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Squash app4triqs/3.3.x to reduce skeleton history when tracking

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Co-authored-by: Dylan Simon <dylan@dylex.net>
Co-authored-by: Alexander Hampel <ahampel@flatironinstitute.org>
This commit is contained in:
Nils Wentzell 2022-02-17 16:58:35 -05:00
commit 79789512bf
89 changed files with 3948 additions and 0 deletions
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BasedOnStyle: LLVM
AccessModifierOffset: 0
AlignAfterOpenBracket: Align
AlignConsecutiveAssignments: true
AlignConsecutiveDeclarations: false
AlignEscapedNewlinesLeft: false
AlignOperands: false
AlignTrailingComments: true
AllowAllParametersOfDeclarationOnNextLine: false
AllowShortBlocksOnASingleLine: true
AllowShortCaseLabelsOnASingleLine: true
AllowShortFunctionsOnASingleLine: All
AllowShortIfStatementsOnASingleLine: true
AllowShortLoopsOnASingleLine: true
AlwaysBreakBeforeMultilineStrings: true
AlwaysBreakTemplateDeclarations: false
BinPackArguments: true
BinPackParameters: true
BreakBeforeBinaryOperators: NonAssignment
BreakBeforeBraces: Attach
BreakBeforeTernaryOperators: false
BreakConstructorInitializersBeforeComma: false
BreakStringLiterals: false
ColumnLimit: 150
ConstructorInitializerAllOnOneLineOrOnePerLine: true
ConstructorInitializerIndentWidth: 3
ContinuationIndentWidth: 3
Cpp11BracedListStyle: true
DerivePointerBinding : false
IndentCaseLabels: true
IndentWidth: 2
Language: Cpp
MaxEmptyLinesToKeep: 1
NamespaceIndentation : All
PointerAlignment: Right
ReflowComments: false
SortIncludes: false
SpaceAfterControlStatementKeyword: true
SpaceBeforeAssignmentOperators: true
SpaceInEmptyParentheses: false
SpacesInParentheses: false
Standard: Cpp11
TabWidth: 2
UseTab: Never

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Checks: '-*,modernize-*,cppcoreguidelines-*,bugprone-*,-modernize-use-trailing-return-type,-cppcoreguidelines-special-member-functions,-cppcoreguidelines-macro-usage,-cppcoreguidelines-no-malloc,-cppcoreguidelines-pro-bounds-pointer-arithmetic,-cppcoreguidelines-pro-bounds-constant-array-index,-cppcoreguidelines-avoid-magic-numbers, -cppcoreguidelines-non-private-member-variables-in-classes, -bugprone-easily-swappable-parameters'
HeaderFilterRegex: 'app4triqs'

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.travis.yml
Dockerfile
Jenkinsfile
.git/objects/pack
build*

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---
name: Bug report
about: Create a report to help us improve
title: Bug report
labels: bug
---
### Prerequisites
* Please check that a similar issue isn't already filed: https://github.com/issues?q=is%3Aissue+user%3Atriqs
### Description
[Description of the issue]
### Steps to Reproduce
1. [First Step]
2. [Second Step]
3. [and so on...]
or paste a minimal code example to reproduce the issue.
**Expected behavior:** [What you expect to happen]
**Actual behavior:** [What actually happens]
### Versions
Please provide the application version that you used.
You can get this information from copy and pasting the output of
```bash
python -c "from app4triqs.version import *; show_version(); show_git_hash();"
```
from the command line. Also, please include the OS you are running and its version.
### Formatting
Please use markdown in your issue message. A useful summary of commands can be found [here](https://guides.github.com/pdfs/markdown-cheatsheet-online.pdf).
### Additional Information
Any additional information, configuration or data that might be necessary to reproduce the issue.

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---
name: Feature request
about: Suggest an idea for this project
title: Feature request
labels: feature
---
### Summary
One paragraph explanation of the feature.
### Motivation
Why is this feature of general interest?
### Implementation
What user interface do you suggest?
### Formatting
Please use markdown in your issue message. A useful summary of commands can be found [here](https://guides.github.com/pdfs/markdown-cheatsheet-online.pdf).

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name: build
on:
push:
branches: [ unstable, '[0-9]+.[0-9]+.x' ]
pull_request:
branches: [ unstable, '[0-9]+.[0-9]+.x' ]
workflow_call:
workflow_dispatch:
env:
CMAKE_C_COMPILER_LAUNCHER: ccache
CMAKE_CXX_COMPILER_LAUNCHER: ccache
CCACHE_COMPILERCHECK: content
CCACHE_BASEDIR: ${{ github.workspace }}
CCACHE_DIR: ${{ github.workspace }}/.ccache
CCACHE_MAXSIZE: 500M
CCACHE_SLOPPINESS: pch_defines,time_macros,include_file_mtime,include_file_ctime
CCACHE_COMPRESS: "1"
CCACHE_COMPRESSLEVEL: "1"
jobs:
build:
strategy:
fail-fast: false
matrix:
include:
- {os: ubuntu-22.04, cc: gcc-12, cxx: g++-12}
- {os: ubuntu-22.04, cc: clang-15, cxx: clang++-15}
- {os: macos-12, cc: gcc-12, cxx: g++-12}
- {os: macos-12, cc: clang, cxx: clang++}
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: actions/cache/restore@v4
with:
path: ${{ env.CCACHE_DIR }}
key: ccache-${{ matrix.os }}-${{ matrix.cc }}-${{ github.run_id }}
restore-keys:
ccache-${{ matrix.os }}-${{ matrix.cc }}-
- name: Install ubuntu dependencies
if: matrix.os == 'ubuntu-22.04'
run: >
sudo apt-get update &&
sudo apt-get install lsb-release wget software-properties-common &&
wget -O /tmp/llvm.sh https://apt.llvm.org/llvm.sh && sudo chmod +x /tmp/llvm.sh && sudo /tmp/llvm.sh 15 &&
sudo apt-get install
ccache
clang-15
g++-12
gfortran
hdf5-tools
libblas-dev
libboost-dev
libclang-15-dev
libc++-15-dev
libc++abi-15-dev
libomp-15-dev
libfftw3-dev
libgfortran5
libgmp-dev
libhdf5-dev
liblapack-dev
libopenmpi-dev
openmpi-bin
openmpi-common
openmpi-doc
python3-clang-15
python3-dev
python3-mako
python3-matplotlib
python3-mpi4py
python3-numpy
python3-pip
python3-scipy
python3-sphinx
python3-nbsphinx
- name: Install homebrew dependencies
if: matrix.os == 'macos-12'
run: |
brew install ccache gcc@12 llvm boost fftw hdf5 open-mpi openblas
mkdir $HOME/.venv
python3 -m venv $HOME/.venv/my_python
source $HOME/.venv/my_python/bin/activate
pip install mako numpy scipy mpi4py
pip install -r requirements.txt
echo "VIRTUAL_ENV=$VIRTUAL_ENV" >> $GITHUB_ENV
echo "PATH=$PATH" >> $GITHUB_ENV
- name: add clang cxxflags
if: ${{ contains(matrix.cxx, 'clang') }}
run: |
echo "PATH=/usr/local/opt/llvm/bin:$PATH" >> $GITHUB_ENV
echo "CXXFLAGS=-stdlib=libc++" >> $GITHUB_ENV
- name: Build & Install TRIQS
env:
CC: ${{ matrix.cc }}
CXX: ${{ matrix.cxx }}
run: |
git clone https://github.com/TRIQS/triqs --branch unstable
mkdir triqs/build && cd triqs/build
cmake .. -DBuild_Tests=OFF -DCMAKE_INSTALL_PREFIX=$HOME/install
make -j1 install VERBOSE=1
cd ../
- name: Build app4triqs
env:
CC: ${{ matrix.cc }}
CXX: ${{ matrix.cxx }}
LIBRARY_PATH: /usr/local/opt/llvm/lib
run: |
source $HOME/install/share/triqs/triqsvars.sh
mkdir build && cd build && cmake ..
make -j2 || make -j1 VERBOSE=1
- name: Test app4triqs
env:
DYLD_FALLBACK_LIBRARY_PATH: /usr/local/opt/llvm/lib
OPENBLAS_NUM_THREADS: "1"
run: |
source $HOME/install/share/triqs/triqsvars.sh
cd build
ctest -j2 --output-on-failure
- name: ccache statistics
if: always()
run: ccache -sv
- uses: actions/cache/save@v4
if: always()
with:
path: ${{ env.CCACHE_DIR }}
key: ccache-${{ matrix.os }}-${{ matrix.cc }}-${{ github.run_id }}

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compile_commands.json
doc/_autosummary
doc/cpp2rst_generated

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# ##############################################################################
#
# app4triqs - An example application using triqs and cpp2py
#
# Copyright (C) ...
#
# app4triqs is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
# Foundation, either version 3 of the License, or (at your option) any later
# version.
#
# app4triqs is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along with
# app4triqs (in the file COPYING.txt in this directory). If not, see
# <http://www.gnu.org/licenses/>.
#
# ##############################################################################
cmake_minimum_required(VERSION 3.20 FATAL_ERROR)
cmake_policy(VERSION 3.20)
if(POLICY CMP0144)
cmake_policy(SET CMP0144 NEW)
endif()
# ############
# Define Project
project(app4triqs VERSION 3.3.0 LANGUAGES CXX)
get_directory_property(IS_SUBPROJECT PARENT_DIRECTORY)
# ############
# Load TRIQS and CPP2PY
find_package(TRIQS 3.3 REQUIRED)
# Get the git hash & print status
triqs_get_git_hash_of_source_dir(PROJECT_GIT_HASH)
message(STATUS "${PROJECT_NAME} version : ${PROJECT_VERSION}")
message(STATUS "${PROJECT_NAME} Git hash: ${PROJECT_GIT_HASH}")
# Enforce Consistent Versioning
if(NOT ${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR} VERSION_EQUAL ${TRIQS_VERSION_MAJOR}.${TRIQS_VERSION_MINOR})
message(FATAL_ERROR "The ${PROJECT_NAME} version ${PROJECT_VERSION} is not compatible with TRIQS version ${TRIQS_VERSION}.")
endif()
# Default Install directory to TRIQS_ROOT if not given or when provided as relative path.
if(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT OR (NOT IS_ABSOLUTE ${CMAKE_INSTALL_PREFIX}))
message(STATUS "No install prefix given (or invalid). Defaulting to TRIQS_ROOT")
set(CMAKE_INSTALL_PREFIX ${TRIQS_ROOT} CACHE PATH "default install path" FORCE)
set(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT FALSE)
endif()
if(NOT IS_SUBPROJECT)
message(STATUS "-------- CMAKE_INSTALL_PREFIX: ${CMAKE_INSTALL_PREFIX} --------")
endif()
set(${PROJECT_NAME}_BINARY_DIR ${PROJECT_BINARY_DIR} CACHE STRING "Binary directory of the ${PROJECT_NAME} Project")
# Make additional Find Modules available
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/share/cmake/Modules)
# ############
# CMake Options
# Default to Release build type
if(NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE Release CACHE STRING "Type of build" FORCE)
endif()
if(NOT IS_SUBPROJECT)
message(STATUS "-------- BUILD-TYPE: ${CMAKE_BUILD_TYPE} --------")
endif()
# Python Support
option(PythonSupport "Build with Python support" ON)
if(PythonSupport AND NOT TRIQS_WITH_PYTHON_SUPPORT)
message(FATAL_ERROR "TRIQS was installed without Python support. Cannot build the Python Interface. Disable the build with -DPythonSupport=OFF")
endif()
# Documentation
option(Build_Documentation "Build documentation" OFF)
if(NOT IS_SUBPROJECT AND (Build_Documentation AND NOT PythonSupport))
message(FATAL_ERROR "Build_Documentation=ON requires PythonSupport to be enabled")
endif()
# Testing
option(Build_Tests "Build tests" ON)
if(Build_Tests)
enable_testing()
endif()
# ############
# Global Compilation Settings
# Build static libraries by default
option(BUILD_SHARED_LIBS "Enable compilation of shared libraries" OFF)
# Export the list of compile-commands into compile_commands.json
set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
# Disable compiler extensions
set(CMAKE_CXX_EXTENSIONS OFF)
# Provide additional debugging information for Debug builds
add_compile_options($<$<CONFIG:Debug>:-ggdb3>)
# Create an Interface target for compiler warnings
add_library(${PROJECT_NAME}_warnings INTERFACE)
target_compile_options(${PROJECT_NAME}_warnings
INTERFACE
-Wall
-Wextra
-Wfloat-conversion
-Wpedantic
-Wno-sign-compare
$<$<CXX_COMPILER_ID:GNU>:-Wno-comma-subscript>
$<$<CXX_COMPILER_ID:GNU>:-Wno-psabi> # Disable notes about ABI changes
$<$<CXX_COMPILER_ID:GNU>:-Wshadow=local>
$<$<CXX_COMPILER_ID:GNU>:-Wno-attributes>
$<$<CXX_COMPILER_ID:GNU>:-Wno-deprecated-declarations>
$<$<CXX_COMPILER_ID:AppleClang,Clang,IntelLLVM>:-Wno-deprecated-comma-subscript>
$<$<CXX_COMPILER_ID:AppleClang,Clang,IntelLLVM>:-Wno-unknown-warning-option>
$<$<CXX_COMPILER_ID:AppleClang,Clang,IntelLLVM>:-Wshadow>
$<$<CXX_COMPILER_ID:AppleClang,Clang,IntelLLVM>:-Wno-gcc-compat>
$<$<CXX_COMPILER_ID:AppleClang,Clang,IntelLLVM>:-Wno-c++20-extensions>
$<$<CXX_COMPILER_ID:AppleClang,Clang,IntelLLVM>:-Wno-c++20-compat>
$<$<CXX_COMPILER_ID:IntelLLVM>:-Wno-tautological-constant-compare>
)
# Provide GNU Installation directories
include(GNUInstallDirs)
# #############
# Build Project
# Find / Build dependencies
add_subdirectory(deps)
# Build and install the library
add_subdirectory(c++/${PROJECT_NAME})
# Tests
if(Build_Tests)
add_subdirectory(test)
endif()
# Python
if(PythonSupport)
add_subdirectory(python/${PROJECT_NAME})
endif()
# Docs
if(NOT IS_SUBPROJECT AND Build_Documentation)
add_subdirectory(doc)
endif()
# Additional configuration files
add_subdirectory(share)
# add packaging for automatic Versioning
add_subdirectory(packaging)
# #############
# Debian Package
option(BUILD_DEBIAN_PACKAGE "Build a deb package" OFF)
if(BUILD_DEBIAN_PACKAGE AND NOT IS_SUBPROJECT)
if(NOT CMAKE_INSTALL_PREFIX STREQUAL "/usr")
message(FATAL_ERROR "CMAKE_INSTALL_PREFIX must be /usr for packaging")
endif()
set(CPACK_PACKAGE_NAME ${PROJECT_NAME})
set(CPACK_GENERATOR "DEB")
set(CPACK_PACKAGE_VERSION ${PROJECT_VERSION})
set(CPACK_PACKAGE_CONTACT "https://github.com/TRIQS/${PROJECT_NAME}")
execute_process(COMMAND dpkg --print-architecture OUTPUT_VARIABLE CMAKE_DEBIAN_PACKAGE_ARCHITECTURE OUTPUT_STRIP_TRAILING_WHITESPACE)
set(CPACK_DEBIAN_PACKAGE_DEPENDS "triqs (>= 3.3)")
set(CPACK_DEBIAN_PACKAGE_SHLIBDEPS ON)
set(CPACK_DEBIAN_PACKAGE_GENERATE_SHLIBS ON)
include(CPack)
endif()

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GNU GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
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The licenses for most software and other practical works are designed
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When we speak of free software, we are referring to freedom, not
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How to Apply These Terms to Your New Programs
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state the exclusion of warranty; and each file should have at least
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Also add information on how to contact you by electronic and paper mail.
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The hypothetical commands `show w' and `show c' should show the appropriate
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The GNU General Public License does not permit incorporating your program
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may consider it more useful to permit linking proprietary applications with
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Public License instead of this License. But first, please read
<http://www.gnu.org/philosophy/why-not-lgpl.html>.

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doc/ChangeLog.md

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# See ../triqs/packaging for other options
FROM flatironinstitute/triqs:unstable-ubuntu-clang
ARG APPNAME=app4triqs
# Install here missing dependencies, e.g.
# RUN apt-get install -y python3-skimage
COPY --chown=build . $SRC/$APPNAME
WORKDIR $BUILD/$APPNAME
RUN chown build .
USER build
ARG BUILD_ID
ARG CMAKE_ARGS
RUN cmake $SRC/$APPNAME -DTRIQS_ROOT=${INSTALL} $CMAKE_ARGS && make -j4 || make -j1 VERBOSE=1
USER root
RUN make install

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def projectName = "app4triqs" /* set to app/repo name */
def dockerName = projectName.toLowerCase();
/* which platform to build documentation on */
def documentationPlatform = "ubuntu-clang"
/* depend on triqs upstream branch/project */
def triqsBranch = env.CHANGE_TARGET ?: env.BRANCH_NAME
def triqsProject = '/TRIQS/triqs/' + triqsBranch.replaceAll('/', '%2F')
/* whether to keep and publish the results */
def keepInstall = !env.BRANCH_NAME.startsWith("PR-")
properties([
disableConcurrentBuilds(),
buildDiscarder(logRotator(numToKeepStr: '10', daysToKeepStr: '30')),
pipelineTriggers(keepInstall ? [
upstream(
threshold: 'SUCCESS',
upstreamProjects: triqsProject
)
] : [])
])
/* map of all builds to run, populated below */
def platforms = [:]
/****************** linux builds (in docker) */
/* Each platform must have a corresponding Dockerfile.PLATFORM in triqs/packaging */
def dockerPlatforms = ["ubuntu-clang", "ubuntu-gcc", "ubuntu-intel", "sanitize"]
/* .each is currently broken in jenkins */
for (int i = 0; i < dockerPlatforms.size(); i++) {
def platform = dockerPlatforms[i]
platforms[platform] = { -> node('linux && docker && triqs') {
stage(platform) { timeout(time: 1, unit: 'HOURS') { ansiColor('xterm') {
checkout scm
/* construct a Dockerfile for this base */
sh """
( echo "FROM flatironinstitute/triqs:${triqsBranch}-${env.STAGE_NAME}" ; sed '0,/^FROM /d' Dockerfile ) > Dockerfile.jenkins
mv -f Dockerfile.jenkins Dockerfile
"""
/* build and tag */
def args = ''
if (platform == documentationPlatform)
args = '-DBuild_Documentation=1'
else if (platform == "sanitize")
args = '-DASAN=ON -DUBSAN=ON -DCMAKE_BUILD_TYPE=RelWithDebInfo'
def img = docker.build("flatironinstitute/${dockerName}:${env.BRANCH_NAME}-${env.STAGE_NAME}", "--build-arg APPNAME=${projectName} --build-arg BUILD_ID=${env.BUILD_TAG} --build-arg CMAKE_ARGS='${args}' .")
catchError(buildResult: 'UNSTABLE', stageResult: 'UNSTABLE') {
img.inside("--shm-size=4gb") {
sh "make -C \$BUILD/${projectName} test CTEST_OUTPUT_ON_FAILURE=1"
}
}
if (!keepInstall) {
sh "docker rmi --no-prune ${img.imageName()}"
}
} } }
} }
}
/****************** osx builds (on host) */
def osxPlatforms = [
["gcc", ['CC=gcc-13', 'CXX=g++-13', 'FC=gfortran-13']],
["clang", ['CC=$BREW/opt/llvm/bin/clang', 'CXX=$BREW/opt/llvm/bin/clang++', 'FC=gfortran-13', 'CXXFLAGS=-I$BREW/opt/llvm/include', 'LDFLAGS=-L$BREW/opt/llvm/lib']]
]
for (int i = 0; i < osxPlatforms.size(); i++) {
def platformEnv = osxPlatforms[i]
def platform = platformEnv[0]
platforms["osx-$platform"] = { -> node('osx && triqs') {
stage("osx-$platform") { timeout(time: 1, unit: 'HOURS') { ansiColor('xterm') {
def srcDir = pwd()
def tmpDir = pwd(tmp:true)
def buildDir = "$tmpDir/build"
/* install real branches in a fixed predictable place so apps can find them */
def installDir = keepInstall ? "${env.HOME}/install/${projectName}/${env.BRANCH_NAME}/${platform}" : "$tmpDir/install"
def triqsDir = "${env.HOME}/install/triqs/${triqsBranch}/${platform}"
def venv = triqsDir
dir(installDir) {
deleteDir()
}
checkout scm
def hdf5 = "${env.BREW}/opt/hdf5@1.10"
dir(buildDir) { withEnv(platformEnv[1].collect { it.replace('\$BREW', env.BREW) } + [
"PATH=$venv/bin:${env.BREW}/bin:/usr/bin:/bin:/usr/sbin",
"HDF5_ROOT=$hdf5",
"C_INCLUDE_PATH=$hdf5/include:${env.BREW}/include",
"CPLUS_INCLUDE_PATH=$venv/include:$hdf5/include:${env.BREW}/include",
"LIBRARY_PATH=$venv/lib:$hdf5/lib:${env.BREW}/lib",
"LD_LIBRARY_PATH=$hdf5/lib",
"PYTHONPATH=$installDir/lib/python3.9/site-packages",
"CMAKE_PREFIX_PATH=$venv/lib/cmake/triqs",
"VIRTUAL_ENV=$venv",
"OMP_NUM_THREADS=2"]) {
deleteDir()
/* note: this is installing into the parent (triqs) venv (install dir), which is thus shared among apps and so not be completely safe */
sh "pip3 install -U -r $srcDir/requirements.txt"
sh "cmake $srcDir -DCMAKE_INSTALL_PREFIX=$installDir -DTRIQS_ROOT=$triqsDir"
sh "make -j2 || make -j1 VERBOSE=1"
catchError(buildResult: 'UNSTABLE', stageResult: 'UNSTABLE') { try {
sh "make test CTEST_OUTPUT_ON_FAILURE=1"
} catch (exc) {
archiveArtifacts(artifacts: 'Testing/Temporary/LastTest.log')
throw exc
} }
sh "make install"
} }
} } }
} }
}
/****************** wrap-up */
def error = null
try {
parallel platforms
if (keepInstall) { node('linux && docker && triqs') {
/* Publish results */
stage("publish") { timeout(time: 5, unit: 'MINUTES') {
def commit = sh(returnStdout: true, script: "git rev-parse HEAD").trim()
def release = env.BRANCH_NAME == "master" || env.BRANCH_NAME == "unstable" || sh(returnStdout: true, script: "git describe --exact-match HEAD || true").trim()
def workDir = pwd(tmp:true)
lock('triqs_publish') {
/* Update documention on gh-pages branch */
dir("$workDir/gh-pages") {
def subdir = "${projectName}/${env.BRANCH_NAME}"
git(url: "ssh://git@github.com/TRIQS/TRIQS.github.io.git", branch: "master", credentialsId: "ssh", changelog: false)
sh "rm -rf ${subdir}"
docker.image("flatironinstitute/${dockerName}:${env.BRANCH_NAME}-${documentationPlatform}").inside() {
sh """#!/bin/bash -ex
base=\$INSTALL/share/doc
dir="${projectName}"
[[ -d \$base/triqs_\$dir ]] && dir=triqs_\$dir || [[ -d \$base/\$dir ]]
cp -rp \$base/\$dir ${subdir}
"""
}
sh "git add -A ${subdir}"
sh """
git commit --author='Flatiron Jenkins <jenkins@flatironinstitute.org>' --allow-empty -m 'Generated documentation for ${subdir}' -m '${env.BUILD_TAG} ${commit}'
"""
// note: credentials used above don't work (need JENKINS-28335)
sh "git push origin master"
}
/* Update packaging repo submodule */
if (release) { dir("$workDir/packaging") { try {
git(url: "ssh://git@github.com/TRIQS/packaging.git", branch: env.BRANCH_NAME, credentialsId: "ssh", changelog: false)
// note: credentials used above don't work (need JENKINS-28335)
sh """#!/bin/bash -ex
dir="${projectName}"
[[ -d triqs_\$dir ]] && dir=triqs_\$dir || [[ -d \$dir ]]
echo "160000 commit ${commit}\t\$dir" | git update-index --index-info
git commit --author='Flatiron Jenkins <jenkins@flatironinstitute.org>' -m 'Autoupdate ${projectName}' -m '${env.BUILD_TAG}'
git push origin ${env.BRANCH_NAME}
"""
} catch (err) {
/* Ignore, non-critical -- might not exist on this branch */
echo "Failed to update packaging repo"
} } }
}
} }
} }
} catch (err) {
error = err
} finally {
/* send email on build failure (declarative pipeline's post section would work better) */
if ((error != null || currentBuild.currentResult != 'SUCCESS') && env.BRANCH_NAME != "jenkins") emailext(
subject: "\$PROJECT_NAME - Build # \$BUILD_NUMBER - FAILED",
body: """\$PROJECT_NAME - Build # \$BUILD_NUMBER - FAILED
Check console output at \$BUILD_URL to view full results.
Building \$BRANCH_NAME for \$CAUSE
\$JOB_DESCRIPTION
Changes:
\$CHANGES
End of build log:
\${BUILD_LOG,maxLines=60}
""",
to: 'nwentzell@flatironinstitute.org',
recipientProviders: [
[$class: 'DevelopersRecipientProvider'],
],
replyTo: '$DEFAULT_REPLYTO'
)
if (error != null) throw error
}

18
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app4triqs - An example application using triqs and cpp2py
Copyright (C) 2017-2018, N. Wentzell, O. Parcollet
Copyright (C) 2018-2019, The Simons Foundation
authors: N. Wentzell, D. Simons, H. Strand, O. Parcollet
app4triqs is free software: you can redistribute it and/or modify it under the
terms of the GNU General Public License as published by the Free Software
Foundation, either version 3 of the License, or (at your option) any later
version.
app4triqs is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with
app4triqs (in the file COPYING.txt in this directory). If not, see
<http://www.gnu.org/licenses/>.

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[![build](https://github.com/TRIQS/app4triqs/workflows/build/badge.svg)](https://github.com/TRIQS/app4triqs/actions?query=workflow%3Abuild)
# app4triqs - A skeleton for a TRIQS application
Initial Setup
-------------
To adapt this skeleton for a new TRIQS application, the following steps are necessary:
* Create a repository, e.g. https://github.com/username/appname
* Run the following commands in order after replacing **appname** accordingly
```bash
git clone https://github.com/triqs/app4triqs --branch unstable appname
cd appname
./share/squash_history.sh
./share/replace_and_rename.py appname
git add -A && git commit -m "Adjust app4triqs skeleton for appname"
```
You can now add your github repository and push to it
```bash
git remote add origin https://github.com/username/appname
git remote update
git push origin unstable
```
If you prefer to use the [SSH interface](https://help.github.com/en/articles/connecting-to-github-with-ssh)
to the remote repository, replace the http link with e.g. `git@github.com:username/appname`.
### Merging app4triqs skeleton updates ###
You can merge future changes to the app4triqs skeleton into your project with the following commands
```bash
git remote update
git merge app4triqs_remote/unstable -X ours -m "Merge latest app4triqs skeleton changes"
```
If you should encounter any conflicts resolve them and `git commit`.
Finally we repeat the replace and rename command from the initial setup.
```bash
./share/replace_and_rename.py appname
git commit --amend
```
Now you can compare against the previous commit with:
```bash
git diff prev_git_hash
````
Getting Started
---------------
After setting up your application as described above you should customize the following files and directories
according to your needs (replace app4triqs in the following by the name of your application)
* Adjust or remove the `README.md` and `doc/ChangeLog.md` file
* In the `c++/app4triqs` subdirectory adjust the example files `app4triqs.hpp` and `app4triqs.cpp` or add your own source files.
* In the `test/c++` subdirectory adjust the example test `basic.cpp` or add your own tests.
* In the `python/app4triqs` subdirectory add your Python source files.
Be sure to remove the `app4triqs_module_desc.py` file unless you want to generate a Python module from your C++ source code.
* In the `test/python` subdirectory adjust the example test `Basic.py` or add your own tests.
* Adjust any documentation examples given as `*.rst` files in the doc directory.
* Adjust the sphinx configuration in `doc/conf.py.in` as necessary.
* The build and install process is identical to the one outline [here](https://triqs.github.io/app4triqs/unstable/install.html).
### Optional ###
----------------
* If you want to wrap C++ classes and/or functions provided in the `c++/app4triqs/app4triqs.hpp` rerun the `c++2py` tool with
```bash
c++2py -r app4triqs_module_desc.py
```
* Add your email address to the bottom section of `Jenkinsfile` for Jenkins CI notification emails
```
End of build log:
\${BUILD_LOG,maxLines=60}
""",
to: 'user@domain.org',
```

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file(GLOB_RECURSE sources *.cpp)
add_library(${PROJECT_NAME}_c ${sources})
add_library(${PROJECT_NAME}::${PROJECT_NAME}_c ALIAS ${PROJECT_NAME}_c)
# Link against triqs and enable warnings
target_link_libraries(${PROJECT_NAME}_c PUBLIC triqs PRIVATE $<BUILD_INTERFACE:${PROJECT_NAME}_warnings>)
# Configure target and compilation
set_target_properties(${PROJECT_NAME}_c PROPERTIES
POSITION_INDEPENDENT_CODE ON
VERSION ${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}
)
target_include_directories(${PROJECT_NAME}_c PUBLIC $<BUILD_INTERFACE:${PROJECT_SOURCE_DIR}/c++>)
target_include_directories(${PROJECT_NAME}_c SYSTEM INTERFACE $<INSTALL_INTERFACE:${CMAKE_INSTALL_PREFIX}/include>)
target_compile_definitions(${PROJECT_NAME}_c PUBLIC
APP4TRIQS_GIT_HASH=${PROJECT_GIT_HASH}
TRIQS_GIT_HASH=${TRIQS_GIT_HASH}
$<$<CONFIG:Debug>:APP4TRIQS_DEBUG>
$<$<CONFIG:Debug>:TRIQS_DEBUG>
$<$<CONFIG:Debug>:TRIQS_ARRAYS_ENFORCE_BOUNDCHECK>
)
# Install library and headers
install(TARGETS ${PROJECT_NAME}_c EXPORT ${PROJECT_NAME}-targets DESTINATION ${CMAKE_INSTALL_LIBDIR})
install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} DESTINATION include FILES_MATCHING PATTERN "*.hpp" PATTERN "*.h")
# ========= Static Analyzer Checks ==========
option(ANALYZE_SOURCES OFF "Run static analyzer checks if found (clang-tidy, cppcheck)")
if(ANALYZE_SOURCES)
# Locate static analyzer tools
find_program(CPPCHECK_EXECUTABLE NAMES "cppcheck" PATHS ENV PATH)
find_program(CLANG_TIDY_EXECUTABLE NAMES "clang-tidy" PATHS ENV PATH)
# Run clang-tidy if found
if(CLANG_TIDY_EXECUTABLE)
message(STATUS "clang-tidy found: ${CLANG_TIDY_EXECUTABLE}")
set_target_properties(${PROJECT_NAME}_c PROPERTIES CXX_CLANG_TIDY "${CLANG_TIDY_EXECUTABLE}")
else()
message(STATUS "clang-tidy not found in $PATH. Please consider installing clang-tidy for additional checks!")
endif()
# Run cppcheck if found
if(CPPCHECK_EXECUTABLE)
message(STATUS "cppcheck found: ${CPPCHECK_EXECUTABLE}")
add_custom_command(
TARGET ${PROJECT_NAME}_c
COMMAND ${CPPCHECK_EXECUTABLE}
--enable=warning,style,performance,portability
--std=c++23
--template=gcc
--verbose
--force
--quiet
${sources}
WORKING_DIRECTORY
${CMAKE_CURRENT_SOURCE_DIR}
)
else()
message(STATUS "cppcheck not found in $PATH. Please consider installing cppcheck for additional checks!")
endif()
endif()
# ========= Dynamic Analyzer Checks ==========
option(ASAN OFF "Compile library and executables with LLVM Address Sanitizer")
if(ASAN)
if(NOT TARGET asan)
find_package(sanitizer REQUIRED COMPONENTS asan)
endif()
target_link_libraries(${PROJECT_NAME}_c PUBLIC $<BUILD_INTERFACE:asan>)
endif()
option(UBSAN OFF "Compile library and executables with LLVM Undefined Behavior Sanitizer")
if(UBSAN)
if(NOT TARGET ubsan)
find_package(sanitizer REQUIRED COMPONENTS ubsan)
endif()
target_link_libraries(${PROJECT_NAME}_c PUBLIC $<BUILD_INTERFACE:ubsan>)
endif()
option(MSAN OFF "Compile library and executables with LLVM Memory Sanitizer")
if(MSAN)
if(NOT TARGET msan)
find_package(sanitizer REQUIRED COMPONENTS msan)
endif()
target_link_libraries(${PROJECT_NAME}_c PUBLIC $<BUILD_INTERFACE:msan>)
endif()
option(TSAN OFF "Compile library and executables with LLVM Thread Sanitizer")
if(TSAN)
if(NOT TARGET tsan)
find_package(sanitizer REQUIRED COMPONENTS tsan)
endif()
target_link_libraries(${PROJECT_NAME}_c PUBLIC $<BUILD_INTERFACE:tsan>)
endif()

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#include <cmath>
#include "./app4triqs.hpp"
namespace app4triqs {
toto &toto::operator+=(toto const &b) {
this->i += b.i;
return *this;
}
toto toto::operator+(toto const &b) const {
auto res = *this;
res += b;
return res;
}
bool toto::operator==(toto const &b) const { return (this->i == b.i); }
void h5_write(h5::group grp, std::string subgroup_name, toto const &m) {
grp = subgroup_name.empty() ? grp : grp.create_group(subgroup_name);
h5_write(grp, "i", m.i);
h5_write_attribute(grp, "Format", toto::hdf5_format());
}
void h5_read(h5::group grp, std::string subgroup_name, toto &m) {
grp = subgroup_name.empty() ? grp : grp.open_group(subgroup_name);
int i;
h5_read(grp, "i", i);
m = toto(i);
}
int chain(int i, int j) {
int n_digits_j = j > 0 ? (int)log10(j) + 1 : 1;
return i * int(pow(10, n_digits_j)) + j;
}
} // namespace app4triqs

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#pragma once
#include <triqs/gfs.hpp>
#include <triqs/mesh.hpp>
#include <h5/h5.hpp>
namespace app4triqs {
/**
* A very useful and important class
*
* @note A Useful note
* @include app4triqs/app4triqs.hpp
*/
class toto {
int i = 0;
public:
toto() = default;
/**
* Construct from integer
*
* @param i_ a scalar :math:`G(\tau)`
*/
explicit toto(int i_) : i(i_) {}
~toto() = default;
// Copy/Move construction
toto(toto const &) = default;
toto(toto &&) = default;
/// Copy/Move assignment
toto &operator=(toto const &) = default;
toto &operator=(toto &&) = default;
/// Simple accessor
[[nodiscard]] int get_i() const { return i; }
/**
* A simple function with :math:`G(\tau)`
*
* @param u Nothing useful
*/
int f(int u) { return u; }
/// Arithmetic operations
toto operator+(toto const &b) const;
toto &operator+=(toto const &b);
/// Comparison
bool operator==(toto const &b) const;
/// HDF5
static std::string hdf5_format() { return "Toto"; }
friend void h5_write(h5::group grp, std::string subgroup_name, toto const &m);
friend void h5_read(h5::group grp, std::string subgroup_name, toto &m);
/// Serialization
template <class Archive> void serialize(Archive &ar, const unsigned int) { ar &i; }
};
/**
* Chain digits of two integers
*
* @head A set of functions that implement chaining
*
* @tail Do I really need to explain more ?
*
* @param i The first integer
* @param j The second integer
* @return An integer containing the digits of both i and j
*
*/
int chain(int i, int j);
} // namespace app4triqs

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*

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include(external_dependency.cmake)
# Add your dependencies with the function
#
# external_dependency(name
# [VERSION <version-number>]
# [GIT_REPO <url>]
# [GIT_TAG <tag>]
# [BUILD_ALWAYS]
# [EXCLUDE_FROM_ALL]
# )
#
# Resolve the dependency using the following steps in order.
# If a step was successful, skip the remaining ones.
#
# 1. Use find_package(name [<version-number>])
# to locate the package in the system.
# Skip this step if Build_Deps option is set.
# 2. Try to find a directory containing the sources
# at ${CMAKE_CURRENT_SOURCE_DIR}/name and
# ${CMAKE_SOURCE_DIR}/deps/name. If found
# build it as a cmake sub-project.
# 3. If GIT_REPO is provided, git clone the sources,
# and build them as a cmake sub-project.
#
# Addtional options:
#
# GIT_TAG - Use this keyword to specify the git-tag, branch or commit hash
#
# BUILD_ALWAYS - If set, this dependency will always be built from source
# and will never be searched in the system.
#
# EXCLUDE_FROM_ALL - If set, targets of the dependency cmake subproject
# will not be included in the ALL target of the project.
# In particular the dependency will not be installed.
if(NOT DEFINED Build_Deps)
set(Build_Deps "Always" CACHE STRING "Do we build dependencies from source? [Never/Always/IfNotFound]")
else()
set(Build_Deps_Opts "Never" "Always" "IfNotFound")
if(NOT ${Build_Deps} IN_LIST Build_Deps_Opts)
message(FATAL_ERROR "Build_Deps option should be either 'Never', 'Always' or 'IfNotFound'")
endif()
set(Build_Deps ${Build_Deps} CACHE STRING "Do we build dependencies from source? [Never/Always/IfNotFound]")
if(NOT IS_SUBPROJECT AND NOT Build_Deps STREQUAL "Always" AND (ASAN OR UBSAN))
message(WARNING "For builds with llvm sanitizers (ASAN/UBSAN) it is recommended to use -DBuild_Deps=Always to avoid false positives.")
endif()
endif()
# -- Cpp2Py --
if(PythonSupport OR (NOT IS_SUBPROJECT AND Build_Documentation))
external_dependency(Cpp2Py
GIT_REPO https://github.com/TRIQS/cpp2py
VERSION 2.0
GIT_TAG unstable
BUILD_ALWAYS
EXCLUDE_FROM_ALL
)
endif()
# -- GTest --
external_dependency(GTest
GIT_REPO https://github.com/google/googletest
GIT_TAG main
BUILD_ALWAYS
EXCLUDE_FROM_ALL
)

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# Copyright (c) 2020 Simons Foundation
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You may obtain a copy of the License at
# https://www.gnu.org/licenses/gpl-3.0.txt
# Consider ROOT env variables in find_package
if(POLICY CMP0074)
cmake_policy(SET CMP0074 NEW)
endif()
# Make sure that imported targets are always global
get_property(IMPORTED_ALWAYS_GLOBAL GLOBAL PROPERTY IMPORTED_ALWAYS_GLOBAL)
if(NOT IMPORTED_ALWAYS_GLOBAL)
function(add_library)
set(_args ${ARGN})
if ("${_args}" MATCHES ";IMPORTED")
list(APPEND _args GLOBAL)
endif()
_add_library(${_args})
endfunction()
set_property(GLOBAL PROPERTY IMPORTED_ALWAYS_GLOBAL TRUE)
endif()
# Define External Dependency Function
function(external_dependency)
cmake_parse_arguments(ARG "EXCLUDE_FROM_ALL;BUILD_ALWAYS" "VERSION;GIT_REPO;GIT_TAG" "" ${ARGN})
# -- Was dependency already found?
get_property(${ARGV0}_FOUND GLOBAL PROPERTY ${ARGV0}_FOUND)
if(${ARGV0}_FOUND)
message(STATUS "Dependency ${ARGV0} was already resolved.")
return()
endif()
# -- Try to find package in system.
if(NOT ARG_BUILD_ALWAYS AND NOT Build_Deps STREQUAL "Always")
find_package(${ARGV0} ${ARG_VERSION} QUIET HINTS ${CMAKE_INSTALL_PREFIX})
if(${ARGV0}_FOUND)
message(STATUS "Found dependency ${ARGV0} in system ${${ARGV0}_ROOT}")
return()
elseif(Build_Deps STREQUAL "Never")
message(FATAL_ERROR "Could not find dependency ${ARGV0} in system. Please install the dependency manually or use -DBuild_Deps=IfNotFound during cmake configuration to automatically build all dependencies that are not found.")
endif()
endif()
# -- Build package from source
message(STATUS " =============== Configuring Dependency ${ARGV0} =============== ")
if(ARG_EXCLUDE_FROM_ALL)
set(subdir_opts EXCLUDE_FROM_ALL)
set(Build_Tests OFF)
set(Build_Documentation OFF)
endif()
if(IS_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/${ARGV0})
message(STATUS "Found sources for dependency ${ARGV0} at ${CMAKE_CURRENT_SOURCE_DIR}/${ARGV0}")
add_subdirectory(${ARGV0} ${subdir_opts})
elseif(IS_DIRECTORY ${CMAKE_SOURCE_DIR}/deps/${ARGV0})
message(STATUS "Found sources for dependency ${ARGV0} at ${CMAKE_SOURCE_DIR}/deps/${ARGV0}")
add_subdirectory(${ARGV0} ${subdir_opts})
elseif(ARG_GIT_REPO)
set(bin_dir ${CMAKE_CURRENT_BINARY_DIR}/${ARGV0})
set(src_dir ${bin_dir}_src)
if(NOT IS_DIRECTORY ${src_dir})
if(ARG_GIT_TAG)
set(clone_opts --branch ${ARG_GIT_TAG} -c advice.detachedHead=false)
endif()
if(NOT GIT_EXECUTABLE)
find_package(Git REQUIRED)
endif()
execute_process(COMMAND ${GIT_EXECUTABLE} clone ${ARG_GIT_REPO} --depth 1 ${clone_opts} ${src_dir}
RESULT_VARIABLE clone_failed
ERROR_VARIABLE clone_error
)
if(clone_failed)
message(FATAL_ERROR "Failed to clone sources for dependency ${ARGV0}.\n ${clone_error}")
endif()
endif()
add_subdirectory(${src_dir} ${bin_dir} ${subdir_opts})
else()
message(FATAL_ERROR "Could not find or build dependency ${ARGV0}")
endif()
message(STATUS " =============== End ${ARGV0} Configuration =============== ")
set_property(GLOBAL PROPERTY ${ARGV0}_FOUND TRUE)
endfunction()

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# Generate the sphinx config file
configure_file(${CMAKE_CURRENT_SOURCE_DIR}/conf.py.in ${CMAKE_CURRENT_BINARY_DIR}/conf.py @ONLY)
# -----------------------------------------------------------------------------
# Create an optional target that allows us to regenerate the C++ doc with c++2rst
# -----------------------------------------------------------------------------
add_custom_target(${PROJECT_NAME}_docs_cpp2rst)
include(${PROJECT_SOURCE_DIR}/share/cmake/extract_flags.cmake)
extract_flags(${PROJECT_NAME}_c BUILD_INTERFACE)
separate_arguments(${PROJECT_NAME}_c_CXXFLAGS)
macro(generate_docs header_file)
add_custom_command(
TARGET ${PROJECT_NAME}_docs_cpp2rst
COMMAND rm -rf ${CMAKE_CURRENT_SOURCE_DIR}/cpp2rst_generated
COMMAND
PYTHONPATH=${CPP2PY_BINARY_DIR}:$ENV{PYTHONPATH}
PATH=${CPP2PY_BINARY_DIR}/bin:${CPP2PY_ROOT}/bin:$ENV{PATH}
c++2rst
${header_file}
-N ${PROJECT_NAME}
--output_directory ${CMAKE_CURRENT_SOURCE_DIR}/cpp2rst_generated
-I${PROJECT_SOURCE_DIR}/c++
--cxxflags="${${PROJECT_NAME}_c_CXXFLAGS}"
)
endmacro(generate_docs)
generate_docs(${PROJECT_SOURCE_DIR}/c++/${PROJECT_NAME}/${PROJECT_NAME}.hpp)
# --------------------------------------------------------
# Build & Run the C++ doc examples and capture the output
# --------------------------------------------------------
add_custom_target(${PROJECT_NAME}_docs_example_output)
file(GLOB_RECURSE ExampleList RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.cpp)
foreach(example ${ExampleList})
get_filename_component(f ${example} NAME_WE)
get_filename_component(d ${example} DIRECTORY)
add_executable(${PROJECT_NAME}_doc_${f} EXCLUDE_FROM_ALL ${example})
set_property(TARGET ${PROJECT_NAME}_doc_${f} PROPERTY RUNTIME_OUTPUT_DIRECTORY ${d})
target_link_libraries(${PROJECT_NAME}_doc_${f} triqs)
add_custom_command(TARGET ${PROJECT_NAME}_doc_${f}
COMMAND ${PROJECT_NAME}_doc_${f} > ${CMAKE_CURRENT_SOURCE_DIR}/${d}/${f}.output 2>/dev/null
WORKING_DIRECTORY ${d}
)
add_dependencies(${PROJECT_NAME}_docs_example_output ${PROJECT_NAME}_doc_${f})
endforeach()
# ---------------------------------
# Top Sphinx target
# ---------------------------------
if(NOT DEFINED SPHINXBUILD_EXECUTABLE)
find_package(Sphinx)
endif()
# Sphinx has internal caching, always run it
add_custom_target(${PROJECT_NAME}_docs_sphinx ALL)
add_custom_command(
TARGET ${PROJECT_NAME}_docs_sphinx
COMMAND PYTHONPATH=${PROJECT_BINARY_DIR}/python:$ENV{PYTHONPATH} ${SPHINXBUILD_EXECUTABLE} -j auto -c . -b html ${CMAKE_CURRENT_SOURCE_DIR} html
)
option(Sphinx_Only "When building the documentation, skip the Python Modules and the generation of C++ Api and example outputs" OFF)
if(NOT Sphinx_Only)
# Autodoc usage requires the python modules to be built first
get_property(CPP2PY_MODULES_LIST GLOBAL PROPERTY CPP2PY_MODULES_LIST)
if(CPP2PY_MODULES_LIST)
add_dependencies(${PROJECT_NAME}_docs_sphinx ${CPP2PY_MODULES_LIST})
endif()
# Generation of C++ Api and Example Outputs
add_dependencies(${PROJECT_NAME}_docs_sphinx ${PROJECT_NAME}_docs_cpp2rst ${PROJECT_NAME}_docs_example_output)
endif()
# ---------------------------------
# Install
# ---------------------------------
install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/html/ COMPONENT documentation DESTINATION share/doc/${PROJECT_NAME}
FILES_MATCHING
REGEX "\\.(html|pdf|png|gif|jpg|svg|ico|js|xsl|css|py|txt|inv|bib|ttf|woff2|eot|sh)$"
PATTERN "_*"
)

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(changelog)=
# Changelog
## Version 3.1.0
app4triqs version 3.1.0 is a compatibility
release for TRIQS version 3.1.0 that
* moves to cmake 3.12.4 and c++20
* improves ghactions and jenkins configuration
* switches documentation to read-the-docs theme
* uses googletest main branch
* fixes several skeleton issues
We thank all contributors: Alexander Hampel, Dylan Simon, Nils Wentzell
## Version 3.0.0
app4triqs version 3.0.0 is a compatibility
release for TRIQS version 3.0.0 that
* introduces compatibility with Python 3 (Python 2 no longer supported)
* adds a cmake-based dependency management
* fixes several application issues
## Version 2.2.0
app4triqs Version 2.2.0 provides a project
skeleton for TRIQS applications based on
the TRIQS Library Version 2.2.0.
It is intended for applications with both
Python and C++ components.
This is the initial release for this project.

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@import url("theme.css");
.wy-nav-content {
max-width: 70em;
}

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{{ fullname | escape | underline }}
.. currentmodule:: {{ module }}
.. autoclass:: {{ objname }}
{% block methods %}
{% if methods %}
.. rubric:: {{ _('Methods') }}
.. autosummary::
:toctree:
{% for item in methods %}
~{{ name }}.{{ item }}
{%- endfor %}
{% endif %}
{% endblock %}
{% block attributes %}
{% if attributes %}
.. rubric:: {{ _('Attributes') }}
.. autosummary::
:toctree:
{% for item in attributes %}
~{{ name }}.{{ item }}
{%- endfor %}
{% endif %}
{% endblock %}

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{{ fullname | escape | underline}}
.. automodule:: {{ fullname }}
{% block functions %}
{% if functions %}
.. rubric:: Functions
.. autosummary::
:toctree:
{% for item in functions %}
{{ item }}
{%- endfor %}
{% endif %}
{% endblock %}
{% block attributes %}
{% if attributes %}
.. rubric:: Module Attributes
.. autosummary::
:toctree:
{% for item in attributes %}
{{ item }}
{%- endfor %}
{% endif %}
{% endblock %}
{% block classes %}
{% if classes %}
.. rubric:: {{ _('Classes') }}
.. autosummary::
:toctree:
:template: autosummary_class_template.rst
{% for item in classes %}
{{ item }}
{%- endfor %}
{% endif %}
{% endblock %}
{% block exceptions %}
{% if exceptions %}
.. rubric:: {{ _('Exceptions') }}
.. autosummary::
:toctree:
{% for item in exceptions %}
{{ item }}
{%- endfor %}
{% endif %}
{% endblock %}
{% block modules %}
{% if modules %}
.. rubric:: Modules
.. autosummary::
:toctree:
:template: autosummary_module_template.rst
:recursive:
{% for item in modules %}
{{ item }}
{%- endfor %}
{% endif %}
{% endblock %}

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<p style="background-color:white;">
<a href="http://ipht.cea.fr"> <img style="width: 80px; margin: 10px 5px 0 0" src='_static/logo_cea.png' alt="CEA"/> </a>
<a href="http://www.cpht.polytechnique.fr"> <img style="width: 80px; margin: 10px 5px 0 5px" src='_static/logo_x.png' alt="Ecole Polytechnique"/> </a>
<br>
<a href="http://www.cnrs.fr"> <img style="width: 80px; margin: 10px 0 0 5px" src='_static/logo_cnrs.png' alt="CNRS"/> </a>
<img style="width: 80px; margin: 10px 0 0 5px" src='_static/logo_erc.jpg' alt="ERC"/>
<a href="https://www.simonsfoundation.org/flatiron"> <img style="width: 200px; margin: 10px 0 0 5px" src='http://itensor.org/flatiron_logo.png' alt="Flatiron Institute"/> </a>
<br>
<a href="https://www.simonsfoundation.org"> <img style="width: 200px; margin: 10px 0 0 5px" src='http://itensor.org/simons_found_logo.jpg' alt="Simons Foundation"/> </a>
</p>
<hr>
<p>
<a href="https://github.com/triqs/app4triqs"> <img style="width: 200px; margin: 10px 0 0 5px" src='_static/logo_github.png' alt="Visit the project on GitHub"/> </a>
</p>

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.. _about:
About app4triqs
***************
An example application using ``cpp2py`` and TRIQS.
Written and maintained by N. Wentzell with contributions from H. U.R. Strand.

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# -*- coding: utf-8 -*-
#
# TRIQS documentation build configuration file
import sys
sys.path.insert(0, "@CMAKE_CURRENT_SOURCE_DIR@/sphinxext")
# exclude these folders from scanning by sphinx
exclude_patterns = ['_templates']
extensions = ['sphinx.ext.autodoc',
'sphinx.ext.mathjax',
'sphinx.ext.intersphinx',
'sphinx.ext.doctest',
'sphinx.ext.todo',
'sphinx.ext.viewcode',
'sphinx.ext.autosummary',
'sphinx.ext.githubpages',
'sphinx_autorun',
'nbsphinx',
'myst_parser',
'matplotlib.sphinxext.plot_directive',
'numpydoc']
myst_enable_extensions = [
"amsmath",
"colon_fence",
"deflist",
"dollarmath",
"html_admonition",
"html_image",
"linkify",
"replacements",
"smartquotes",
"substitution",
"tasklist",
]
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
source_suffix = '.rst'
# Turn on sphinx.ext.autosummary
autosummary_generate = True
autosummary_imported_members=False
project = '@PROJECT_NAME@'
version = '@PROJECT_VERSION@'
# this makes the current project version available as var in every rst file
rst_epilog = """
.. |PROJECT_VERSION| replace:: {version}
""".format(
version = version,
)
copyright = '2018-2021 The Simons Foundation, authors: A. Hampel, O. Parcollet, D. Simons, H. Strand, N. Wentzell'
mathjax_path = "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/MathJax.js?config=default"
templates_path = ['@CMAKE_CURRENT_SOURCE_DIR@/_templates']
# this requires the sphinx_rtd_theme to be installed via pip
html_theme = 'sphinx_rtd_theme'
# this loads the custom css file to change the page width
html_style = 'css/custom.css'
html_favicon = '@CMAKE_CURRENT_SOURCE_DIR@/_static/triqs_logo/triqs_favicon.ico'
#html_logo = '@CMAKE_CURRENT_SOURCE_DIR@/logos/logo.png'
# options for the the rtd theme
html_theme_options = {
'logo_only': False,
'display_version': True,
'prev_next_buttons_location': 'bottom',
'style_external_links': False,
'vcs_pageview_mode': '',
'style_nav_header_background': '#7E588A',
# Toc options
'collapse_navigation': False,
'sticky_navigation': True,
'navigation_depth': 5,
'includehidden': True,
'titles_only': False
}
html_show_sphinx = False
html_context = {'header_title': '@PROJECT_NAME@'}
html_static_path = ['@CMAKE_CURRENT_SOURCE_DIR@/_static']
html_sidebars = {'index': ['sideb.html', 'searchbox.html']}
htmlhelp_basename = '@PROJECT_NAME@doc'
# Plot options
plot_include_source = True
plot_html_show_source_link = False
plot_html_show_formats = False
intersphinx_mapping = {'python': ('https://docs.python.org/3.11', None), 'triqslibs': ('https://triqs.github.io/triqs/latest', None)}
# open links in new tab instead of same window
from sphinx.writers.html import HTMLTranslator
from docutils import nodes
from docutils.nodes import Element
class PatchedHTMLTranslator(HTMLTranslator):
def visit_reference(self, node: Element) -> None:
atts = {'class': 'reference'}
if node.get('internal') or 'refuri' not in node:
atts['class'] += ' internal'
else:
atts['class'] += ' external'
# ---------------------------------------------------------
# Customize behavior (open in new tab, secure linking site)
atts['target'] = '_blank'
atts['rel'] = 'noopener noreferrer'
# ---------------------------------------------------------
if 'refuri' in node:
atts['href'] = node['refuri'] or '#'
if self.settings.cloak_email_addresses and atts['href'].startswith('mailto:'):
atts['href'] = self.cloak_mailto(atts['href'])
self.in_mailto = True
else:
assert 'refid' in node, \
'References must have "refuri" or "refid" attribute.'
atts['href'] = '#' + node['refid']
if not isinstance(node.parent, nodes.TextElement):
assert len(node) == 1 and isinstance(node[0], nodes.image)
atts['class'] += ' image-reference'
if 'reftitle' in node:
atts['title'] = node['reftitle']
if 'target' in node:
atts['target'] = node['target']
self.body.append(self.starttag(node, 'a', '', **atts))
if node.get('secnumber'):
self.body.append(('%s' + self.secnumber_suffix) %
'.'.join(map(str, node['secnumber'])))
def setup(app):
app.set_translator('html', PatchedHTMLTranslator)

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.. _documentation:
Documentation
*************
.. math::
(a + b)^2 &= (a + b)(a + b) \\
&= a^2 + 2ab + b^2
C++ reference manual
====================
.. toctree::
:maxdepth: 5
cpp2rst_generated/contents
Python reference manual
=======================
.. autosummary::
:toctree: _autosummary
:template: autosummary_module_template.rst
:recursive:
app4triqs

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.. _welcome:
app4triqs
*********
.. sidebar:: app4triqs |PROJECT_VERSION|
This is the homepage of app4triqs |PROJECT_VERSION|.
For changes see the :ref:`changelog page <changelog>`.
.. image:: _static/logo_github.png
:width: 75%
:align: center
:target: https://github.com/triqs/app4triqs
An example application using cpp2py and :ref:`TRIQS <triqslibs:welcome>`.
This documentation is generated based on `rst <https://de.wikipedia.org/wiki/ReStructuredText>`_ files
and the comments in the sources and headers.
Learn how to use app4triqs in the :ref:`documentation`.
.. toctree::
:maxdepth: 2
:hidden:
install
documentation
issues
ChangeLog.md
about

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.. highlight:: bash
.. _install:
Install app4triqs
*******************
Compiling app4triqs from source
===============================
.. note:: To guarantee reproducibility in scientific calculations we strongly recommend the use of a stable `release <https://github.com/TRIQS/triqs/releases>`_ of both TRIQS and its applications.
Prerequisites
-------------
#. The :ref:`TRIQS <triqslibs:welcome>` library, see :ref:`TRIQS installation instruction <triqslibs:installation>`.
In the following, we assume that TRIQS is installed in the directory ``path_to_triqs``.
Installation steps
------------------
#. Download the source code of the latest stable version by cloning the ``TRIQS/app4triqs`` repository from GitHub::
$ git clone https://github.com/TRIQS/app4triqs app4triqs.src
#. Create and move to a new directory where you will compile the code::
$ mkdir app4triqs.build && cd app4triqs.build
#. Ensure that your shell contains the TRIQS environment variables by sourcing the ``triqsvars.sh`` file from your TRIQS installation::
$ source path_to_triqs/share/triqs/triqsvars.sh
#. In the build directory call cmake, including any additional custom CMake options, see below::
$ cmake ../app4triqs.src
#. Compile the code, run the tests and install the application::
$ make
$ make test
$ make install
Version compatibility
---------------------
Keep in mind that the version of ``app4triqs`` must be compatible with your TRIQS library version,
see :ref:`TRIQS website <triqslibs:versions>`.
In particular the Major and Minor Version numbers have to be the same.
To use a particular version, go into the directory with the sources, and look at all available versions::
$ cd app4triqs.src && git tag
Checkout the version of the code that you want::
$ git checkout 2.1.0
and follow steps 2 to 4 above to compile the code.
Custom CMake options
--------------------
The compilation of ``app4triqs`` can be configured using CMake-options::
cmake ../app4triqs.src -DOPTION1=value1 -DOPTION2=value2 ...
+-----------------------------------------------------------------+-----------------------------------------------+
| Options | Syntax |
+=================================================================+===============================================+
| Specify an installation path other than path_to_triqs | -DCMAKE_INSTALL_PREFIX=path_to_app4triqs |
+-----------------------------------------------------------------+-----------------------------------------------+
| Build in Debugging Mode | -DCMAKE_BUILD_TYPE=Debug |
+-----------------------------------------------------------------+-----------------------------------------------+
| Disable testing (not recommended) | -DBuild_Tests=OFF |
+-----------------------------------------------------------------+-----------------------------------------------+
| Build the documentation | -DBuild_Documentation=ON |
+-----------------------------------------------------------------+-----------------------------------------------+

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.. _issues:
Reporting issues
****************
Please report all problems and bugs directly at the github issue page
`<https://github.com/TRIQS/app4triqs/issues>`_. In order to make it easier for us
to solve the issue please follow these guidelines:
#. In all cases specify which version of the application you are using. You can
find the version number in the file :file:`CMakeLists.txt` at the root of the
application sources.
#. If you have a problem during the installation, give us information about
your operating system and the compiler you are using. Include the outputs of
the ``cmake`` and ``make`` commands as well as the ``CMakeCache.txt`` file
which is in the build directory. Please include these outputs in a
`gist <http://gist.github.com/>`_ file referenced in the issue.
#. If you are experiencing a problem during the execution of the application, provide
a script which allows to quickly reproduce the problem.
Thanks!

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# -*- coding: utf-8 -*-
"""
sphinxcontirb.autorun
~~~~~~~~~~~~~~~~~~~~~~
Run the code and insert stdout after the code block.
"""
import os
from subprocess import PIPE, Popen
from docutils import nodes
from docutils.parsers.rst import Directive, directives
from sphinx.errors import SphinxError
from sphinx_autorun import version
__version__ = version.version
class RunBlockError(SphinxError):
category = 'runblock error'
class AutoRun(object):
here = os.path.abspath(__file__)
pycon = os.path.join(os.path.dirname(here), 'pycon.py')
config = {
'pycon': 'python ' + pycon,
'pycon_prefix_chars': 4,
'pycon_show_source': False,
'console': 'bash',
'console_prefix_chars': 1,
}
@classmethod
def builder_init(cls, app):
cls.config.update(app.builder.config.autorun_languages)
class RunBlock(Directive):
has_content = True
required_arguments = 1
optional_arguments = 0
final_argument_whitespace = False
option_spec = {
'linenos': directives.flag,
}
def run(self):
config = AutoRun.config
language = self.arguments[0]
if language not in config:
raise RunBlockError('Unknown language %s' % language)
# Get configuration values for the language
args = config[language].split()
input_encoding = config.get(language+'_input_encoding', 'utf8')
output_encoding = config.get(language+'_output_encoding', 'utf8')
prefix_chars = config.get(language+'_prefix_chars', 0)
show_source = config.get(language+'_show_source', True)
# Build the code text
proc = Popen(args, bufsize=1, stdin=PIPE, stdout=PIPE, stderr=PIPE)
codelines = (line[prefix_chars:] for line in self.content)
code = u'\n'.join(codelines).encode(input_encoding)
# Run the code
stdout, stderr = proc.communicate(code)
# Process output
if stdout:
out = stdout.decode(output_encoding)
if stderr:
out = stderr.decode(output_encoding)
# Get the original code with prefixes
if show_source:
code = u'\n'.join(self.content)
code_out = u'\n'.join((code, out))
else:
code_out = out
literal = nodes.literal_block(code_out, code_out)
literal['language'] = language
literal['linenos'] = 'linenos' in self.options
return [literal]
def setup(app):
app.add_directive('runblock', RunBlock)
app.connect('builder-inited', AutoRun.builder_init)
app.add_config_value('autorun_languages', AutoRun.config, 'env')

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import sys
from code import InteractiveInterpreter
def main():
"""
Print lines of input along with output.
"""
source_lines = (line.rstrip() for line in sys.stdin)
console = InteractiveInterpreter()
source = ''
try:
while True:
source = next(source_lines)
# Allow the user to ignore specific lines of output.
if not source.endswith('# ignore'):
print('>>>', source)
more = console.runsource(source)
while more:
next_line = next(source_lines)
print('...', next_line)
source += '\n' + next_line
more = console.runsource(source)
except StopIteration:
if more:
print('... ')
more = console.runsource(source + '\n')
if __name__ == '__main__':
main()

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# coding: utf-8
# file generated by setuptools_scm
# don't change, don't track in version control
version = '1.1.1'

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import tempfile
# -*- coding: utf-8 -*-
# seems to be executed at the level of the conf.py
# so we need to link the lib at that place...
"""
"""
import os
import codecs
from os import path
from subprocess import Popen,PIPE
from docutils import nodes
from docutils.parsers.rst import Directive
from docutils.parsers.rst import directives
from sphinx.errors import SphinxError
class TriqsExampleError(SphinxError):
category = 'triqs_example error'
class TriqsExampleRun:
#here = os.path.abspath(__file__)
#pycon = os.path.join(os.path.dirname(here),'pycon.py')
config = dict(
)
@classmethod
def builder_init(cls,app):
#cls.config.update(app.builder.config.autorun_languages)
#cls.config.update(app.builder.config.autocompile_opts)
pass
class TriqsExample(Directive):
has_content = True
required_arguments = 1
optional_arguments = 0
final_argument_whitespace = False
option_spec = {
'linenos': directives.flag,
}
def run(self):
document = self.state.document
filename = self.arguments[0]
if not document.settings.file_insertion_enabled:
return [document.reporter.warning('File insertion disabled',
line=self.lineno)]
env = document.settings.env
if filename.startswith('/') or filename.startswith(os.sep):
rel_fn = filename[1:]
else:
docdir = path.dirname(env.doc2path(env.docname, base=None))
rel_fn = path.normpath(path.join(docdir, filename))
try:
fn = path.join(env.srcdir, rel_fn)
except UnicodeDecodeError:
# the source directory is a bytestring with non-ASCII characters;
# let's try to encode the rel_fn in the file system encoding
rel_fn = rel_fn.encode(sys.getfilesystemencoding())
fn = path.join(env.srcdir, rel_fn)
encoding = self.options.get('encoding', env.config.source_encoding)
try:
f = codecs.open(fn, 'rU', encoding)
lines = f.readlines()
f.close()
except (IOError, OSError):
return [document.reporter.warning(
'Include file %r not found or reading it failed' % filename,
line=self.lineno)]
except UnicodeError:
return [document.reporter.warning(
'Encoding %r used for reading included file %r seems to '
'be wrong, try giving an :encoding: option' %
(encoding, filename))]
config = TriqsExampleRun.config
# Get configuration values for the language
input_encoding = 'utf8' #config.get(language+'_input_encoding','ascii')
output_encoding = 'utf8' #config.get(language+'_output_encoding','ascii')
show_source = True
# Build the code text
code = ''.join(lines).strip()
filename_clean = filename.rsplit('.',1)[0]
if filename_clean.startswith('./') : filename_clean = filename_clean[2:]
#print "Running the example ....",filename_clean
#print "Root ?", env.doc2path(env.docname, base=None)
import subprocess as S
error = True
try :
stdout =''
#resout = S.check_output("./example_bin/doc_%s"%(filename_clean) ,stderr=S.STDOUT,shell=True)
resout = S.check_output("./%s/doc_%s"%(docdir,filename_clean) ,stderr=S.STDOUT,shell=True)
if resout :
stdout = '---------- Result is -------\n' + resout.strip()
error = False
except S.CalledProcessError as E :
stdout ='---------- RunTime error -------\n'
stdout += E.output
# Process output
if stdout:
stdout = stdout.decode(output_encoding,'ignore')
out = ''.join(stdout).decode(output_encoding)
else:
out = '' #.join(stderr).decode(output_encoding)
# Get the original code with prefixes
code_out = '\n'.join((code,out))
if error : # report on console
print(" Error in processing ")
print(code_out)
literal = nodes.literal_block(code_out,code_out)
literal['language'] = 'c'
literal['linenos'] = 'linenos' in self.options
return [literal]
def setup(app):
app.add_directive('triqs_example', TriqsExample)
app.connect('builder-inited',TriqsExampleRun.builder_init)

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{#
layout.html
~~~~~~~~~~~
TRIQS layout template heavily based on the sphinxdoc theme.
:copyright: Copyright 2013 by the TRIQS team.
:copyright: Copyright 2007-2013 by the Sphinx team.
:license: BSD, see LICENSE for details.
#}
{%- extends "basic/layout.html" %}
{# put the sidebar before the body #}
{% block sidebar1 %}{{ sidebar() }}{% endblock %}
{% block sidebar2 %}{% endblock %}
{% block extrahead %}
<link href='https://fonts.googleapis.com/css?family=Open+Sans:300,400,700' rel='stylesheet' type='text/css'>
<script src="{{ pathto('_static/cufon-yui.js',1) }}" type="text/javascript"></script>
<script src="{{ pathto('_static/spaceman.cufonfonts.js',1) }}" type="text/javascript"></script>
<script type="text/javascript">
Cufon.replace('.triqs', { fontFamily: 'spaceman', hover: true });
</script>
{{ super() }}
{%- if not embedded %}
<style type="text/css">
table.right { float: right; margin-left: 20px; }
table.right td { border: 1px solid #ccc; }
{% if pagename == 'index' %}
.related { display: none; }
{% endif %}
</style>
{%- endif %}
{% endblock %}
{% block rootrellink %}
<li><a href="{{ pathto('index') }}">Home</a> &raquo;</li>
{% endblock %}
{% block header %}
<div class="pageheader">
<ul>
{% for header_link in header_links %}
<li><a href="{{ pathto(header_link[1]) }}">{{ header_link[0] }}</a></li>
{% endfor %}
</ul>
<div>
<h1 style="padding:0; margin: 10px 0 0 0;"><a class="triqs" href="{{ pathto('index') }}">{{ header_title }}</a></h1>
<span style="font-size: 14px; margin: 0px; padding: 0px;">{{ header_subtitle }}</span>
</div>
</div>
{% endblock %}

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/*
* sphinx13.css
* ~~~~~~~~~~~~
*
* Sphinx stylesheet -- sphinx13 theme.
*
* :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
@import url("basic.css");
/* -- page layout ----------------------------------------------------------- */
body {
font-family: 'Open Sans', 'Lucida Grande', 'Lucida Sans Unicode', 'Geneva',
'Verdana', sans-serif;
font-size: 14px;
text-align: center;
background-image: url(bodybg.png);
color: black;
padding: 0;
border-right: 1px solid #0a507a;
border-left: 1px solid #0a507a;
margin: 0 auto;
min-width: 780px;
max-width: 1080px;
}
.red{
color: red
}
.blue{
color: blue
}
.green{
color: green
}
.param{
color: blue
}
a.triqs {
color: #073958;
text-decoration: none;
}
a.triqs:hover {
color: #0a527f;
text-decoration: none;
}
.pageheader {
background-color: #dcdcdc;
text-align: left;
padding: 10px 15px;
color: #073958;
border: none;
}
.pageheader ul {
float: right;
color: #073958;
list-style-type: none;
padding-left: 0;
margin-top: 22px;
margin-right: 10px;
}
.pageheader li {
float: left;
margin: 0 0 0 10px;
}
.pageheader li a {
padding: 8px 12px;
color: #073958;
text-shadow: none;
}
.pageheader li a:hover {
background-color: #f9f9f0;
color: #0a507a;
text-shadow: none;
}
div.document {
background-color: white;
text-align: left;
}
div.bodywrapper {
margin: 0 240px 0 0;
border-right: 1px solid #0a507a;
}
div.body {
margin: 0;
padding: 0.5em 20px 20px 20px;
}
div.related {
font-size: 1em;
color: white;
}
div.related ul {
background-image: url(relbg.png);
height: 1.9em;
border-top: 1px solid #002e50;
border-bottom: 1px solid #002e50;
}
div.related ul li {
margin: 0 5px 0 0;
padding: 0;
float: left;
}
div.related ul li.right {
float: right;
margin-right: 5px;
}
div.related ul li a {
margin: 0;
padding: 0 5px 0 5px;
line-height: 1.75em;
color: #f9f9f0;
text-shadow: 0px 0px 1px rgba(0, 0, 0, 0.5);
}
div.related ul li a:hover {
color: white;
/*text-decoration: underline;*/
text-shadow: 0px 0px 1px rgba(255, 255, 255, 0.5);
}
div.sphinxsidebarwrapper {
position: relative;
top: 0px;
padding: 0;
}
div.sphinxsidebar {
margin: 0;
padding: 0 15px 15px 0;
width: 210px;
float: right;
font-size: 1em;
text-align: left;
}
div.sphinxsidebar .logo {
font-size: 1.8em;
color: #0A507A;
font-weight: 300;
text-align: center;
}
div.sphinxsidebar .logo img {
vertical-align: middle;
}
div.sphinxsidebar input {
border: 1px solid #aaa;
font-family: 'Open Sans', 'Lucida Grande', 'Lucida Sans Unicode', 'Geneva',
'Verdana', sans-serif;
font-size: 1em;
}
div.sphinxsidebar h3 {
font-size: 1.5em;
border-top: 1px solid #0a507a;
margin-top: 1em;
margin-bottom: 0.5em;
padding-top: 0.5em;
}
div.sphinxsidebar h4 {
font-size: 1.2em;
margin-bottom: 0;
}
div.sphinxsidebar h3, div.sphinxsidebar h4 {
margin-right: -15px;
margin-left: -15px;
padding-right: 14px;
padding-left: 14px;
color: #333;
font-weight: 300;
/*text-shadow: 0px 0px 0.5px rgba(0, 0, 0, 0.4);*/
}
div.sphinxsidebarwrapper > h3:first-child {
margin-top: 0.5em;
border: none;
}
div.sphinxsidebar h3 a {
color: #333;
}
div.sphinxsidebar ul {
color: #444;
margin-top: 7px;
padding: 0;
line-height: 130%;
}
div.sphinxsidebar ul ul {
margin-left: 20px;
list-style-image: url(listitem.png);
}
div.footer {
background-image: url(footerbg.png);
color: #ccc;
text-shadow: 0 0 .2px rgba(255, 255, 255, 0.8);
padding: 3px 8px 3px 0;
clear: both;
font-size: 0.8em;
text-align: right;
}
/* no need to make a visible link to Sphinx on the Sphinx page */
div.footer a {
color: #ccc;
}
/* -- body styles ----------------------------------------------------------- */
p {
margin: 0.8em 0 0.5em 0;
}
a {
color: #A2881D;
text-decoration: none;
}
a:hover {
color: #E1C13F;
}
div.body a {
text-decoration: underline;
}
h1 {
margin: 10px 0 0 0;
font-size: 2.4em;
color: #0A507A;
font-weight: 300;
}
h2 {
margin: 1.em 0 0.2em 0;
font-size: 1.5em;
font-weight: 300;
padding: 0;
color: #174967;
}
h3 {
margin: 1em 0 -0.3em 0;
font-size: 1.3em;
font-weight: 300;
}
div.body h1 a, div.body h2 a, div.body h3 a, div.body h4 a, div.body h5 a, div.body h6 a {
text-decoration: none;
}
div.body h1 a tt, div.body h2 a tt, div.body h3 a tt, div.body h4 a tt, div.body h5 a tt, div.body h6 a tt {
color: #0A507A !important;
font-size: inherit !important;
}
a.headerlink {
color: #0A507A !important;
font-size: 12px;
margin-left: 6px;
padding: 0 4px 0 4px;
text-decoration: none !important;
float: right;
}
a.headerlink:hover {
background-color: #ccc;
color: white!important;
}
cite, code, tt {
font-family: 'Consolas', 'DejaVu Sans Mono',
'Bitstream Vera Sans Mono', monospace;
font-size: 14px;
letter-spacing: -0.02em;
}
tt {
background-color: #f2f2f2;
border: 1px solid #ddd;
border-radius: 2px;
color: #333;
padding: 1px;
}
tt.descname, tt.descclassname, tt.xref {
border: 0;
}
hr {
border: 1px solid #abc;
margin: 2em;
}
a tt {
border: 0;
color: #a2881d;
}
a tt:hover {
color: #e1c13f;
}
pre {
font-family: 'Consolas', 'DejaVu Sans Mono',
'Bitstream Vera Sans Mono', monospace;
font-size: 13px;
letter-spacing: 0.015em;
line-height: 120%;
padding: 0.5em;
border: 1px solid #ccc;
border-radius: 2px;
background-color: #f8f8f8;
}
pre a {
color: inherit;
text-decoration: underline;
}
td.linenos pre {
padding: 0.5em 0;
}
div.quotebar {
background-color: #f8f8f8;
max-width: 250px;
float: right;
padding: 0px 7px;
border: 1px solid #ccc;
margin-left: 1em;
}
div.topic {
background-color: #f8f8f8;
}
table {
border-collapse: collapse;
margin: 0 -0.5em 0 -0.5em;
}
table td, table th {
padding: 0.2em 0.5em 0.2em 0.5em;
}
div.admonition, div.warning {
font-size: 0.9em;
margin: 1em 0 1em 0;
border: 1px solid #86989B;
border-radius: 2px;
background-color: #f7f7f7;
padding: 0;
}
div.admonition p, div.warning p {
margin: 0.5em 1em 0.5em 1em;
padding: 0;
}
div.admonition pre, div.warning pre {
margin: 0.4em 1em 0.4em 1em;
}
div.admonition p.admonition-title,
div.warning p.admonition-title {
margin-top: 1em;
padding-top: 0.5em;
font-weight: bold;
}
div.warning {
border: 1px solid #940000;
/* background-color: #FFCCCF;*/
}
div.warning p.admonition-title {
}
div.admonition ul, div.admonition ol,
div.warning ul, div.warning ol {
margin: 0.1em 0.5em 0.5em 3em;
padding: 0;
}
div.admonition .highlight, div.warning .highlight {
background-color: #f7f7f7;
}
.viewcode-back {
font-family: 'Open Sans', 'Lucida Grande', 'Lucida Sans Unicode', 'Geneva',
'Verdana', sans-serif;
}
div.viewcode-block:target {
background-color: #f4debf;
border-top: 1px solid #ac9;
border-bottom: 1px solid #ac9;
}
.my-code-block.std-ref {
color : red;
}
.cppbrief {
color: #C6792C;
font-style: oblique;
}
.cppsynopsis {
background-color: #E7EDF9;
/*font-family: 'Open Sans', 'Lucida Grande', 'Lucida Sans Unicode', 'Geneva', 'Verdana', sans-serif;*/
/*font-family: monospace; */
font-family: Verdana, Arial, Lucida Console;
font-size=80%;
/*font-style: oblique;*/
/* white-space: pre;*/
}

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[theme]
inherit = basic
stylesheet = triqs.css
pygments_style = sphinx

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# Configure the version of packaging files
configure_file(conda/meta.yaml.in conda/meta.yaml)
configure_file(conda/build.sh conda/build.sh COPYONLY)
configure_file(conda/conda_build_config.yaml conda/conda_build_config.yaml COPYONLY)
configure_file(TRIQS-app4triqs-foss-2021b.eb.in TRIQS-app4triqs-foss-2021b.eb)

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easyblock = 'CMakeMake'
name = 'TRIQS-app4triqs'
version = '@PROJECT_VERSION@'
homepage = 'https://triqs.github.io/app4triqs/'
description = """
PROVIDE HERE A DESCRIPTION OF YOUR APPLICATION
"""
docurls = ['https://triqs.github.io/app4triqs/%(version_major_minor)s.x/']
software_license = 'LicenseGPLv3'
toolchain = {'name': 'foss', 'version': '2021b'}
toolchainopts = {'pic': True, 'usempi': True}
source_urls = ['https://github.com/TRIQS/app4triqs/releases/download/%(version)s/']
sources = ['app4triqs-%(version)s.tar.gz']
checksums = ['PUT HERE THE SHA256 OF THE RELEASE TARBALL']
dependencies = [
('Python', '3.9.6'),
('SciPy-bundle', '2021.10'),
('Boost', '1.77.0'),
('Clang', '13.0.1'),
('Clang-Python-bindings', '13.0.1'),
('GMP', '6.2.1'),
('HDF5', '1.10.7'),
('Mako', '1.1.4'),
('TRIQS', '3.3.0'),
('NFFT', '3.5.2')
]
builddependencies = [
('CMake', '3.22.1')
]
separate_build_dir = True
runtest = 'test'
sanity_check_paths = {
'files': ['lib/libapp4triqs_c.a'],
'dirs': ['include/app4triqs', 'lib', 'share',
'lib/python%(pyshortver)s/site-packages/app4triqs'],
}
sanity_check_commands = ["python -c 'import app4triqs'"]
modextrapaths = {
'CPLUS_INCLUDE_PATH': 'include',
'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
'CMAKE_PREFIX_PATH': 'lib/cmake/app4triqs',
}
modextravars = {
'APP4TRIQS_ROOT': '%(installdir)s',
'APP4TRIQS_VERSION': '%(version)s',
}
moduleclass = 'phys'

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#!/usr/bin/env bash
mkdir build
cd build
# Openmpi Specific environment setup - Cf. https://github.com/conda-forge/libnetcdf-feedstock/pull/80
export OMPI_MCA_btl=self,tcp
export OMPI_MCA_plm=isolated
export OMPI_MCA_rmaps_base_oversubscribe=yes
export OMPI_MCA_btl_vader_single_copy_mechanism=none
mpiexec="mpiexec --allow-run-as-root"
source $PREFIX/share/triqs/triqsvars.sh
cmake \
-DCMAKE_INSTALL_PREFIX=$PREFIX \
-DCMAKE_BUILD_TYPE=Release \
..
make -j${CPU_COUNT} VERBOSE=1
CTEST_OUTPUT_ON_FAILURE=1 ctest
make install

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mpi:
- mpich
- openmpi

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{% set version = "@PROJECT_VERSION@" %}
package:
name: app4triqs
version: {{ version }}
source:
url: https://github.com/TRIQS/app4triqs/releases/download/{{ version }}/app4triqs-{{ version }}.tar.gz
sha256: PUT HERE THE SHA256 OF YOUR RELEASE TARBALL
build:
number: 0
skip: True # [win or py<30]
requirements:
build:
- cmake
- make
- {{ compiler('c') }}
- {{ compiler('cxx') }}
host:
- triqs {{ '.'.join(version.split('.')[:2]) }}
- boost-cpp
- hdf5
- {{ mpi }}
- libblas
- liblapack
- python
run:
- {{ pin_compatible("triqs", max_pin="x.x") }}
- boost-cpp
- hdf5
- {{ mpi }}
- libblas
- liblapack
- python
test:
commands:
- export OMPI_MCA_btl=self,tcp
- export OMPI_MCA_plm=isolated
- export OMPI_MCA_rmaps_base_oversubscribe=yes
- export OMPI_MCA_btl_vader_single_copy_mechanism=none
- export mpiexec="mpiexec --allow-run-as-root"
- python -c "import app4triqs"
about:
home: https://triqs.github.io/app4triqs
license: GPL-3.0-or-later
license_family: GPL
license_file: LICENSE.txt
summary: 'An application based on the TRIQS library'
extra:
recipe-maintainers:
- wentzell
- pgunn

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# Configure the version
configure_file(version.py.in version.py)
# All Python files. Copy them in the build dir to have a complete package for the tests.
file(GLOB_RECURSE python_sources RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.py)
file(GLOB_RECURSE wrap_generators RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *_desc.py)
list(REMOVE_ITEM python_sources "${wrap_generators}")
foreach(file ${python_sources})
configure_file(${file} ${file} COPYONLY)
endforeach()
# Install python files to proper location
set(PYTHON_LIB_DEST ${TRIQS_PYTHON_LIB_DEST_ROOT}/${PROJECT_NAME})
install(FILES ${CMAKE_CURRENT_BINARY_DIR}/version.py DESTINATION ${PYTHON_LIB_DEST})
install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} DESTINATION ${TRIQS_PYTHON_LIB_DEST_ROOT} FILES_MATCHING PATTERN "*.py" PATTERN "*_desc.py" EXCLUDE)
# Build and install any python modules
foreach(gen ${wrap_generators})
string(REPLACE "_desc.py" "" gen ${gen})
get_filename_component(module_name ${gen} NAME_WE)
get_filename_component(module_dir ${gen} DIRECTORY)
add_cpp2py_module(NAME ${module_name} DIRECTORY ${module_dir})
add_library(${PROJECT_NAME}::${module_name} ALIAS ${module_name})
target_link_libraries(${module_name} ${PROJECT_NAME}_c triqs_py)
install(TARGETS ${module_name} DESTINATION ${PYTHON_LIB_DEST}/${module_dir})
endforeach()

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################################################################################
#
# TRIQS: a Toolbox for Research in Interacting Quantum Systems
#
# Copyright (C) 2016-2018, N. Wentzell
# Copyright (C) 2018-2019, The Simons Foundation
# author: N. Wentzell
#
# TRIQS is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
# Foundation, either version 3 of the License, or (at your option) any later
# version.
#
# TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# TRIQS. If not, see <http://www.gnu.org/licenses/>.
#
################################################################################
r"""
DOC
"""
from .app4triqs_module import Toto, chain
__all__ = ['Toto', 'chain']

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# Generated automatically using the command :
# c++2py ../../c++/app4triqs/app4triqs.hpp -p --members_read_only -N app4triqs -a app4triqs -m app4triqs_module -o app4triqs_module --moduledoc="The app4triqs python module" -C triqs --cxxflags="-std=c++17" --target_file_only
from cpp2py.wrap_generator import *
# The module
module = module_(full_name = "app4triqs_module", doc = r"The app4triqs python module", app_name = "app4triqs")
# Imports
# Add here all includes
module.add_include("app4triqs/app4triqs.hpp")
# Add here anything to add in the C++ code at the start, e.g. namespace using
module.add_preamble("""
#include <cpp2py/converters/string.hpp>
using namespace app4triqs;
""")
# The class toto
c = class_(
py_type = "Toto", # name of the python class
c_type = "app4triqs::toto", # name of the C++ class
doc = r"""A very useful and important class""", # doc of the C++ class
hdf5 = True,
arithmetic = ("add_only"),
comparisons = "==",
serializable = "tuple"
)
c.add_constructor("""()""", doc = r"""""")
c.add_constructor("""(int i_)""", doc = r"""Construct from integer
Parameters
----------
i_
a scalar :math:`G(\tau)`""")
c.add_method("""int f (int u)""",
doc = r"""A simple function with :math:`G(\tau)`
Parameters
----------
u
Nothing useful""")
c.add_method("""std::string hdf5_format ()""",
is_static = True,
doc = r"""HDF5""")
c.add_property(name = "i",
getter = cfunction("int get_i ()"),
doc = r"""Simple accessor""")
module.add_class(c)
module.add_function ("int app4triqs::chain (int i, int j)", doc = r"""Chain digits of two integers
Parameters
----------
i
The first integer
j
The second integer
Returns
-------
out
An integer containing the digits of both i and j""")
module.generate_code()

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################################################################################
#
# TRIQS: a Toolbox for Research in Interacting Quantum Systems
#
# Copyright (C) 2016-2018, N. Wentzell
# Copyright (C) 2018-2019, Simons Foundation
# author: N. Wentzell
#
# TRIQS is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
# Foundation, either version 3 of the License, or (at your option) any later
# version.
#
# TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# TRIQS. If not, see <http://www.gnu.org/licenses/>.
#
################################################################################
version = "@PROJECT_VERSION@"
triqs_hash = "@TRIQS_GIT_HASH@"
@PROJECT_NAME@_hash = "@PROJECT_GIT_HASH@"
def show_version():
print("\nYou are using @PROJECT_NAME@ version %s\n"%version)
def show_git_hash():
print("\nYou are using @PROJECT_NAME@ git hash %s based on triqs git hash %s\n"%("@PROJECT_GIT_HASH@", triqs_hash))

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# Required python packages for this application (these should also be added to Dockerfile for Jenkins)
mako
numpy
scipy
# For documentation builds we additionaly require
#sphinx
#numpydoc
#nbsphinx
#sphinx_rtd_theme
#myst_parser
#linkify-it-py

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add_subdirectory(cmake)
if(NOT IS_SUBPROJECT
AND NOT CMAKE_INSTALL_PREFIX STREQUAL TRIQS_ROOT
AND NOT CMAKE_INSTALL_PREFIX STREQUAL "/usr"
AND NOT CMAKE_INSTALL_PREFIX STREQUAL "/usr/local"
)
if(PythonSupport)
set(EXPORT_PYTHON_PATH "export PYTHONPATH=${CMAKE_INSTALL_PREFIX}/${CPP2PY_PYTHON_LIB_DEST_ROOT}:$PYTHONPATH")
set(MODFILE_PYTHON_PATH "prepend-path PYTHONPATH $root/${CPP2PY_PYTHON_LIB_DEST_ROOT}")
endif()
configure_file(${PROJECT_NAME}.modulefile.in ${PROJECT_NAME}.modulefile @ONLY)
configure_file(${PROJECT_NAME}vars.sh.in ${PROJECT_NAME}vars.sh @ONLY)
install(
FILES
${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}.modulefile
${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}vars.sh
DESTINATION share/${PROJECT_NAME}
)
message(STATUS "*********************************************************************************")
message(STATUS "* Custom install Location. Use: ")
message(STATUS "* ")
message(STATUS "* source ${CMAKE_INSTALL_PREFIX}/share/${PROJECT_NAME}/${PROJECT_NAME}vars.sh ")
message(STATUS "* ")
message(STATUS "* to set up the environment variables ")
if(DEFINED ENV{MODULEPATH})
message(STATUS "* ")
message(STATUS "* Consider copying ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}.modulefile ")
message(STATUS "* into your environment module directories ")
endif()
message(STATUS "*********************************************************************************")
endif()

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#%Module1.0
#
# To be installed as ${MODULEPATH}/@PROJECT_NAME@/@PROJECT_VERSION@
set name @PROJECT_NAME@
set version @PROJECT_VERSION@
set root @CMAKE_INSTALL_PREFIX@
set git_hash @PROJECT_GIT_HASH@
set url "https://github.com/TRIQS/@PROJECT_NAME@"
set description "An example application using cpp2py and triqs."
module-whatis "$description"
proc ModulesHelp { } {
global description url version git_hash
puts stderr "Description: $description"
puts stderr "URL: $url"
puts stderr "Version: $version"
puts stderr "Git hash: $git_hash"
}
# You may need to edit the next line if the triqs module
# is installed under a different name in your setup.
prereq triqs/@TRIQS_VERSION@
# Only one version of @PROJECT_NAME@ can be loaded at a time
conflict $name
setenv @PROJECT_NAME@_ROOT $root
setenv @PROJECT_NAME@_VERSION $version
setenv @PROJECT_NAME@_GIT_HASH $git_hash
prepend-path PATH $root/bin
prepend-path CPLUS_INCLUDE_PATH $root/include
prepend-path LIBRARY_PATH $root/lib
prepend-path LD_LIBRARY_PATH $root/lib
prepend-path CMAKE_PREFIX_PATH $root
@MODFILE_PYTHON_PATH@

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# Source this in your environment.
export @PROJECT_NAME@_ROOT=@CMAKE_INSTALL_PREFIX@
export CPLUS_INCLUDE_PATH=@CMAKE_INSTALL_PREFIX@/include:$CPLUS_INCLUDE_PATH
export PATH=@CMAKE_INSTALL_PREFIX@/bin:$PATH
export LIBRARY_PATH=@CMAKE_INSTALL_FULL_LIBDIR@:$LIBRARY_PATH
export LD_LIBRARY_PATH=@CMAKE_INSTALL_FULL_LIBDIR@:$LD_LIBRARY_PATH
export CMAKE_PREFIX_PATH=@CMAKE_INSTALL_PREFIX@:$CMAKE_PREFIX_PATH
@EXPORT_PYTHON_PATH@

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configure_file(${PROJECT_NAME}-config.cmake.in ${PROJECT_NAME}-config.cmake @ONLY)
configure_file(${PROJECT_NAME}-config-version.cmake.in ${PROJECT_NAME}-config-version.cmake @ONLY)
install(
FILES
${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}-config.cmake
${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}-config-version.cmake
DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME}
)
install(EXPORT ${PROJECT_NAME}-targets NAMESPACE ${PROJECT_NAME}:: DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME})

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# Copyright Olivier Parcollet 2017.
# Distributed under the Boost Software License, Version 1.0.
# (See accompanying file LICENSE_1_0.txt or copy at
# http://www.boost.org/LICENSE_1_0.txt)
# This module looks for sphinx documentation tool
# and define a function that prepares the Makefile for sphinx-build
find_program(SPHINXBUILD_EXECUTABLE
NAMES sphinx-build
PATHS /usr/bin /opt/local/bin /usr/local/bin #opt/sphinx-doc/bin
PATH_SUFFIXES bin
)
if (NOT SPHINXBUILD_EXECUTABLE)
message(FATAL_ERROR "I cannot find sphinx to build the triqs documentation")
endif()
execute_process(
COMMAND "${SPHINXBUILD_EXECUTABLE}" --version
OUTPUT_VARIABLE SPHINXBUILD_VERSION
ERROR_VARIABLE SPHINXBUILD_VERSION
)
if (SPHINXBUILD_VERSION MATCHES "[Ss]phinx.* ([0-9]+\\.[0-9]+(\\.|b)[0-9]+)")
set (SPHINXBUILD_VERSION "${CMAKE_MATCH_1}")
endif()
if (SPHINXBUILD_VERSION VERSION_EQUAL 1.6.3)
message(FATAL_ERROR "sphinx-build found at ${SPHINXBUILD_EXECUTABLE} but version 1.6.3 has a bug. Upgrade sphinx.")
else()
message(STATUS "sphinx-build program found at ${SPHINXBUILD_EXECUTABLE} with version ${SPHINXBUILD_VERSION}")
endif ()
include(FindPackageHandleStandardArgs)
FIND_PACKAGE_HANDLE_STANDARD_ARGS(Sphinx DEFAULT_MSG SPHINXBUILD_EXECUTABLE)
mark_as_advanced( SPHINXBUILD_EXECUTABLE )

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set(PACKAGE_VERSION @PROJECT_VERSION@)
if (PACKAGE_FIND_VERSION VERSION_EQUAL PACKAGE_VERSION)
set(PACKAGE_VERSION_EXACT TRUE)
endif()
if (PACKAGE_FIND_VERSION VERSION_LESS PACKAGE_VERSION)
set(PACKAGE_VERSION_COMPATIBLE TRUE)
endif()
if (PACKAGE_FIND_VERSION VERSION_GREATER PACKAGE_VERSION)
set(PACKAGE_VERSION_UNSUITABLE TRUE)
endif()

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# This file allows other CMake Projects to find us
# We provide general project information
# and reestablish the exported CMake Targets
# Multiple inclusion guard
if(NOT @PROJECT_NAME@_FOUND)
set(@PROJECT_NAME@_FOUND TRUE)
set_property(GLOBAL PROPERTY @PROJECT_NAME@_FOUND TRUE)
# version
set(@PROJECT_NAME@_VERSION @PROJECT_VERSION@ CACHE STRING "@PROJECT_NAME@ version")
set(@PROJECT_NAME@_GIT_HASH @PROJECT_GIT_HASH@ CACHE STRING "@PROJECT_NAME@ git hash")
# Root of the installation
set(@PROJECT_NAME@_ROOT @CMAKE_INSTALL_PREFIX@ CACHE STRING "@PROJECT_NAME@ root directory")
## Find the target dependencies
#function(find_dep)
# get_property(${ARGV0}_FOUND GLOBAL PROPERTY ${ARGV0}_FOUND)
# if(NOT ${ARGV0}_FOUND)
# find_package(${ARGN} REQUIRED HINTS @CMAKE_INSTALL_PREFIX@)
# endif()
#endfunction()
#find_dep(depname 1.0)
# Include the exported targets of this project
include(@CMAKE_INSTALL_FULL_LIBDIR@/cmake/@PROJECT_NAME@/@PROJECT_NAME@-targets.cmake)
message(STATUS "Found @PROJECT_NAME@-config.cmake with version @PROJECT_VERSION@, hash = @PROJECT_GIT_HASH@, root = @CMAKE_INSTALL_PREFIX@")
# Was the Project built with Documentation?
set(@PROJECT_NAME@_WITH_DOCUMENTATION @Build_Documentation@ CACHE BOOL "Was @PROJECT_NAME@ build with documentation?")
# Was the Project built with PythonSupport?
set(@PROJECT_NAME@_WITH_PYTHON_SUPPORT @PythonSupport@ CACHE BOOL "Was @PROJECT_NAME@ build with python support?")
if(@PythonSupport@)
set(@PROJECT_NAME@_MODULE_DIR @CMAKE_INSTALL_PREFIX@/@CPP2PY_PYTHON_LIB_DEST_ROOT@ CACHE BOOL "The @PROJECT_NAME@ python module directory")
endif()
endif()

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# Copyright (c) 2019-2020 Simons Foundation
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You may obtain a copy of the License at
# https://www.gnu.org/licenses/gpl-3.0.txt
# Author: Nils Wentzell
# Recursively fetch all targets that the interface of a target depends upon
macro(get_all_interface_targets name target)
get_property(TARGET_LINK_LIBRARIES TARGET ${target} PROPERTY INTERFACE_LINK_LIBRARIES)
foreach(lib IN LISTS TARGET_LINK_LIBRARIES)
if(TARGET ${lib})
# Append to list
list(APPEND ${name}_INTERFACE_TARGETS ${lib})
# Recure into target dependencies
get_all_interface_targets(${name} ${lib})
endif()
endforeach()
endmacro()
# Extract the property from the target and recursively from all targets it depends upon
macro(get_property_recursive)
cmake_parse_arguments(get_property_recursive "" "TARGET" "PROPERTY" ${ARGN})
set(target ${get_property_recursive_TARGET})
set(property ${get_property_recursive_PROPERTY})
get_all_interface_targets(${target} ${target})
foreach(t IN LISTS ${target}_INTERFACE_TARGETS ITEMS ${target})
get_property(p TARGET ${t} PROPERTY ${property})
list(APPEND ${ARGV0} ${p})
endforeach()
# Clean duplicates and any occurance of '/usr/include' dirs
if(${ARGV0})
list(REMOVE_DUPLICATES ${ARGV0})
list(REMOVE_ITEM ${ARGV0} /usr/include)
endif()
endmacro()
# Recursively fetch all compiler flags attached to the interface of a target
macro(extract_flags)
cmake_parse_arguments(ARG "BUILD_INTERFACE" "" "" ${ARGN})
set(target ${ARGV0})
unset(${target}_CXXFLAGS)
unset(${target}_LDFLAGS)
get_property_recursive(opts TARGET ${target} PROPERTY INTERFACE_COMPILE_OPTIONS)
foreach(opt ${opts})
set(${target}_LDFLAGS "${${target}_LDFLAGS} ${opt}")
set(${target}_CXXFLAGS "${${target}_CXXFLAGS} ${opt}")
endforeach()
get_property_recursive(cxx_features TARGET ${target} PROPERTY INTERFACE_COMPILE_FEATURES)
if(cxx_std_23 IN_LIST cxx_features)
set(${target}_CXXFLAGS "${${target}_CXXFLAGS} -std=c++2b")
elseif(cxx_std_20 IN_LIST cxx_features)
set(${target}_CXXFLAGS "${${target}_CXXFLAGS} -std=c++20")
elseif(cxx_std_17 IN_LIST cxx_features)
set(${target}_CXXFLAGS "${${target}_CXXFLAGS} -std=c++17")
endif()
get_property_recursive(defs TARGET ${target} PROPERTY INTERFACE_COMPILE_DEFINITIONS)
foreach(def ${defs})
set(${target}_CXXFLAGS "${${target}_CXXFLAGS} -D${def}")
endforeach()
get_property_recursive(inc_dirs TARGET ${target} PROPERTY INTERFACE_INCLUDE_DIRECTORIES)
get_property_recursive(sys_inc_dirs TARGET ${target} PROPERTY INTERFACE_SYSTEM_INCLUDE_DIRECTORIES)
if(inc_dirs)
list(REMOVE_ITEM sys_inc_dirs ${inc_dirs})
endif()
foreach(dir ${inc_dirs})
set(${target}_CXXFLAGS "${${target}_CXXFLAGS} -I${dir}")
endforeach()
foreach(dir ${sys_inc_dirs})
set(${target}_CXXFLAGS "${${target}_CXXFLAGS} -isystem${dir}")
endforeach()
get_property_recursive(libs TARGET ${target} PROPERTY INTERFACE_LINK_LIBRARIES)
foreach(lib ${libs})
if(NOT TARGET ${lib} AND NOT IS_DIRECTORY ${lib})
set(${target}_LDFLAGS "${${target}_LDFLAGS} ${lib}")
endif()
endforeach()
# ==== We have to replace generator expressions explicitly ====
if(ARG_BUILD_INTERFACE)
string(REGEX REPLACE "\\$<BUILD_INTERFACE:([^ ]*)>" "\\1" ${target}_LDFLAGS "${${target}_LDFLAGS}")
string(REGEX REPLACE "\\$<BUILD_INTERFACE:([^ ]*)>" "\\1" ${target}_CXXFLAGS "${${target}_CXXFLAGS}")
else()
string(REGEX REPLACE "\\$<INSTALL_INTERFACE:([^ ]*)>" "\\1" ${target}_LDFLAGS "${${target}_LDFLAGS}")
string(REGEX REPLACE "\\$<INSTALL_INTERFACE:([^ ]*)>" "\\1" ${target}_CXXFLAGS "${${target}_CXXFLAGS}")
endif()
if(CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
string(REGEX REPLACE "\\$<\\$<CXX_COMPILER_ID:GNU>:([^ ]*)>" "\\1" ${target}_LDFLAGS "${${target}_LDFLAGS}")
string(REGEX REPLACE "\\$<\\$<CXX_COMPILER_ID:GNU>:([^ ]*)>" "\\1" ${target}_CXXFLAGS "${${target}_CXXFLAGS}")
elseif(CMAKE_CXX_COMPILER_ID STREQUAL "Clang")
string(REGEX REPLACE "\\$<\\$<CXX_COMPILER_ID:Clang>:([^ ]*)>" "\\1" ${target}_LDFLAGS "${${target}_LDFLAGS}")
string(REGEX REPLACE "\\$<\\$<CXX_COMPILER_ID:Clang>:([^ ]*)>" "\\1" ${target}_CXXFLAGS "${${target}_CXXFLAGS}")
elseif(CMAKE_CXX_COMPILER_ID STREQUAL "AppleClang")
string(REGEX REPLACE "\\$<\\$<CXX_COMPILER_ID:AppleClang>:([^ ]*)>" "\\1" ${target}_LDFLAGS "${${target}_LDFLAGS}")
string(REGEX REPLACE "\\$<\\$<CXX_COMPILER_ID:AppleClang>:([^ ]*)>" "\\1" ${target}_CXXFLAGS "${${target}_CXXFLAGS}")
endif()
# Remove all remaining generator expressions
string(REGEX REPLACE " [^ ]*\\$<[^ ]*:[^>]*>" "" ${target}_LDFLAGS "${${target}_LDFLAGS}")
string(REGEX REPLACE " [^ ]*\\$<[^ ]*:[^>]*>" "" ${target}_CXXFLAGS "${${target}_CXXFLAGS}")
# Filter out system directories from LDFLAGS and CXXFLAGS
string(REGEX REPLACE " -L/usr/lib " " " ${target}_LDFLAGS "${${target}_LDFLAGS}")
string(REGEX REPLACE " -I/usr/include " " " ${target}_CXXFLAGS "${${target}_CXXFLAGS}")
string(REGEX REPLACE " -isystem/usr/include " " " ${target}_CXXFLAGS "${${target}_CXXFLAGS}")
endmacro()

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#!/usr/bin/env python3
import sys
import os
import glob
if len(sys.argv) != 2:
print("Please pass the application name")
sys.exit()
app_name = str(sys.argv[1]).lower()
capital_name = app_name.upper()
# Move app4triqs directories if necessary
if os.path.isdir("c++/app4triqs"): os.rename("c++/app4triqs", "c++/" + app_name)
if os.path.isdir("python/app4triqs"): os.rename("python/app4triqs", "python/" + app_name)
# Ignore these files
ignore_lst = [".git/", "replace_and_rename.py", "squash_history.sh"]
# Find the root directory of app4triqs
app4triqs_root = os.path.abspath(os.path.dirname(__file__) + "/..")
# Blacklisted file-formats
fmt_blacklist = ['.png', '.h5', '.jpg', '.ico']
# Recurse over all subdirectories and files
for root, dirs, files in os.walk(app4triqs_root):
for fname in files:
fpath = os.path.join(root, fname)
if os.path.splitext(fname)[1] in fmt_blacklist:
continue
# Ignore certain files / directories
if any(it in fpath for it in ignore_lst): continue
if os.path.isfile(fpath):
# Rename files containing app4triqs in their filename
if "app4triqs" in fname:
new_fpath = os.path.join(root, fname.replace("app4triqs", app_name))
os.rename(fpath, new_fpath)
fpath = new_fpath
# Replace app4triqs and APP4TRIQS in all files
with open(fpath, 'r') as f:
s = f.read()
if "app4triqs" in s or "APP4TRIQS" in s:
with open(fpath, 'w') as f:
f.write(s.replace("app4triqs", app_name).replace("APP4TRIQS", capital_name))

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#!/usr/bin/env bash
git reset $(git commit-tree HEAD\^{tree} -m "Initialize project from github.com/triqs/app4triqs@$(git rev-parse --short HEAD)")
git merge --allow-unrelated-histories -s ours HEAD@{1} -m "Track app4triqs skeleton"
git remote rm origin
git remote add app4triqs_remote https://github.com/triqs/app4triqs

5
test/CMakeLists.txt Normal file
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add_subdirectory(c++)
if(PythonSupport)
add_subdirectory(python)
endif()

35
test/c++/CMakeLists.txt Normal file
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# Copy h5 files to binary dir
file(GLOB_RECURSE all_h5_ref_files RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.ref.h5)
foreach(file ${all_h5_ref_files})
configure_file(${file} ${file} COPYONLY)
endforeach()
# List of all tests
file(GLOB_RECURSE all_tests RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.cpp)
foreach(test ${all_tests})
get_filename_component(test_name ${test} NAME_WE)
get_filename_component(test_dir ${test} DIRECTORY)
add_executable(${test_name} ${test})
target_link_libraries(${test_name} ${PROJECT_NAME}::${PROJECT_NAME}_c ${PROJECT_NAME}_warnings gtest_main)
set_property(TARGET ${test_name} PROPERTY RUNTIME_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/${test_dir})
add_test(NAME ${test_name} COMMAND ${test_name} WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/${test_dir})
# Run clang-tidy if found
if(CLANG_TIDY_EXECUTABLE)
set_target_properties(${test_name} PROPERTIES CXX_CLANG_TIDY "${CLANG_TIDY_EXECUTABLE}")
endif()
# Run cppcheck if found
if(CPPCHECK_EXECUTABLE)
add_custom_command(
TARGET ${test_name}
COMMAND ${CPPCHECK_EXECUTABLE}
--enable=warning,style,performance,portability
--std=c++20
--template=gcc
--verbose
--force
--quiet
${CMAKE_CURRENT_SOURCE_DIR}/${test}
)
endif()
endforeach()

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test/c++/basic.cpp Normal file
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#include <triqs/test_tools/gfs.hpp>
#include <app4triqs/app4triqs.hpp>
using namespace app4triqs;
TEST(Toto, Add) { // NOLINT
toto a(0);
toto b(2);
auto c = a + b;
EXPECT_EQ(c, b); // NOLINT
}
TEST(Toto, H5) { // NOLINT
toto a(0);
{ // Local scope for file
h5::file f("f.h5", 'w');
h5_write(f, "a", a);
}
toto a2;
{
h5::file f("f.h5", 'a');
h5_read(f, "a", a2);
}
EXPECT_EQ(a, a2); // NOLINT
}

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test/python/Basic.py Normal file
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#!/usr/bin/env python
import unittest
from app4triqs import Toto, chain
from h5 import *
from triqs.utility import mpi
class test_toto(unittest.TestCase):
def test_add(self):
a=Toto(0)
b=Toto(2)
c=a+b
self.assertEqual(c, b)
def test_h5(self):
a=Toto(0)
with HDFArchive("f.h5",'w') as A:
A["a"] = a
with HDFArchive("f.h5",'r') as A:
a_read = A["a"]
self.assertEqual(a, a_read)
def test_mpi(self):
a=Toto(0)
if mpi.is_master_node():
a=Toto(1)
mpi.bcast(a)
self.assertEqual(a, Toto(1))
class test_chain(unittest.TestCase):
def test_chain(self):
i = 111
j = 222
ij = chain(i,j)
self.assertEqual(ij, 111222)
if __name__ == '__main__':
unittest.main()

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# Copy h5 files to binary dir
file(GLOB_RECURSE all_h5_ref_files RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.ref.h5)
foreach(file ${all_h5_ref_files})
configure_file(${file} ${file} COPYONLY)
endforeach()
# List of all tests
set(all_tests Basic)
foreach(test ${all_tests})
get_filename_component(test_name ${test} NAME_WE)
get_filename_component(test_dir ${test} DIRECTORY)
add_test(NAME Py_${test_name} COMMAND ${TRIQS_PYTHON_EXECUTABLE} ${CMAKE_CURRENT_SOURCE_DIR}/${test_dir}/${test_name}.py WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/${test_dir})
set_property(TEST Py_${test_name} APPEND PROPERTY ENVIRONMENT PYTHONPATH=${PROJECT_BINARY_DIR}/python:$ENV{PYTHONPATH} ${SANITIZER_RT_PRELOAD})
endforeach()