c++/app4triqs)
+
+# Build and install the app4triqs python module
 if(${TRIQS_WITH_PYTHON_SUPPORT})
- add_subdirectory(python/app4triqs)
+  add_subdirectory(python/app4triqs)
 endif()
 
 # Tests

c++/app4triqs/CMakeLists.txt

@@ -1,20 +1,77 @@
-file(GLOB_RECURSE sources RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.cpp)
+file(GLOB_RECURSE sources *.cpp *.hpp)
 add_library(app4triqs_c ${sources})
 
 target_link_libraries(app4triqs_c PUBLIC triqs)
 target_compile_options(app4triqs_c PUBLIC -std=c++17)
 target_include_directories(app4triqs_c PUBLIC $<BUILD_INTERFACE:${CMAKE_SOURCE_DIR}/c++>)
-
 target_compile_definitions(app4triqs_c PRIVATE
 				APP4TRIQS_GIT_HASH=${APP4TRIQS_GIT_HASH}
 			    	TRIQS_GIT_HASH=${TRIQS_GIT_HASH}
-				$<$<CONFIG:Debug>:DEBUG_APP4TRIQS>
+				$<$<CONFIG:Debug>:APP4TRIQS_DEBUG>
 			        $<$<CONFIG:Debug>:TRIQS_ARRAYS_ENFORCE_BOUNDCHECK>
-				#$<$<BOOL:${MyOption}>:MYOPTION> # Add compile definintions for option
 			 	)
 
-# Install
+# Install library and headers
 install(TARGETS app4triqs_c EXPORT app4triqs-targets DESTINATION lib)
-
-# If other applications need our headers, we can install them as well
 install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} DESTINATION include FILES_MATCHING PATTERN "*.hpp" PATTERN "*.h")
+
+
+# ========= Static Analyzer Checks ==========
+
+# Locate static analyzer tools
+find_program(CPPCHECK_EXECUTABLE NAMES "cppcheck" PATHS ENV PATH)
+find_program(CLANG_TIDY_EXECUTABLE NAMES "clang-tidy" PATHS ENV PATH)
+
+# Run clang-tidy if found
+if(CLANG_TIDY_EXECUTABLE)
+  message(STATUS "clang-tidy found: ${CLANG_TIDY_EXECUTABLE}")
+  set_target_properties(app4triqs_c PROPERTIES CXX_CLANG_TIDY "${CLANG_TIDY_EXECUTABLE}")
+else()
+  message(STATUS "clang-tidy not found in $PATH. Please consider installing clang-tidy for additional checks!")
+endif()
+
+# Run cppcheck if found
+if(CPPCHECK_EXECUTABLE)
+  message(STATUS "cppcheck found: ${CPPCHECK_EXECUTABLE}")
+  add_custom_command(
+	TARGET app4triqs_c
+	COMMAND echo "--- Running cppcheck ---\n"
+	COMMAND ${CPPCHECK_EXECUTABLE}
+	--enable=warning,style,performance,portability
+        --std=c++14
+	--template=gcc
+        --verbose
+        --quiet
+        ${sources}
+	COMMAND echo "------------------------\n"
+ )
+else()
+  message(STATUS "cppcheck not found in $PATH. Please consider installing cppcheck for additional checks!")
+endif()
+
+
+# ========= Dynamic Analyzer Checks ==========
+
+# Address Sanitizer
+option(ASAN OFF "Compile library and executables with LLVM Address Sanitizer")
+if(ASAN)
+  if(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
+    message(FATAL_ERROR "Address Sanitizer Checks currently not compatible with OSX.")
+  endif()
+  list(APPEND CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/share/cmake)
+  find_package(libasan_rt REQUIRED)
+  target_compile_options(app4triqs_c PUBLIC -fsanitize=address -fno-omit-frame-pointer)
+  target_link_libraries(app4triqs_c INTERFACE "-fsanitize=address -fno-omit-frame-pointer")
+endif()
+
+# Undefined Behavior Sanitizer
+option(UBSAN OFF "Compile library and executables with LLVM Undefined Behavior Sanitizer")
+if(UBSAN)
+  if(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
+    message(FATAL_ERROR "Undefined Behavior Sanitizer Checks currently not compatible with OSX.")
+  endif()
+  list(APPEND CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/share/cmake)
+  find_package(libubsan_rt REQUIRED)
+  target_compile_options(app4triqs_c PUBLIC -fsanitize=undefined -fno-omit-frame-pointer -fno-sanitize=vptr)
+  target_link_libraries(app4triqs_c INTERFACE "-fsanitize=undefined -fno-omit-frame-pointer")
+endif()

c++/app4triqs/toto.hpp

@@ -14,20 +14,22 @@ namespace app4triqs {
     int i = 0.0;
 
     public:
-    toto() = default;
+    toto()  = default;
-
-    // Copy construction
-    toto(toto const &) = default;
-    toto(toto &&)      = default;
 
     /**
      * Construct from integer
      *
      * @param i_ a scalar
      */
-    toto(int i_) : i(i_) {}
+    explicit toto(int i_) : i(i_) {}
 
-    /// Copy assignment
+    ~toto() = default;
+
+    // Copy/Move construction
+    toto(toto const &) = default;
+    toto(toto &&)      = default;
+
+    /// Copy/Move assignment
     toto &operator=(toto const &) = default;
     toto &operator=(toto &&) = default;
 
@@ -45,7 +47,6 @@ namespace app4triqs {
     static std::string hdf5_scheme() { return "Toto"; }
 
     friend void h5_write(triqs::h5::group grp, std::string subgroup_name, toto const &m);
-
     friend void h5_read(triqs::h5::group grp, std::string subgroup_name, toto &m);
 
     /// Serialization
@@ -58,7 +59,7 @@ namespace app4triqs {
    * Chain the decimal digits of two integers i and j, and return the result
    *
    * @param :math:`i` The first integer
-   * @param :math:`j` The second integer 
+   * @param :math:`j` The second integer
    * @return An integer containing the digits of both i and j
    *
    * @remark

doc/CMakeLists.txt

@@ -1,10 +1,9 @@
-# Generate the conf.py
+# Generate the sphinx config file
 configure_file(${CMAKE_CURRENT_SOURCE_DIR}/conf.py.in ${CMAKE_CURRENT_BINARY_DIR}/conf.py @ONLY)
 
 # ---------------------------------
 # Top Sphinx target
 # ---------------------------------
-# Sources
 file(GLOB_RECURSE sources *.rst)
 
 set(sphinx_top ${CMAKE_CURRENT_BINARY_DIR}/html/contents.html)
@@ -20,48 +19,45 @@ add_dependencies(docs_sphinx app4triqs_c)
 # cp_rs is a script in cpp2py/bin, it mimics cp -rs on Linux
 # and filters the relevant extension
 # ------------------------------------------------------------------------------------------------
-
 set(EXT_FOR_DOC "rst png txt css_t conf css js gif jpg py html bib")
 execute_process(COMMAND cp_rs ${CMAKE_CURRENT_SOURCE_DIR} ${CMAKE_CURRENT_BINARY_DIR} ${EXT_FOR_DOC})
 
 # ---------------------------------
 # Generate C++ doc with c++2rst
 # ---------------------------------
-
 add_custom_target(docs_cpp2rst)
 
 get_property(TRIQS_INCLUDE_DIRS TARGET triqs PROPERTY INTERFACE_INCLUDE_DIRECTORIES)
 get_property(APP4TRIQS_INCLUDE_DIRS TARGET app4triqs_c PROPERTY INTERFACE_INCLUDE_DIRECTORIES)
-
 set(CPP2RST_INCLUDE_DIRS ${TRIQS_INCLUDE_DIRS} ${APP4TRIQS_INCLUDE_DIRS})
+
 foreach(I ${CPP2RST_INCLUDE_DIRS})
   set (CPP2RST_INCLUDE_COMMAND ${CPP2RST_INCLUDE_COMMAND} --includes ${I})
 endforeach()
 
 macro(generate_docs header_file)
-  add_custom_command (TARGET docs_cpp2rst
+  add_custom_command(
-			COMMAND c++2rst
+    TARGET docs_cpp2rst
-			${header_file}
+    COMMAND c++2rst
-			-N app4triqs
+    ${header_file}
-			--output_directory ${CMAKE_CURRENT_BINARY_DIR}/cpp2rst_generated
+    -N app4triqs
-			${CPP2RST_INCLUDE_COMMAND}
+    --output_directory ${CMAKE_CURRENT_BINARY_DIR}/cpp2rst_generated
-			--cxxflags="-std=c++17"
+    ${CPP2RST_INCLUDE_COMMAND}
-			-I ${CMAKE_SOURCE_DIR}/c++
+    --cxxflags="-std=c++17"
-			-I ${TRIQS_ROOT}/include
+    -I ${CMAKE_SOURCE_DIR}/c++
-			2>&1 >> cpp2rst.log
+    -I ${TRIQS_ROOT}/include
-		      )
+    2>&1 >> cpp2rst.log
+  )
 endmacro(generate_docs)
 
 generate_docs(${CMAKE_SOURCE_DIR}/c++/app4triqs/toto.hpp)
-
 add_dependencies(docs_sphinx docs_cpp2rst)
 
 # ---------------------------------
 # Install
 # ---------------------------------
 install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/html/ COMPONENT documentation DESTINATION share/doc/app4triqs
- FILES_MATCHING
+  FILES_MATCHING
- REGEX "\\.(html|pdf|png|gif|jpg|js|xsl|css|py|txt|inv|bib)$"
+  REGEX "\\.(html|pdf|png|gif|jpg|js|xsl|css|py|txt|inv|bib)$"
- PATTERN "_*"
+  PATTERN "_*"
- )
+)
-

python/app4triqs/CMakeLists.txt

@@ -12,7 +12,7 @@ configure_file(version.py.in version.py)
 # All Python files. Copy them in the build dir to have a complete package for the tests.
 set(PYTHON_SOURCES __init__.py)
 foreach(f ${PYTHON_SOURCES})
- configure_file(${f} ${f} COPYONLY)
+  configure_file(${f} ${f} COPYONLY)
 endforeach()
 
 # Install python module to proper location

share/CMakeLists.txt

@@ -2,22 +2,22 @@ add_subdirectory(cmake)
 
 if(NOT CMAKE_INSTALL_PREFIX STREQUAL TRIQS_ROOT)
 
- configure_file(app4triqs.modulefile.in app4triqs.modulefile @ONLY)
+  configure_file(app4triqs.modulefile.in app4triqs.modulefile @ONLY)
- configure_file(app4triqsvars.sh.in app4triqsvars.sh @ONLY)
+  configure_file(app4triqsvars.sh.in app4triqsvars.sh @ONLY)
 
- install(
+  install(
-  FILES
+    FILES
-   ${CMAKE_CURRENT_BINARY_DIR}/app4triqs.modulefile
+      ${CMAKE_CURRENT_BINARY_DIR}/app4triqs.modulefile
-   ${CMAKE_CURRENT_BINARY_DIR}/app4triqsvars.sh
+      ${CMAKE_CURRENT_BINARY_DIR}/app4triqsvars.sh
-  DESTINATION share
+    DESTINATION share
- )
+  )
  
- message(STATUS "***************************************************************")
+  message(STATUS "***************************************************************")
- message(STATUS "* Custom install Location. Use: 			        ")
+  message(STATUS "* Custom install Location. Use: 			         ")
- message(STATUS "*                                                              ")
+  message(STATUS "*                                                              ")
- message(STATUS "*   source ${CMAKE_INSTALL_PREFIX}/share/app4triqsvars.sh      ")
+  message(STATUS "*   source ${CMAKE_INSTALL_PREFIX}/share/app4triqsvars.sh      ")
- message(STATUS "*                                                              ") 
+  message(STATUS "*                                                              ") 
- message(STATUS "* to set up the environment variables                          ") 
+  message(STATUS "* to set up the environment variables                          ") 
- message(STATUS "***************************************************************")
+  message(STATUS "***************************************************************")
 
 endif()

share/cmake/CMakeLists.txt

@@ -1,10 +1,10 @@
 configure_file(app4triqs-config.cmake.in app4triqs-config.cmake @ONLY)
 configure_file(app4triqs-config-version.cmake.in app4triqs-config-version.cmake @ONLY)
 install(
- FILES 
+  FILES
-  ${CMAKE_CURRENT_BINARY_DIR}/app4triqs-config.cmake
+    ${CMAKE_CURRENT_BINARY_DIR}/app4triqs-config.cmake
-  ${CMAKE_CURRENT_BINARY_DIR}/app4triqs-config-version.cmake
+    ${CMAKE_CURRENT_BINARY_DIR}/app4triqs-config-version.cmake
- DESTINATION share/cmake
+  DESTINATION share/cmake
 )
 
 install(EXPORT app4triqs-targets DESTINATION share/cmake)

share/cmake/Findlibasan_rt.cmake

@@ -0,0 +1,50 @@
+# Copyright Nils Wentzell 2018
+# Distributed under the GNU GENERAL PUBLIC LICENSE Version 3.0.
+# See accompanying file LICENSE or https://www.gnu.org/licenses/gpl-3.0.txt
+#
+# This cmake find module looks for the LLVM Address Sanitizer Runtime Library
+# It sets up : ASAN_RT_LIBRARY
+
+# This module finds the LLVM Address Sanitizer Runtime Library
+# latter case skip to the "Boost CMake" section below.  For the former
+#
+# Use this module by invoking find_package with the form::
+#
+#   find_package(libasan_rt [REQUIRED])
+#
+# Results are reported in::
+#
+#    ASAN_RT_LIBRARY 		Address Sanitizer Runtime Library 
+
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL "Clang")
+  set(name clang_rt.asan-x86_64)
+elseif(${CMAKE_CXX_COMPILER_ID} STREQUAL "GNU")
+  set(name asan)
+else()
+  message(FATAL_ERROR "LLVM Address Sanitizer is not available for your compiler")
+endif()
+
+find_library(ASAN_RT_LIBRARY
+  NAMES ${name}
+  PATHS
+    ENV LIBRARY_PATH
+    ENV LD_INCLUDE_PATH
+    /usr/lib 
+    /usr/local/lib
+    /usr/lib/gcc/*/*
+    /usr/lib/clang/*/lib/linux
+    /usr/lib/llvm-*/lib/clang/*/lib/linux
+    /usr/local/opt/llvm/lib/clang/*/lib/darwin
+)
+
+mark_as_advanced(ASAN_RT_LIBRARY)
+
+# Imported target
+add_library(libasan_rt SHARED IMPORTED)
+set_property(TARGET libasan_rt PROPERTY IMPORTED_LOCATION ${ASAN_RT_LIBRARY})
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args("Address Sanitizer Runtime Library"
+  REQUIRED_VARS ASAN_RT_LIBRARY
+  FAIL_MESSAGE "Address Sanitizer Runtime Libraries not found! Consider installing for additional checks!"
+)

share/cmake/Findlibubsan_rt.cmake

@@ -0,0 +1,50 @@
+# Copyright Nils Wentzell 2018
+# Distributed under the GNU GENERAL PUBLIC LICENSE Version 3.0.
+# See accompanying file LICENSE or https://www.gnu.org/licenses/gpl-3.0.txt
+#
+# This cmake find module looks for the LLVM Undefined Behavior Sanitizer Runtime Library
+# It sets up : UBSAN_RT_LIBRARY
+
+# This module finds the LLVM Undefined Behavior Sanitizer Runtime Library
+# latter case skip to the "Boost CMake" section below.  For the former
+#
+# Use this module by invoking find_package with the form::
+#
+#   find_package(libubsan_rt [REQUIRED])
+#
+# Results are reported in::
+#
+#    UBSAN_RT_LIBRARY 		Undefined Behavior Sanitizer Runtime Library 
+
+if(${CMAKE_CXX_COMPILER_ID} STREQUAL "Clang")
+  set(name clang_rt.ubsan_standalone-x86_64)
+elseif(${CMAKE_CXX_COMPILER_ID} STREQUAL "GNU")
+  set(name ubsan)
+else()
+  message(FATAL_ERROR "Undefined Behavior Sanitizer is not available for your compiler")
+endif()
+  
+find_library(UBSAN_RT_LIBRARY
+  NAMES ${name}
+  PATHS
+    ENV LIBRARY_PATH
+    ENV LD_INCLUDE_PATH
+    /usr/lib 
+    /usr/local/lib
+    /usr/lib/gcc/*/*
+    /usr/lib/clang/*/lib/linux
+    /usr/lib/llvm-*/lib/clang/*/lib/linux
+    /usr/local/opt/llvm/lib/clang/*/lib/darwin
+)
+
+mark_as_advanced(UBSAN_RT_LIBRARY)
+
+# Imported target
+add_library(libubsan_rt SHARED IMPORTED)
+set_property(TARGET libubsan_rt PROPERTY IMPORTED_LOCATION ${UBSAN_RT_LIBRARY})
+
+include(FindPackageHandleStandardArgs)
+find_package_handle_standard_args("Undefined Behavior Sanitizer Runtime Library"
+  REQUIRED_VARS UBSAN_RT_LIBRARY
+  FAIL_MESSAGE "Undefined Behavior Sanitizer Runtime Libraries not found! Consider installing for additional checks!"
+)

test/c++/CMakeLists.txt

@@ -8,4 +8,21 @@ foreach(t ${all_tests})
   add_executable(${t} ${CMAKE_CURRENT_SOURCE_DIR}/${t}.cpp)
   target_link_libraries(${t} app4triqs_c gtest)
   add_test(${t} ${CMAKE_CURRENT_BINARY_DIR}/${t})
+  # Run clang-tidy if found
+  #if(CLANG_TIDY_EXECUTABLE)
+    #set_target_properties(${t} PROPERTIES CXX_CLANG_TIDY "${CLANG_TIDY_EXECUTABLE}")
+  #endif()
+  ## Run cppcheck if found
+  #if(CPPCHECK_EXECUTABLE)
+    #add_custom_command(
+      #TARGET ${t}
+      #COMMAND ${CPPCHECK_EXECUTABLE}
+      #--enable=warning,style,performance,portability
+      #--std=c++14
+      #--template=gcc
+      #--verbose
+      #--quiet
+      #${CMAKE_CURRENT_SOURCE_DIR}/${t}.cpp
+    #)
+  #endif()
 endforeach()

test/python/CMakeLists.txt

@@ -9,4 +9,8 @@ foreach(t ${all_tests})
 endforeach()
 
 # Set the PythonPath : put the build dir first (in case there is an installed version).
-set_property(TEST ${all_tests} PROPERTY ENVIRONMENT PYTHONPATH=${CMAKE_BINARY_DIR}/python:$ENV{PYTHONPATH} )
+set_property(TEST ${all_tests} PROPERTY
+  ENVIRONMENT
+    PYTHONPATH=${CMAKE_BINARY_DIR}/python:$ENV{PYTHONPATH}
+    LD_PRELOAD=$<$<BOOL:${ASAN}>:${ASAN_RT_LIBRARY}>:$<$<BOOL:${UBSAN}>:${UBSAN_RT_LIBRARY}>
+)