Clean a bit CMakeFiles

modified:   cmake/BuildSphinx.cmake
  modified:   cmake/FindTestScriptHdf.cmake
  modified:   cmake/FindTriqsTest.cmake.in
  modified:   cmake/TRIQSConfig.cmake.in

cmake/BuildSphinx.cmake

@@ -23,7 +23,7 @@ endif (NOT SPHINXBUILD_EXECUTABLE)
 if (TRIQS_BUILD_STATIC)
   SET(SPHINXBUILD_EXECUTABLE PYTHONPATH=${CMAKE_BINARY_DIR}  ${CMAKE_BINARY_DIR}/bin/pytriqs ${SPHINXBUILD_EXECUTABLE})
 else (TRIQS_BUILD_STATIC)
-  SET(SPHINXBUILD_EXECUTABLE ${CMAKE_BINARY_DIR}/run_pytriqs_for_test.sh ${SPHINXBUILD_EXECUTABLE})
+  SET(SPHINXBUILD_EXECUTABLE ${CMAKE_BINARY_DIR}/build_pytriqs ${SPHINXBUILD_EXECUTABLE})
 endif (TRIQS_BUILD_STATIC)
 
 # handle the QUIETLY and REQUIRED arguments and set SPHINXBUILD_FOUND to TRUE if 

cmake/FindTestScriptHdf.cmake

@@ -1,5 +1,5 @@
 
-SET(RUN_TEST ${CMAKE_BINARY_DIR}/run_pytriqs_for_test.sh ) 
+SET(RUN_TEST ${CMAKE_BINARY_DIR}/build_pytriqs ) 
 #if (TRIQS_BUILD_STATIC)
 # FILE(WRITE ${RUN_TEST} "PYTHONPATH=${CMAKE_BINARY_DIR}:$PYTHONPATH  ${PYTHON_INTERPRETER} $1")
 # #FILE(WRITE ${RUN_TEST} "PYTHONPATH=${CMAKE_BINARY_DIR}:$PYTHONPATH  ${CMAKE_BINARY_DIR}/bin/pytriqs $1")

cmake/FindTriqsTest.cmake.in

@@ -43,19 +43,7 @@ macro(triqs_add_test_C_hdf testname h5diff_options)
    )
 endmacro(triqs_add_test_C_hdf)
 
-# WRITE THE run_pytriqs_for_test file
+SET(ExecutableNameForTest ${CMAKE_BINARY_DIR}/build_pytriqs)
-file (WRITE ${CMAKE_BINARY_DIR}/run_pytriqs_for_test.sh  "#!/bin/bash\n export PYTHONPATH=${CMAKE_BINARY_DIR}/python:$PYTHONPATH\n ${TRIQS_PATH}/bin/pytriqs  $@")
-execute_process(COMMAND chmod a+x ${CMAKE_BINARY_DIR}/run_pytriqs_for_test.sh)
-
-#SET(RUN_TEST @CMAKE_INSTALL_PREFIX@/bin/pytriqs)
-SET(RUN_TEST ${CMAKE_BINARY_DIR}/run_pytriqs_for_test.sh ) 
-#if (TRIQS_BUILD_STATIC)
-# FILE(WRITE ${RUN_TEST} "PYTHONPATH=${CMAKE_BINARY_DIR}:$PYTHONPATH  ${PYTHON_INTERPRETER} $1")
-# #FILE(WRITE ${RUN_TEST} "PYTHONPATH=${CMAKE_BINARY_DIR}:$PYTHONPATH  ${CMAKE_BINARY_DIR}/bin/pytriqs $1")
-# execute_process( COMMAND chmod u+x ${RUN_TEST} )
-#endif (TRIQS_BUILD_STATIC)
-
-SET(ExecutableNameForTest ${RUN_TEST})
  
 # runs pytriqs script > output 
 # and compares output with script.output

cmake/TRIQSConfig.cmake.in

@@ -34,6 +34,12 @@ set(TRIQS_HDF5_DIFF_EXECUTABLE @TRIQS_HDF5_DIFF_EXECUTABLE@)
 set(TRIQS_PYTHON_LIB_DEST @TRIQS_PYTHON_LIB_DEST@)
 set(TRIQS_COMPILER_IS_C11_COMPLIANT @TRIQS_COMPILER_IS_C11_COMPLIANT@)
 
+# Documentation
+set(TRIQS_WITH_DOCUMENTATION @Build_Documentation@)
+set(TRIQS_SPHINXBUILD_EXECUTABLE @SPHINXBUILD_EXECUTABLE@)
+set(TRIQS_THEMES_PATH @CMAKE_INSTALL_PREFIX@/share/triqs/themes)
+set(TRIQS_MATHJAX_PATH @MATHJAX_PATH@)
+
 # for people who want to quickly add everything TRIQS has detected...
 set(TRIQS_LIBRARY_ALL ${TRIQS_LIBRARY} ${TRIQS_LIBRARY_BOOST} ${TRIQS_LIBRARY_PYTHON} ${TRIQS_LIBRARY_MPI} ${TRIQS_LIBRARY_HDF5} ${TRIQS_LIBRARY_LAPACK} ${TRIQS_LIBRARY_FFTW} ${TRIQS_LIBRARY_GMP} ${TRIQS_LIBRARY_GSL} )
 set(TRIQS_INCLUDE_ALL ${TRIQS_INCLUDE} ${TRIQS_INCLUDE_BOOST} ${TRIQS_INCLUDE_PYTHON} ${TRIQS_INCLUDE_MPI} ${TRIQS_INCLUDE_HDF5} ${TRIQS_INCLUDE_LAPACK} ${TRIQS_INCLUDE_FFTW} ${TRIQS_INCLUDE_GMP} ${TRIQS_INCLUDE_GSL} )
@@ -108,17 +114,80 @@ if(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
  set(CMAKE_INSTALL_NAME_DIR "${CMAKE_INSTALL_PREFIX}/lib")
  set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE) 
 else()
- set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
+
  set(CMAKE_SKIP_BUILD_RPATH FALSE)
+ set(CMAKE_SKIP_INSTALL_RPATH FALSE)
  set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE) 
+ set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
  set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
+
 endif()
 endmacro()
 
 macro (triqs_add_rpath_to_triqs_install)
- link_libraries ( -Wl,-rpath,@CMAKE_INSTALL_PREFIX@/lib)
+ target_link_libraries (-Wl,-rpath,@CMAKE_INSTALL_PREFIX@/lib)
 endmacro()
 
+
+
+macro(triqs_set_rpath_options)
+if(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
+ set(CMAKE_INSTALL_NAME_DIR "${CMAKE_INSTALL_PREFIX}/lib")
+ set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE) 
+else()
+ set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
+endif()
+endmacro()
+
+macro (triqs_set_rpath_for_target Target)
+ set_target_properties(${Target} PROPERTIES LINK_FLAGS -Wl,-rpath,${CMAKE_INSTALL_PREFIX}/lib)
+endmacro()
+
+# A macro to create a local copy of triqs with the added python
+macro (triqs_prepare_local_pytriqs_merged_with_my_python python_destination)
+
+file(WRITE ${CMAKE_BINARY_DIR}/build_pytriqs
+"#!/bin/bash
+export PYTHONPATH=${CMAKE_BINARY_DIR}:$PYTHONPATH
+${TRIQS_PYTHON_INTERPRETER} $@"
+)
+execute_process(COMMAND chmod 755 ${CMAKE_BINARY_DIR}/build_pytriqs)
+
+execute_process(COMMAND ${CMAKE_COMMAND} -E chdir ${TRIQS_PATH}/${TRIQS_PYTHON_LIB_DEST}
+                        find . -type d -exec mkdir -p ${CMAKE_BINARY_DIR}/pytriqs/{} \;)
+execute_process(COMMAND ${CMAKE_COMMAND} -E chdir ${TRIQS_PATH}/${TRIQS_PYTHON_LIB_DEST}
+                        find . -type f -exec ln -snf ${TRIQS_PATH}/${TRIQS_PYTHON_LIB_DEST}/{} ${CMAKE_BINARY_DIR}/pytriqs/{} \;)
+execute_process(COMMAND ${CMAKE_COMMAND} -E chdir ${TRIQS_PATH}/${TRIQS_PYTHON_LIB_DEST}
+                        find . -type l -exec ln -snf ${TRIQS_PATH}/${TRIQS_PYTHON_LIB_DEST}/{} ${CMAKE_BINARY_DIR}/pytriqs/{} \;)
+
+# Create directories where python files will go and make sure there is an __init__.py all the way
+execute_process(COMMAND mkdir -p ${CMAKE_BINARY_DIR}/pytriqs/${python_destination})
+file(WRITE ${CMAKE_BINARY_DIR}/python/__init__.py  "__all__=[]")
+set(partial_dir ${python_destination})
+while(partial_dir MATCHES "/")
+  string(REGEX REPLACE "/[^/]*$" "" partial_dir ${partial_dir})
+  execute_process(COMMAND cp -n ${CMAKE_BINARY_DIR}/python/__init__.py ${CMAKE_BINARY_DIR}/pytriqs/${partial_dir})
+endwhile(partial_dir MATCHES "/")
+
+# Set a rule to have original python files copied to their destination if modified
+FILE(GLOB_RECURSE python_sources RELATIVE ${CMAKE_SOURCE_DIR}/python *.py)
+SET(py_copy_tar ${CMAKE_BINARY_DIR}/py_copy.tar)
+add_custom_command (OUTPUT ${py_copy_tar} DEPENDS ${python_sources}
+ COMMAND cd ${CMAKE_SOURCE_DIR}/python && tar cf ${py_copy_tar} ${python_sources} &&
+         cd ${CMAKE_BINARY_DIR}/pytriqs/${python_destination} && tar xf ${py_copy_tar})
+add_custom_target(py_copy ALL DEPENDS ${py_copy_tar})
+
+# Install putting the __init__.py file everywhere
+install (FILES ${python_sources} DESTINATION ${TRIQS_PYTHON_LIB_DEST}/${python_destination})
+set(partial_dir ${python_destination})
+while(partial_dir MATCHES "/")
+  string(REGEX REPLACE "/[^/]*$" "" partial_dir ${partial_dir})
+  install(FILES ${CMAKE_CURRENT_BINARY_DIR}/__init__.py DESTINATION ${TRIQS_PYTHON_LIB_DEST}/${partial_dir})
+endwhile(partial_dir MATCHES "/")
+
+endmacro()
+
+
 #
 # This macro builds the f2py module
 #   - target_name