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Modify HDFArchive calls to 'r' where possible to handle corrupt files

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Priyanka Seth 2015-04-27 13:12:28 +02:00
parent b2c3d6ddf6
commit 79b4b426a8
4 changed files with 6 additions and 6 deletions
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4
python/converters/wien2k_converter.py
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@ -512,7 +512,7 @@ class Wien2kConverter(ConverterTools):
raise "convert_misc_input: reading file %s failed" %self.outputs_file raise "convert_misc_input: reading file %s failed" %self.outputs_file
# Save it to the HDF: # Save it to the HDF:
ar=HDFArchive(self.hdf_file,'a') ar = HDFArchive(self.hdf_file,'a')
if not (self.misc_subgrp in ar): ar.create_group(self.misc_subgrp) if not (self.misc_subgrp in ar): ar.create_group(self.misc_subgrp)
for it in things_to_save: ar[self.misc_subgrp][it] = locals()[it] for it in things_to_save: ar[self.misc_subgrp][it] = locals()[it]
del ar del ar
@ -660,7 +660,7 @@ class Wien2kConverter(ConverterTools):
# Reading done! # Reading done!
# Save it to the HDF: # Save it to the HDF:
ar=HDFArchive(self.hdf_file,'a') ar = HDFArchive(self.hdf_file,'a')
if not (symm_subgrp in ar): ar.create_group(symm_subgrp) if not (symm_subgrp in ar): ar.create_group(symm_subgrp)
things_to_save = ['n_symm','n_atoms','perm','orbits','SO','SP','time_inv','mat','mat_tinv'] things_to_save = ['n_symm','n_atoms','perm','orbits','SO','SP','time_inv','mat','mat_tinv']
for it in things_to_save: ar[symm_subgrp][it] = locals()[it] for it in things_to_save: ar[symm_subgrp][it] = locals()[it]

4
python/sumk_dft.py
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@ -160,7 +160,7 @@ class SumkDFT:
subgroup_present = 0 subgroup_present = 0
if mpi.is_master_node(): if mpi.is_master_node():
ar = HDFArchive(self.hdf_file,'a') ar = HDFArchive(self.hdf_file,'r')
if subgrp in ar: if subgrp in ar:
subgroup_present = True subgroup_present = True
# first read the necessary things: # first read the necessary things:
@ -225,7 +225,7 @@ class SumkDFT:
""" """
if not (mpi.is_master_node()): return # do nothing on nodes if not (mpi.is_master_node()): return # do nothing on nodes
ar = HDFArchive(self.hdf_file,'a') ar = HDFArchive(self.hdf_file,'r')
if not subgrp in ar: mpi.report("Loading %s failed!"%subgrp) if not subgrp in ar: mpi.report("Loading %s failed!"%subgrp)
list_to_return = [] list_to_return = []
for it in things_to_load: for it in things_to_load:

2
python/sumk_dft_tools.py
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@ -598,7 +598,7 @@ class SumkDFTTools(SumkDFT):
# Check if wien converter was called and read transport subgroup form hdf file # Check if wien converter was called and read transport subgroup form hdf file
if mpi.is_master_node(): if mpi.is_master_node():
ar = HDFArchive(self.hdf_file, 'a') ar = HDFArchive(self.hdf_file, 'r')
if not (self.transp_data in ar): raise IOError, "transport_distribution: No %s subgroup in hdf file found! Call convert_transp_input first." %self.transp_data if not (self.transp_data in ar): raise IOError, "transport_distribution: No %s subgroup in hdf file found! Call convert_transp_input first." %self.transp_data
self.read_transport_input_from_hdf() self.read_transport_input_from_hdf()

2
python/symmetry.py
View File

@ -53,7 +53,7 @@ class Symmetry:
if mpi.is_master_node(): if mpi.is_master_node():
#Read the stuff on master: #Read the stuff on master:
ar = HDFArchive(hdf_file,'a') ar = HDFArchive(hdf_file,'r')
if subgroup is None: if subgroup is None:
ar2 = ar ar2 = ar
else: else: