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mirror of https://github.com/triqs/dft_tools synced 2024-06-25 22:52:20 +02:00

renamed converters from app_converter.py to app.py

* adapted all occurences of the converter script file names including
  the doc files
* fixed one failing test: Py_basis_transformation.py
This commit is contained in:
Alexander Hampel 2020-06-23 11:13:00 +02:00
parent f27399758e
commit a1209f8a53
26 changed files with 42 additions and 42 deletions

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@ -1,4 +1,4 @@
from triqs_dft_tools.converters.wien2k_converter import Wien2kConverter
from triqs_dft_tools.converters.wien2k import Wien2kConverter
from triqs_dft_tools import SumkDFTTools
filename = 'Sr2RuO4'

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@ -128,7 +128,7 @@ Momentum resolved spectral function (with real-frequency self energy)
Another quantity of interest is the momentum-resolved spectral function, which can directly be compared to ARPES
experiments. First we have to execute `lapw1`, `lapw2 -almd` and :program:`dmftproj` with the `-band`
option and use the :meth:`convert_bands_input <dft.converters.wien2k_converter.Wien2kConverter.convert_bands_input>`
option and use the :meth:`convert_bands_input <dft.converters.wien2k.Wien2kConverter.convert_bands_input>`
routine, which converts the required files (for a more detailed description see :ref:`conversion`). The spectral function is then calculated by typing::
SK.spaghettis(broadening=0.01,plot_shift=0.0,plot_range=None,ishell=None,save_to_file='Akw_')

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@ -87,7 +87,7 @@ matrix of the imaginary part, and then move on to the next :math:`\mathbf{k}`-po
The converter itself is used as::
from triqs_dft_tools.converters.hk_converter import *
from triqs_dft_tools.converters.hk import *
Converter = HkConverter(filename = hkinputfile)
Converter.convert_dft_input()

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@ -183,7 +183,7 @@ Running the VASP converter
The actual conversion to a h5-file is performed with the orthonormalized projector functions readable by the :ref:`VaspConverter<refVASPconverter>` in the same fashion as with the other `DFTTools` converters::
from triqs_dft_tools.converters.vasp_converter import *
from triqs_dft_tools.converters.vasp import *
Converter = VaspConverter(filename = 'vasp')
Converter.convert_dft_input()

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@ -94,9 +94,9 @@ directory name):
Now we convert these files into an hdf5 file that can be used for the
DMFT calculations. For this purpose we
use the python module :class:`Wien2kConverter <dft.converters.wien2k_converter.Wien2kConverter>`. It is initialized as::
use the python module :class:`Wien2kConverter <dft.converters.wien2k.Wien2kConverter>`. It is initialized as::
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
Converter = Wien2kConverter(filename = case)
The only necessary parameter to this construction is the parameter `filename`.

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@ -52,13 +52,13 @@ real-frequency self energy.
it is crucial to perform the analytic continuation in such a way that the real-frequency self energy
is accurate around the Fermi energy as low-energy features strongly influence the final results.
Besides the self energy the Wien2k files read by the transport converter (:meth:`convert_transport_input <dft.converters.wien2k_converter.Wien2kConverter.convert_transport_input>`) are:
Besides the self energy the Wien2k files read by the transport converter (:meth:`convert_transport_input <dft.converters.wien2k.Wien2kConverter.convert_transport_input>`) are:
* :file:`.struct`: The lattice constants specified in the struct file are used to calculate the unit cell volume.
* :file:`.outputs`: In this file the k-point symmetries are given.
* :file:`.oubwin`: Contains the indices of the bands within the projected subspace (written by :program:`dmftproj`) for each k-point.
* :file:`.pmat`: This file is the output of the Wien2k optics package and contains the velocity (momentum) matrix elements between all bands in the desired energy
window for each k-point. How to use the optics package is described below.
* :file:`.h5`: The hdf5 archive has to be present and should contain the dft_input subgroup. Otherwise :meth:`convert_dft_input <dft.converters.wien2k_converter.Wien2kConverter.convert_dft_input>` needs to be called before :meth:`convert_transport_input <dft.converters.wien2k_converter.Wien2kConverter.convert_transport_input>`.
* :file:`.h5`: The hdf5 archive has to be present and should contain the dft_input subgroup. Otherwise :meth:`convert_dft_input <dft.converters.wien2k.Wien2kConverter.convert_dft_input>` needs to be called before :meth:`convert_transport_input <dft.converters.wien2k.Wien2kConverter.convert_transport_input>`.
Wien2k optics package
@ -84,7 +84,7 @@ Using the transport code
First we have to read the Wien2k files and store the relevant information in the hdf5 archive::
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
from triqs_dft_tools.sumk_dft_tools import *
Converter = Wien2kConverter(filename='case', repacking=True)
@ -92,7 +92,7 @@ First we have to read the Wien2k files and store the relevant information in the
SK = SumkDFTTools(hdf_file='case.h5', use_dft_blocks=True)
The converter :meth:`convert_transport_input <dft.converters.wien2k_converter.Wien2kConverter.convert_transport_input>`
The converter :meth:`convert_transport_input <dft.converters.wien2k.Wien2kConverter.convert_transport_input>`
reads the required data of the Wien2k output and stores it in the `dft_transp_input` subgroup of your hdf file.
Additionally we need to read and set the self energy, the chemical potential and the double counting::

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@ -5,20 +5,20 @@ Converters
Wien2k Converter
----------------
.. autoclass:: triqs_dft_tools.converters.wien2k_converter.Wien2kConverter
.. autoclass:: triqs_dft_tools.converters.wien2k.Wien2kConverter
:members:
:special-members:
:show-inheritance:
H(k) Converter
--------------
.. autoclass:: triqs_dft_tools.converters.hk_converter.HkConverter
.. autoclass:: triqs_dft_tools.converters.hk.HkConverter
:members:
:special-members:
Wannier90 Converter
-------------------
.. autoclass:: triqs_dft_tools.converters.wannier90_converter.Wannier90Converter
.. autoclass:: triqs_dft_tools.converters.wannier90.Wannier90Converter
:members:
:special-members:
@ -53,7 +53,7 @@ PLOVASP reference, the classes / functions are sorted the way the converter uses
VASP Converter
-------------------
.. _refVASPconverter:
.. autoclass:: triqs_dft_tools.converters.vasp_converter.VaspConverter
.. autoclass:: triqs_dft_tools.converters.vasp.VaspConverter
:members:
:special-members:

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@ -1,5 +1,5 @@
from triqs_dft_tools.sumk_dft import *
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
from triqs.applications.impurity_solvers.hubbard_I.hubbard_solver import Solver
import os

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@ -1,5 +1,5 @@
from triqs_dft_tools.sumk_dft_tools import *
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
from triqs.applications.impurity_solvers.hubbard_I.hubbard_solver import Solver
# Creates the data directory, cd into it:

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@ -8,7 +8,7 @@ from triqs_cthyb import *
import triqs.utility.mpi as mpi
# Convert the input
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
Converter = Wien2kConverter(filename = "Sr2MgOsO6_noSOC")
Converter.convert_dft_input()

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@ -1,3 +1,3 @@
from triqs_dft_tools.converters.vasp_converter import *
from triqs_dft_tools.converters.vasp import *
Converter = VaspConverter(filename = 'nio')
Converter.convert_dft_input()

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@ -4,7 +4,7 @@ from h5 import HDFArchive
from triqs_cthyb import *
from triqs.gf import *
from triqs_dft_tools.sumk_dft import *
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
dft_filename='SrVO3'
beta = 40
@ -49,7 +49,7 @@ p["fit_min_n"] = 30
p["fit_max_n"] = 60
# If conversion step was not done, we could do it here. Uncomment the lines it you want to do this.
#from triqs_dft_tools.converters.wien2k_converter import *
#from triqs_dft_tools.converters.wien2k import *
#Converter = Wien2kConverter(filename=dft_filename, repacking=True)
#Converter.convert_dft_input()
#mpi.barrier()

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@ -11,7 +11,7 @@ from triqs.operators.util.U_matrix import *
from triqs_cthyb import *
import triqs_cthyb.version as cthyb_version
import triqs_dft_tools.version as dft_tools_version
from triqs_dft_tools.converters.vasp_converter import *
from triqs_dft_tools.converters.vasp import *
import warnings

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@ -57,9 +57,9 @@ At the end of the run you see the density matrix in Wannier space:
As you can see, there are off-diagonal elements between the :math:`d_{x^2-y^2}` and the :math:`d_{xy}` orbital.
We convert the output to the hdf5 archive, using
the python module :class:`Wien2kConverter <dft.converters.wien2k_converter.Wien2kConverter>`. A simple python script doing this is::
the python module :class:`Wien2kConverter <dft.converters.wien2k.Wien2kConverter>`. A simple python script doing this is::
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
Converter = Wien2kConverter(filename = "Sr2MgOsO6_noSOC")
Converter.convert_dft_input()

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@ -58,9 +58,9 @@ At the end of the run you see the density matrix in Wannier space:
As you can see, there are a lot of off-diagonal elements now, in particular also off-diagonal in spin space. This is just telling us that spin is not a good quantum number any more in the presence of SOC.
We convert the output to the hdf5 archive, using
the python module :class:`Wien2kConverter <dft.converters.wien2k_converter.Wien2kConverter>`. A simple python script doing this is::
the python module :class:`Wien2kConverter <dft.converters.wien2k.Wien2kConverter>`. A simple python script doing this is::
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
Converter = Wien2kConverter(filename = "Sr2MgOsO6_SOC")
Converter.convert_dft_input()

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@ -51,10 +51,10 @@ Then :program:`dmftproj` is executed in its default mode (i.e. without spin-pola
dmftproj
This program produces the necessary files for the conversion to the hdf5 file structure. This is done using
the python module :class:`Wien2kConverter <dft.converters.wien2k_converter.Wien2kConverter>`.
the python module :class:`Wien2kConverter <dft.converters.wien2k.Wien2kConverter>`.
A simple python script that initialises the converter is::
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
Converter = Wien2kConverter(filename = "SrVO3")
After initializing the interface module, we can now convert the input

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@ -247,7 +247,7 @@
],
"source": [
"# import VASPconverter\n",
"from triqs_dft_tools.converters.vasp_converter import *\n",
"from triqs_dft_tools.converters.vasp import *\n",
"\n",
"\n",
"# create Converter\n",

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@ -20,10 +20,10 @@
#
##########################################################################
from .wien2k_converter import Wien2kConverter
from .hk_converter import HkConverter
from .vasp_converter import VaspConverter
from .wannier90_converter import Wannier90Converter
from .wien2k import Wien2kConverter
from .hk import HkConverter
from .vasp import VaspConverter
from .wannier90 import Wannier90Converter
__all__ =['Wien2kConverter','HkConverter','Wannier90Converter','VaspConverter']

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@ -251,7 +251,7 @@ class Wien2kConverter(ConverterTools):
for it in things_to_set:
setattr(self, it, locals()[it])
except StopIteration: # a more explicit error if the file is corrupted.
raise IOError("Wien2k_converter : reading file %s failed!" % self.dft_file)
raise IOError("wien2k : reading file %s failed!" % self.dft_file)
R.close()
# Reading done!
@ -472,7 +472,7 @@ class Wien2kConverter(ConverterTools):
except KeyError:
raise IOError("convert_bands_input : Needed data not found in hdf file. Consider calling convert_dft_input first!")
except StopIteration: # a more explicit error if the file is corrupted.
raise IOError("Wien2k_converter : reading file %s failed!" % self.band_file)
raise IOError("wien2k : reading file %s failed!" % self.band_file)
# Reading done!
@ -496,7 +496,7 @@ class Wien2kConverter(ConverterTools):
- symmetries from :file:`case.outputs`,
if those Wien2k files are present and stores the data in the hdf5 archive.
This function is automatically called by :meth:`convert_dft_input <triqs_dft_tools.converters.wien2k_converter.Wien2kConverter.convert_dft_input>`.
This function is automatically called by :meth:`convert_dft_input <triqs_dft_tools.converters.wien2k.Wien2kConverter.convert_dft_input>`.
"""
@ -779,7 +779,7 @@ class Wien2kConverter(ConverterTools):
next(R) # imaginary part
except StopIteration: # a more explicit error if the file is corrupted.
raise IOError("Wien2k_converter : reading file %s failed!" %symm_file)
raise IOError("wien2k : reading file %s failed!" %symm_file)
R.close()
# Reading done!

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@ -17,7 +17,7 @@ def call_diagonalize(SK):
SK.block_structure.transformation = None
return t_sumk_eal, t_solver_eal, t_sumk_dm, t_solver_dm
SK = SumkDFT(hdf_file = 'SrVO3.h5', use_dft_blocks=True)
SK = SumkDFT(hdf_file = 'SrVO3.ref.h5', use_dft_blocks=True)
# only eal and dm are allowed
SK.block_structure.transformation = None
@ -71,7 +71,7 @@ for dmi in dm:
# Test convert_operator
SK = SumkDFT(hdf_file = 'SrVO3.h5', use_dft_blocks=True)
SK = SumkDFT(hdf_file = 'SrVO3.ref.h5', use_dft_blocks=True)
BS = SK.block_structure
from triqs.operators.util import h_int_slater, U_matrix, t2g_submatrix, transform_U_matrix
@ -93,7 +93,7 @@ H3 = BS.convert_operator(h_int_slater(spin_names=['up','down'], orb_names=[0,1,2
for op in H3:
for c_op in op[0]:
assert(BS.gf_struct_solver_dict[0][c_op[1][0]][c_op[1][1]] is not None) # This crashes with a key error if the operator structure is not the solver structure
U_trafod = transform_U_matrix(U3x3, BS.transformation[0]['up'].conjugate()) # The notorious .conjugate()
H4 = h_int_slater(spin_names=['up','down'], orb_names=range(3), U_matrix=U_trafod, map_operator_structure=BS.sumk_to_solver[0])
assert( H4 == H3 ) # check that convert_operator does the same as transform_U_matrix

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@ -22,7 +22,7 @@
from h5 import *
from triqs.gf import *
from triqs_dft_tools.sumk_dft import *
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
from triqs.operators.util import set_operator_structure
from triqs.utility.comparison_tests import *
from triqs.utility.h5diff import h5diff

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@ -20,7 +20,7 @@
################################################################################
from numpy import *
from triqs_dft_tools.converters.wien2k_converter import *
from triqs_dft_tools.converters.wien2k import *
from triqs_dft_tools.sumk_dft import *
from triqs_dft_tools.sumk_dft_tools import *
from triqs.utility.comparison_tests import *

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@ -2,7 +2,7 @@ import unittest
import numpy as np
import sys
sys.path.insert(1, '../python/converters/')
from triqs_dft_tools.converters.wannier90_converter import Wannier90Converter
from triqs_dft_tools.converters.wannier90 import Wannier90Converter
from triqs_dft_tools import SumkDFT
class test_w90_conv(unittest.TestCase):