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Removed obsolete files

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This commit is contained in:
Oleg E. Peil 2017-02-07 09:47:28 +01:00
parent 8378013faa
commit e24933d3fe
4 changed files with 0 additions and 318 deletions
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5
c++/plovasp/locproj_io/.gitignore vendored
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makefile
Makefile
*.so
*.o
*.pyc

2
c++/plovasp/locproj_io/__init__.py
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302
c++/plovasp/locproj_io/c_locproj_io.c
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/*
* C-module for fast reading of LOCPROJ file generated by VASP
*/
#include <Python.h>
#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
#include <numpy/arrayobject.h>
#include <complex.h>
#include <string.h>
#define MAX_STR_LEN 512
static int verbose = 0;
typedef struct {
int nion;
int ns;
int nk;
int nb;
int nlmmax;
int nc_flag;
int isdouble;
} t_params;
static PyObject* io_read_locproj(PyObject *self, PyObject *args);
PyObject* create_par_dictionary(t_params* p);
PyArrayObject* create_plo_array(t_params* p);
PyArrayObject* create_ferw_array(t_params* p);
int read_arrays(FILE* fh, t_params* p, PyArrayObject* py_plo);
// Python module descriptor
static PyMethodDef c_locproj_io[] = {
{"read_locproj", io_read_locproj, METH_VARARGS,
"Reads from LOCPROJ and returns projector functions"},
{NULL, NULL, 0, NULL}
};
PyMODINIT_FUNC
initc_locproj_io(void)
{
(void) Py_InitModule("c_locproj_io", c_locproj_io);
import_array();
}
/*
Main function.
Reads data from the specified file (default is 'LOCPROJ')
and returns it as a Python tuple.
*/
static PyObject *
io_read_locproj(PyObject *self, PyObject *args)
{
PyArrayObject *py_plo = NULL;
PyArrayObject *py_ferw = NULL;
PyObject *par_dict = NULL;
PyObject *ret_tuple = NULL;
char *fname = "LOCPROJ";
char errmsg[MAX_STR_LEN] = {"\0"};
FILE* fh;
int prec;
t_params params;
if(!PyArg_ParseTuple(args, "|s", &fname))
return NULL;
if(verbose)
printf(" Reading projector functions from file: %s\n", fname);
//
// Read the header
//
fh = fopen(fname, "rt");
if(fh == NULL) {
// Treat this error separately because no clean-up is necessary
snprintf(errmsg, MAX_STR_LEN, "Error opening %s\n%s", fname, strerror(errno));
PyErr_SetString(PyExc_IOError, errmsg);
return NULL;
}
// TODO: implement input of LOCPROJ
// if(!fread(&prec, 4, 1, fh)) goto ioerror;
// if(!fread(&params.nion, 4, 1, fh)) goto ioerror;
// if(!fread(&params.ns, 4, 1, fh)) goto ioerror;
// if(!fread(&params.nk, 4, 1, fh)) goto ioerror;
// if(!fread(&params.nb, 4, 1, fh)) goto ioerror;
// if(!fread(&params.nlmmax, 4, 1, fh)) goto ioerror;
// if(!fread(&params.nc_flag, 4, 1, fh)) goto ioerror;
//
// switch(prec) {
// case 8:
// params.isdouble = 1;
// if(verbose) printf(" Data in double precision\n");
// break;
// case 4:
// params.isdouble = 0;
// if(verbose) printf(" Data in single precision\n");
// break;
// default:
// PyErr_SetString(PyExc_ValueError,
// "Error reading PLOCAR: only 'prec = 4, 8' are supported");
// goto error;
// }
//
// if(verbose) {
// printf(" nion: %d\n", params.nion);
// printf(" ns: %d\n", params.ns);
// printf(" nk: %d\n", params.nk);
// printf(" nb: %d\n", params.nb);
// printf(" nlmmax: %d\n", params.nlmmax);
// printf(" nc_flag: %d\n", params.nc_flag);
// }
//
// Create parameter dictionary
//
par_dict = create_par_dictionary(&params);
//
// Create PLO and Fermi-weight arrays
//
py_plo = create_plo_array(&params);
py_ferw = create_ferw_array(&params);
//
// Read the data from file
//
if(read_arrays(fh, &params, py_plo, py_ferw)) goto ioerror;
//
// Create return tuple
//
ret_tuple = PyTuple_New(3);
if(PyTuple_SetItem(ret_tuple, 0, par_dict) < 0) {
PyErr_SetString(PyExc_ValueError,
"Error adding element to the return tuple (parameter dictionary)");
goto error;
}
if(PyTuple_SetItem(ret_tuple, 1, (PyObject *)py_plo) < 0) {
PyErr_SetString(PyExc_ValueError,
"Error adding element to the return tuple (PLO array)");
goto error;
}
if(PyTuple_SetItem(ret_tuple, 2, (PyObject *)py_ferw) < 0) {
PyErr_SetString(PyExc_ValueError,
"Error adding element to the return tuple (Fermi-weight array)");
goto error;
}
// Py_DECREF(par_dict);
fclose(fh);
return ret_tuple;
//
// Handle IO-errors
//
ioerror:
if(feof(fh)) {
snprintf(errmsg, MAX_STR_LEN, "End-of-file reading %s", fname);
PyErr_SetString(PyExc_IOError, errmsg);
}
else {
snprintf(errmsg, MAX_STR_LEN, "Error reading %s: %s", fname, strerror(errno));
PyErr_SetString(PyExc_IOError, errmsg);
}
//
// Clean-up after an error
//
error:
fclose(fh);
Py_XDECREF(par_dict);
Py_XDECREF(py_plo);
Py_XDECREF(py_ferw);
Py_XDECREF(ret_tuple);
return NULL;
}
//
// Auxiliary functions
//
PyObject*
create_par_dictionary(t_params* p)
{
PyObject *par_dict = PyDict_New();
PyDict_SetItemString(par_dict, "nion", PyInt_FromLong((long)p->nion));
PyDict_SetItemString(par_dict, "ns", PyInt_FromLong((long)p->ns));
PyDict_SetItemString(par_dict, "nk", PyInt_FromLong((long)p->nk));
PyDict_SetItemString(par_dict, "nb", PyInt_FromLong((long)p->nb));
PyDict_SetItemString(par_dict, "nc_flag", PyInt_FromLong((long)p->nc_flag));
return par_dict;
}
PyArrayObject*
create_plo_array(t_params* p)
{
double complex *plo;
npy_intp *dims;
int ntot = p->nion * p->ns * p->nk * p->nb * p->nlmmax;
int ndim = 5;
plo = (double complex*)malloc(ntot * sizeof(double complex));
memset(plo, 0, ntot * sizeof(double complex));
dims = (npy_intp *)malloc(ndim * sizeof(npy_intp));
dims[0] = p->nion;
dims[1] = p->ns;
dims[2] = p->nk;
dims[3] = p->nb;
dims[4] = p->nlmmax;
return (PyArrayObject *)PyArray_SimpleNewFromData(ndim, dims, NPY_CDOUBLE, plo);
}
PyArrayObject*
create_ferw_array(t_params* p)
{
double *ferw;
npy_intp *dims;
int ntot = p->nion * p->ns * p->nk * p->nb;
int ndim = 4;
ferw = (double *)malloc(ntot * sizeof(double));
memset(ferw, 0, ntot * sizeof(double));
dims = (npy_intp *)malloc(ndim * sizeof(npy_intp));
dims[0] = p->nion;
dims[1] = p->ns;
dims[2] = p->nk;
dims[3] = p->nb;
return (PyArrayObject *)PyArray_SimpleNewFromData(ndim, dims, NPY_DOUBLE, ferw);
}
int read_arrays(FILE* fh, t_params* p, PyArrayObject* py_plo, PyArrayObject* py_ferw)
{
double complex *plo;
double *ferw;
npy_intp idx5[5];
int ilm;
int nlm;
float rtmp;
float complex rbuf[50];
double dtmp;
double complex dbuf[50];
idx5[4] = 0;
for(idx5[0] = 0; idx5[0] < p->nion; idx5[0]++) {
if(fread(&nlm, 4, 1, fh) < 1) goto error;
// printf(" nlm = %d\n", nlm);
for(idx5[1] = 0; idx5[1] < p->ns; idx5[1]++)
for(idx5[2] = 0; idx5[2] < p->nk; idx5[2]++)
for(idx5[3] = 0; idx5[3] < p->nb; idx5[3]++) {
// Get the pointers to corresponding elements according to the new API
plo = (double complex *)PyArray_GetPtr(py_plo, idx5);
// Here, only the first 4 elements of idx5 are used
ferw = (double *)PyArray_GetPtr(py_ferw, idx5);
if(p->isdouble) {
if(fread(&dtmp, sizeof(double), 1, fh) < 1) goto error;
if(fread(dbuf, sizeof(double complex), nlm, fh) < nlm) goto error;
ferw[0] = dtmp;
// printf("%5d %5d %5d %5d %lf\n", ion, is, ik, ib, dtmp);
memcpy(plo, dbuf, nlm * sizeof(double complex));
}
else {
if(fread(&rtmp, sizeof(float), 1, fh) < 1) goto error;
if(fread(rbuf, sizeof(float complex), nlm, fh) < nlm) goto error;
ferw[0] = (double)rtmp;
// printf("%5d %5d %5d %5d %f\n", ion, is, ik, ib, rtmp);
// In this case destination and source arrays are not compatible,
// we have to copy element-wise
for(ilm = 0; ilm < nlm; ilm++) {
plo[ilm] = (double complex)rbuf[ilm];
// printf("%5d %5d %f\n", ilm, ind2 + ilm, rbuf[ilm]);
}
} // if p->isdouble
}
}
return 0;
error:
return -1;
}

9
c++/plovasp/locproj_io/setup.py.in
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from distutils.core import setup, Extension
import numpy
c_locproj_io_mod = Extension('c_locproj_io', sources=['c_locproj_io.c'],
include_dirs=[numpy.get_include()])
setup(ext_modules=[c_locproj_io_mod])