mirror of
https://github.com/triqs/dft_tools
synced 2024-12-25 13:53:40 +01:00
Implement mpi lib (1). Array, generic, base, vector
- Implement the basic structure of the mpi lib and specialization for arrays, basic types, std::vector - adapted the array class for the lazy mpi mechanism - pass tests on arrays : - scatter, gather on array<long,2> array<complex,2>, etc... - broadcast - several files for readibility - the std::vector coded but not tested. - generic mecanism implemented and tested (mpi_generic test) - added several tests for the mpi lib. - TODO : more tests, doc...
This commit is contained in:
Olivier Parcollet
parent
56820a9493
commit
38cfef4e9f
2
test/triqs/mpi/CMakeLists.txt
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2
test/triqs/mpi/CMakeLists.txt
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@ -0,0 +1,2 @@
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all_tests()
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70
test/triqs/mpi/mpi_array.cpp
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70
test/triqs/mpi/mpi_array.cpp
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/*******************************************************************************
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*
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* TRIQS: a Toolbox for Research in Interacting Quantum Systems
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*
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* Copyright (C) 2013 by O. Parcollet
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*
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* TRIQS is free software: you can redistribute it and/or modify it under the
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* terms of the GNU General Public License as published by the Free Software
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* Foundation, either version 3 of the License, or (at your option) any later
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* version.
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*
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* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
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* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
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* details.
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*
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* You should have received a copy of the GNU General Public License along with
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* TRIQS. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#include <iostream>
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#include <type_traits>
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#include <triqs/arrays.hpp>
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#include <triqs/mpi.hpp>
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#include <iostream>
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#include <fstream>
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#include <sstream>
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using namespace triqs;
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using namespace triqs::arrays;
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using namespace triqs::mpi;
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int main(int argc, char* argv[]) {
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mpi::environment env(argc, argv);
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mpi::communicator world;
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// using ARR = array<double,2>;
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using ARR = array<std::complex<double>, 2>;
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ARR A(7, 3), B, AA;
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clef::placeholder<0> i_;
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clef::placeholder<1> j_;
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A(i_, j_) << i_ + 10 * j_;
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B = mpi::scatter(A, world);
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ARR C = mpi::scatter(A, world);
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std::ofstream out("node" + std::to_string(world.rank()));
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out << " A = " << A << std::endl;
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out << " B = " << B << std::endl;
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out << " C = " << C << std::endl;
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B *= -1;
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AA() = 0;
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AA = mpi::gather(B, world);
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out << " AA = " << AA << std::endl;
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mpi::broadcast(AA, world);
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out << " cast AA = " << AA << std::endl;
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AA() = 0;
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AA = mpi::allgather(B, world);
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out << " AA = " << AA << std::endl;
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}
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97
test/triqs/mpi/mpi_generic.cpp
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97
test/triqs/mpi/mpi_generic.cpp
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/*******************************************************************************
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*
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* TRIQS: a Toolbox for Research in Interacting Quantum Systems
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*
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* Copyright (C) 2013 by O. Parcollet
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*
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* TRIQS is free software: you can redistribute it and/or modify it under the
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* terms of the GNU General Public License as published by the Free Software
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* Foundation, either version 3 of the License, or (at your option) any later
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* version.
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*
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* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
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* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
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* details.
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*
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* You should have received a copy of the GNU General Public License along with
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* TRIQS. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#include <iostream>
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#include <type_traits>
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#include <triqs/arrays.hpp>
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#include <triqs/mpi.hpp>
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#include <iostream>
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#include <fstream>
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#include <sstream>
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using namespace triqs;
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using namespace triqs::arrays;
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using namespace triqs::mpi;
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struct my_object {
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array<double, 1> a, b;
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TRIQS_MPI_IMPLEMENTED_AS_TUPLEVIEW;
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my_object() = default;
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my_object(int s) : a(s), b(s) {
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clef::placeholder<0> i_;
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a(i_) << i_;
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b(i_) << -i_;
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}
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// construction from the lazy is delegated to =
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template <typename Tag> my_object(mpi_lazy<Tag, my_object> x) : my_object() { operator=(x); }
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// assigment is almost done already...
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template <typename Tag> my_object &operator=(mpi_lazy<Tag, my_object> x) {
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return mpi_impl_tuple<my_object>::complete_operation(*this, x);
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}
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};
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// non intrusive
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auto view_as_tuple(my_object const &x) RETURN(std::tie(x.a, x.b));
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auto view_as_tuple(my_object &x) RETURN(std::tie(x.a, x.b));
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// --------------------------------------
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int main(int argc, char *argv[]) {
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mpi::environment env(argc, argv);
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mpi::communicator world;
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std::ofstream out("t2_node" + std::to_string(world.rank()));
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auto ob = my_object(10);
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mpi::broadcast(ob);
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out << " a = " << ob.a << std::endl;
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out << " b = " << ob.b << std::endl;
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auto ob2 = ob;
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// ok scatter all components
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ob2 = mpi::scatter(ob);
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out << " scattered a = " << ob2.a << std::endl;
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out << " scattered b = " << ob2.b << std::endl;
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ob2.a *= world.rank()+1; // change it a bit
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// now regroup...
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ob = mpi::gather(ob2);
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out << " gather a = " << ob.a << std::endl;
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out << " gather b = " << ob.b << std::endl;
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// allgather
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ob = mpi::allgather(ob2);
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out << " allgather a = " << ob.a << std::endl;
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out << " allgather b = " << ob.b << std::endl;
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out << "----------------------------"<< std::endl;
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}
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86
test/triqs/mpi/mpi_old_test.cpp
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86
test/triqs/mpi/mpi_old_test.cpp
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@ -0,0 +1,86 @@
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/*******************************************************************************
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*
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* TRIQS: a Toolbox for Research in Interacting Quantum Systems
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*
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* Copyright (C) 2014 by O. Parcollet
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*
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* TRIQS is free software: you can redistribute it and/or modify it under the
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* terms of the GNU General Public License as published by the Free Software
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* Foundation, either version 3 of the License, or (at your option) any later
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* version.
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*
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* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
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* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
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* details.
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*
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* You should have received a copy of the GNU General Public License along with
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* TRIQS. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#include <iostream>
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#include <type_traits>
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#include <triqs/arrays.hpp>
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#include <triqs/mpi.hpp>
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#include <iostream>
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#include <fstream>
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#include <sstream>
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using namespace triqs;
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using namespace triqs::arrays;
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using namespace triqs::mpi;
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int main(int argc, char *argv[]) {
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mpi::environment env(argc, argv);
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mpi::communicator world;
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// TO BE RETESTED:
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/*
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mpi::environment env(argc, argv);
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mpi::communicator world;
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array<long,2> A {{1,2}, {3,4}}, C(2,2);
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// boost mpi
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boost::mpi::reduce (world, A,C, std::c14::plus<>(),0);
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int s= world.size();
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if (world.rank() ==0) std::cout<<" C = "<<C<< " should be "<< std::endl << array<long,2>(s*A) <<std::endl;
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// triqs mpi
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C = A;
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mpi::reduce_in_place (world, C);
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if (world.rank() ==0) std::cout<<" C = "<<C<< " should be "<< std::endl << array<long,2>(s*A) <<std::endl;
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// test rvalue views
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C = A;
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mpi::reduce_in_place (world, C());
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if (world.rank() ==0) std::cout<<" C = "<<C<< " should be "<< std::endl << array<long,2>(s*A) <<std::endl;
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// more complex class
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auto x = S { { {1,2},{3,4}}, { 1,2,3,4}};
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mpi::reduce_in_place (world, x);
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if (world.rank() ==0) std::cout<<" S.x = "<<x.x<<" S.y = "<<x.y<<std::endl;
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// a simple number
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double y = 1+world.rank(), z=0;
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mpi::reduce(world,y,z);
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if (world.rank() ==0) std::cout<<" y = "<<y<< " should be "<< 1+world.rank()<<std::endl;
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if (world.rank() ==0) std::cout<<" z = "<<z<< " should be "<< s*(s+1)/2 <<std::endl;
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mpi::reduce_in_place(world,y);
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if (world.rank() ==0) std::cout<<" y = "<<y<< " should be "<< s*(s+1)/2 <<std::endl;
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mpi::broadcast(world,C);
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// reduced x,y,C, .... a variadic form
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mpi::reduce_in_place_v (world, x,y,C);
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// more complex object
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auto ca = array< array<int,1>, 1 > { array<int,1>{1,2}, array<int,1>{3,4}};
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auto cC = ca;
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mpi::reduce_in_place (world, cC);
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if (world.rank() ==0) std::cout<<" cC = "<<cC<< std::endl;
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*/
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return 0;
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}
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@ -21,7 +21,7 @@
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#include <iostream>
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#include <iostream>
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#include <type_traits>
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#include <type_traits>
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#include <triqs/arrays.hpp>
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#include <triqs/arrays.hpp>
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#include <triqs/utility/mpi.hpp>
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#include <triqs/utility/mpi1.hpp>
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#include <iostream>
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#include <iostream>
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#include <sstream>
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#include <sstream>
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@ -72,6 +72,9 @@ namespace triqs { namespace arrays {
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template<class RHS,class LHS> struct is_isp :
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template<class RHS,class LHS> struct is_isp :
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std::integral_constant<bool, std::is_base_of<Tag::indexmap_storage_pair,RHS>::value && (!is_scalar_for<RHS,LHS>::value) > {};
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std::integral_constant<bool, std::is_base_of<Tag::indexmap_storage_pair,RHS>::value && (!is_scalar_for<RHS,LHS>::value) > {};
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/// RHS is special type that defines its own specialization of assign
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template<class RHS,class LHS> struct is_special : std::false_type {};
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#define TRIQS_REJECT_ASSIGN_TO_CONST \
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#define TRIQS_REJECT_ASSIGN_TO_CONST \
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static_assert( (!std::is_const<typename LHS::value_type>::value ), "Assignment : The value type of the LHS is const and cannot be assigned to !");
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static_assert( (!std::is_const<typename LHS::value_type>::value ), "Assignment : The value type of the LHS is const and cannot be assigned to !");
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#define TRIQS_REJECT_MATRIX_COMPOUND_MUL_DIV_NON_SCALAR\
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#define TRIQS_REJECT_MATRIX_COMPOUND_MUL_DIV_NON_SCALAR\
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@ -106,7 +109,7 @@ namespace triqs { namespace arrays {
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// ----------------- assignment for expressions RHS --------------------------------------------------
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// ----------------- assignment for expressions RHS --------------------------------------------------
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template<typename LHS, typename RHS, char OP>
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template<typename LHS, typename RHS, char OP>
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struct impl<LHS,RHS,OP, ENABLE_IFC( ImmutableCuboidArray<RHS>::value && (!is_scalar_for<RHS,LHS>::value) && (!is_isp<RHS,LHS>::value)) > {
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struct impl<LHS,RHS,OP, ENABLE_IFC( ImmutableCuboidArray<RHS>::value && (!is_scalar_for<RHS,LHS>::value) && (!is_isp<RHS,LHS>::value)&& (!is_special<LHS,RHS>::value)) > {
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TRIQS_REJECT_ASSIGN_TO_CONST;
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TRIQS_REJECT_ASSIGN_TO_CONST;
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TRIQS_REJECT_MATRIX_COMPOUND_MUL_DIV_NON_SCALAR;
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TRIQS_REJECT_MATRIX_COMPOUND_MUL_DIV_NON_SCALAR;
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typedef typename LHS::value_type value_type;
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typedef typename LHS::value_type value_type;
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29
triqs/mpi.hpp
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29
triqs/mpi.hpp
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/*******************************************************************************
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*
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* TRIQS: a Toolbox for Research in Interacting Quantum Systems
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|
*
|
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* Copyright (C) 2014 by O. Parcollet
|
||||||
|
*
|
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|
* TRIQS is free software: you can redistribute it and/or modify it under the
|
||||||
|
* terms of the GNU General Public License as published by the Free Software
|
||||||
|
* Foundation, either version 3 of the License, or (at your option) any later
|
||||||
|
* version.
|
||||||
|
*
|
||||||
|
* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||||
|
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
|
||||||
|
* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
|
||||||
|
* details.
|
||||||
|
*
|
||||||
|
* You should have received a copy of the GNU General Public License along with
|
||||||
|
* TRIQS. If not, see <http://www.gnu.org/licenses/>.
|
||||||
|
*
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******************************************************************************/
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#ifndef TRIQS_MPI_H
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#define TRIQS_MPI_H
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#include "./mpi/arrays.hpp"
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#include "./mpi/vector.hpp"
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#include "./mpi/generic.hpp"
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#endif
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197
triqs/mpi/arrays.hpp
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197
triqs/mpi/arrays.hpp
Normal file
@ -0,0 +1,197 @@
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/*******************************************************************************
|
||||||
|
*
|
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|
* TRIQS: a Toolbox for Research in Interacting Quantum Systems
|
||||||
|
*
|
||||||
|
* Copyright (C) 2014 by O. Parcollet
|
||||||
|
*
|
||||||
|
* TRIQS is free software: you can redistribute it and/or modify it under the
|
||||||
|
* terms of the GNU General Public License as published by the Free Software
|
||||||
|
* Foundation, either version 3 of the License, or (at your option) any later
|
||||||
|
* version.
|
||||||
|
*
|
||||||
|
* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||||
|
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
|
||||||
|
* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
|
||||||
|
* details.
|
||||||
|
*
|
||||||
|
* You should have received a copy of the GNU General Public License along with
|
||||||
|
* TRIQS. If not, see <http://www.gnu.org/licenses/>.
|
||||||
|
*
|
||||||
|
******************************************************************************/
|
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#pragma once
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#include <triqs/arrays.hpp>
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#include "./base.hpp"
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namespace triqs {
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namespace mpi {
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|
//--------------------------------------------------------------------------------------------------------
|
||||||
|
// The lazy ref made by scatter and co.
|
||||||
|
// Differs from the generic one in that it can make a domain of the (target) array
|
||||||
|
template <typename Tag, typename A> struct mpi_lazy_array {
|
||||||
|
A const &ref;
|
||||||
|
int root;
|
||||||
|
communicator c;
|
||||||
|
|
||||||
|
using domain_type = typename A::domain_type;
|
||||||
|
|
||||||
|
/// compute the array domain of the target array
|
||||||
|
domain_type domain() const {
|
||||||
|
auto dims = ref.shape();
|
||||||
|
long slow_size = first_dim(ref);
|
||||||
|
|
||||||
|
if (std::is_same<Tag, tag::scatter>::value) {
|
||||||
|
dims[0] = slice_length(slow_size - 1, c, c.rank());
|
||||||
|
}
|
||||||
|
|
||||||
|
if (std::is_same<Tag, tag::gather>::value) {
|
||||||
|
long slow_size_total = 0;
|
||||||
|
MPI_Reduce(&slow_size, &slow_size_total, 1, mpi_datatype<long>::invoke(), MPI_SUM, root, c.get());
|
||||||
|
dims[0] = slow_size_total;
|
||||||
|
// valid only on root
|
||||||
|
}
|
||||||
|
|
||||||
|
if (std::is_same<Tag, tag::allgather>::value) {
|
||||||
|
long slow_size_total = 0;
|
||||||
|
MPI_Allreduce(&slow_size, &slow_size_total, 1, mpi_datatype<long>::invoke(), MPI_SUM, c.get());
|
||||||
|
dims[0] = slow_size_total;
|
||||||
|
// in this case, it is valid on all nodes
|
||||||
|
}
|
||||||
|
|
||||||
|
return domain_type{dims};
|
||||||
|
}
|
||||||
|
|
||||||
|
};
|
||||||
|
|
||||||
|
//--------------------------------------------------------------------------------------------------------
|
||||||
|
|
||||||
|
// When value_type is a basic type, we can directly call the C API
|
||||||
|
template <typename A> class mpi_impl_triqs_arrays {
|
||||||
|
|
||||||
|
static MPI_Datatype D() { return mpi_datatype<typename A::value_type>::invoke(); }
|
||||||
|
|
||||||
|
static void check_is_contiguous(A const &a) {
|
||||||
|
if (!has_contiguous_data(a)) TRIQS_RUNTIME_ERROR << "Non contiguous view in mpi_reduce_in_place";
|
||||||
|
}
|
||||||
|
|
||||||
|
public:
|
||||||
|
|
||||||
|
//---------
|
||||||
|
static void reduce_in_place(communicator c, A &a, int root) {
|
||||||
|
check_is_contiguous(a);
|
||||||
|
// assume arrays have the same size on all nodes...
|
||||||
|
MPI_Reduce((c.rank() == root ? MPI_IN_PLACE : a), a.data_start(), a.domain().number_of_elements(), D(), MPI_SUM, root, c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
//---------
|
||||||
|
static void allreduce_in_place(communicator c, A &a, int root) {
|
||||||
|
check_is_contiguous(a);
|
||||||
|
// assume arrays have the same size on all nodes...
|
||||||
|
MPI_Allreduce(MPI_IN_PLACE, a.data_start(), a.domain().number_of_elements(), D(), MPI_SUM, root, c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
//---------
|
||||||
|
static void broadcast(communicator c, A &a, int root) {
|
||||||
|
check_is_contiguous(a);
|
||||||
|
auto sh = a.shape();
|
||||||
|
MPI_Bcast(&sh[0], sh.size(), mpi_datatype<typename decltype(sh)::value_type>::invoke(), root, c.get());
|
||||||
|
if (c.rank() != root) a.resize(sh);
|
||||||
|
MPI_Bcast(a.data_start(), a.domain().number_of_elements(), D(), root, c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
//---------
|
||||||
|
template <typename Tag> static mpi_lazy_array<Tag, A> invoke(Tag, communicator c, A const &a, int root) {
|
||||||
|
check_is_contiguous(a);
|
||||||
|
return {a, root, c};
|
||||||
|
}
|
||||||
|
|
||||||
|
};
|
||||||
|
|
||||||
|
template <typename A>
|
||||||
|
struct mpi_impl<A, std14::enable_if_t<triqs::arrays::is_amv_value_or_view_class<A>::value>> : mpi_impl_triqs_arrays<A> {};
|
||||||
|
|
||||||
|
} // mpi namespace
|
||||||
|
|
||||||
|
//------------------------------- Delegation of the assign operator of the array class -------------
|
||||||
|
|
||||||
|
namespace arrays {
|
||||||
|
|
||||||
|
// mpi_lazy_array model ImmutableCuboidArray
|
||||||
|
template <typename Tag, typename A> struct ImmutableCuboidArray<mpi::mpi_lazy_array<Tag, A>> : ImmutableCuboidArray<A> {};
|
||||||
|
|
||||||
|
namespace assignment {
|
||||||
|
|
||||||
|
template <typename LHS, typename Tag, typename A> struct is_special<LHS, mpi::mpi_lazy_array<Tag, A>> : std::true_type {};
|
||||||
|
|
||||||
|
// assignment delegation
|
||||||
|
template <typename LHS, typename A, typename Tag> struct impl<LHS, mpi::mpi_lazy_array<Tag, A>, 'E', void> {
|
||||||
|
|
||||||
|
using laz_t = mpi::mpi_lazy_array<Tag, A>;
|
||||||
|
LHS &lhs;
|
||||||
|
laz_t laz;
|
||||||
|
|
||||||
|
impl(LHS &lhs_, laz_t laz_) : lhs(lhs_), laz(laz_) {}
|
||||||
|
|
||||||
|
void invoke() { _invoke(Tag()); }
|
||||||
|
|
||||||
|
private:
|
||||||
|
static MPI_Datatype D() { return mpi::mpi_datatype<typename A::value_type>::invoke(); }
|
||||||
|
|
||||||
|
//---------------------------------
|
||||||
|
void _invoke(triqs::mpi::tag::scatter) {
|
||||||
|
lhs.resize(laz.domain());
|
||||||
|
|
||||||
|
auto c = laz.c;
|
||||||
|
auto slow_size = first_dim(laz.ref);
|
||||||
|
auto slow_stride = laz.ref.indexmap().strides()[0];
|
||||||
|
auto sendcounts = std::vector<int>(c.size());
|
||||||
|
auto displs = std::vector<int>(c.size() + 1, 0);
|
||||||
|
int recvcount = slice_length(slow_size - 1, c, c.rank()) * slow_stride;
|
||||||
|
|
||||||
|
for (int r = 0; r < c.size(); ++r) {
|
||||||
|
sendcounts[r] = slice_length(slow_size - 1, c, r) * slow_stride;
|
||||||
|
displs[r + 1] = sendcounts[r] + displs[r];
|
||||||
|
}
|
||||||
|
|
||||||
|
MPI_Scatterv((void *)laz.ref.data_start(), &sendcounts[0], &displs[0], D(), (void *)lhs.data_start(), recvcount, D(),
|
||||||
|
laz.root, c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
//---------------------------------
|
||||||
|
void _invoke(triqs::mpi::tag::gather) {
|
||||||
|
lhs.resize(laz.domain());
|
||||||
|
|
||||||
|
auto c = laz.c;
|
||||||
|
auto recvcounts = std::vector<int>(c.size());
|
||||||
|
auto displs = std::vector<int>(c.size() + 1, 0);
|
||||||
|
int sendcount = laz.ref.domain().number_of_elements();
|
||||||
|
|
||||||
|
auto mpi_ty = mpi::mpi_datatype<int>::invoke();
|
||||||
|
MPI_Gather(&sendcount, 1, mpi_ty, &recvcounts[0], 1, mpi_ty, laz.root, c.get());
|
||||||
|
for (int r = 0; r < c.size(); ++r) displs[r + 1] = recvcounts[r] + displs[r];
|
||||||
|
|
||||||
|
MPI_Gatherv((void *)laz.ref.data_start(), sendcount, D(), (void *)lhs.data_start(), &recvcounts[0], &displs[0], D(), laz.root,
|
||||||
|
c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
//---------------------------------
|
||||||
|
void _invoke(triqs::mpi::tag::allgather) {
|
||||||
|
lhs.resize(laz.domain());
|
||||||
|
|
||||||
|
// almost the same preparation as gather, except that the recvcounts are ALL gathered...
|
||||||
|
auto c = laz.c;
|
||||||
|
auto recvcounts = std::vector<int>(c.size());
|
||||||
|
auto displs = std::vector<int>(c.size() + 1, 0);
|
||||||
|
int sendcount = laz.ref.domain().number_of_elements();
|
||||||
|
|
||||||
|
auto mpi_ty = mpi::mpi_datatype<int>::invoke();
|
||||||
|
MPI_Allgather(&sendcount, 1, mpi_ty, &recvcounts[0], 1, mpi_ty, c.get());
|
||||||
|
for (int r = 0; r < c.size(); ++r) displs[r + 1] = recvcounts[r] + displs[r];
|
||||||
|
|
||||||
|
MPI_Allgatherv((void *)laz.ref.data_start(), sendcount, D(), (void *)lhs.data_start(), &recvcounts[0], &displs[0], D(),
|
||||||
|
c.get());
|
||||||
|
}
|
||||||
|
};
|
||||||
|
}
|
||||||
|
} //namespace arrays
|
||||||
|
} // namespace triqs
|
||||||
148
triqs/mpi/base.hpp
Normal file
148
triqs/mpi/base.hpp
Normal file
@ -0,0 +1,148 @@
|
|||||||
|
/*******************************************************************************
|
||||||
|
*
|
||||||
|
* TRIQS: a Toolbox for Research in Interacting Quantum Systems
|
||||||
|
*
|
||||||
|
* Copyright (C) 2014 by O. Parcollet
|
||||||
|
*
|
||||||
|
* TRIQS is free software: you can redistribute it and/or modify it under the
|
||||||
|
* terms of the GNU General Public License as published by the Free Software
|
||||||
|
* Foundation, either version 3 of the License, or (at your option) any later
|
||||||
|
* version.
|
||||||
|
*
|
||||||
|
* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||||
|
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
|
||||||
|
* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
|
||||||
|
* details.
|
||||||
|
*
|
||||||
|
* You should have received a copy of the GNU General Public License along with
|
||||||
|
* TRIQS. If not, see <http://www.gnu.org/licenses/>.
|
||||||
|
*
|
||||||
|
******************************************************************************/
|
||||||
|
#pragma once
|
||||||
|
#include <triqs/utility/c14.hpp>
|
||||||
|
//#include <triqs/utility/tuple_tools.hpp>
|
||||||
|
#include <mpi.h>
|
||||||
|
|
||||||
|
namespace triqs {
|
||||||
|
namespace mpi {
|
||||||
|
|
||||||
|
/// Environment
|
||||||
|
struct environment {
|
||||||
|
environment(int argc, char *argv[]) { MPI_Init(&argc, &argv); }
|
||||||
|
~environment() { MPI_Finalize(); }
|
||||||
|
};
|
||||||
|
|
||||||
|
/// The communicator. Todo : add more constructors.
|
||||||
|
class communicator {
|
||||||
|
MPI_Comm _com = MPI_COMM_WORLD;
|
||||||
|
|
||||||
|
public:
|
||||||
|
communicator() = default;
|
||||||
|
|
||||||
|
MPI_Comm get() const { return _com; }
|
||||||
|
|
||||||
|
int rank() const {
|
||||||
|
int num;
|
||||||
|
MPI_Comm_rank(_com, &num);
|
||||||
|
return num;
|
||||||
|
}
|
||||||
|
|
||||||
|
int size() const {
|
||||||
|
int num;
|
||||||
|
MPI_Comm_size(_com, &num);
|
||||||
|
return num;
|
||||||
|
}
|
||||||
|
|
||||||
|
void barrier() const { MPI_Barrier(_com); }
|
||||||
|
};
|
||||||
|
|
||||||
|
/// a tag for each operation
|
||||||
|
namespace tag {
|
||||||
|
struct reduce {};
|
||||||
|
struct allreduce {};
|
||||||
|
struct scatter {};
|
||||||
|
struct gather {};
|
||||||
|
struct allgather {};
|
||||||
|
}
|
||||||
|
|
||||||
|
/// The implementation of mpi ops for each type
|
||||||
|
template <typename T, typename Enable = void> struct mpi_impl;
|
||||||
|
|
||||||
|
// ----------------------------------------
|
||||||
|
// ------- top level functions -------
|
||||||
|
// ----------------------------------------
|
||||||
|
|
||||||
|
// ----- functions that can be lazy -------
|
||||||
|
|
||||||
|
template <typename T>
|
||||||
|
AUTO_DECL reduce(T const &x, communicator c = {}, int root = 0) RETURN(mpi_impl<T>::invoke(tag::reduce(), c, x, root));
|
||||||
|
template <typename T>
|
||||||
|
AUTO_DECL scatter(T const &x, communicator c = {}, int root = 0) RETURN(mpi_impl<T>::invoke(tag::scatter(), c, x, root));
|
||||||
|
template <typename T>
|
||||||
|
AUTO_DECL gather(T const &x, communicator c = {}, int root = 0) RETURN(mpi_impl<T>::invoke(tag::gather(), c, x, root));
|
||||||
|
template <typename T>
|
||||||
|
AUTO_DECL allreduce(T const &x, communicator c = {}, int root = 0) RETURN(mpi_impl<T>::invoke(tag::allreduce(), c, x, root));
|
||||||
|
template <typename T>
|
||||||
|
AUTO_DECL allgather(T const &x, communicator c = {}, int root = 0) RETURN(mpi_impl<T>::invoke(tag::allgather(), c, x, root));
|
||||||
|
|
||||||
|
// ----- functions that cannot be lazy -------
|
||||||
|
|
||||||
|
template <typename T> void reduce_in_place(T &x, communicator c = {}, int root = 0) { mpi_impl<T>::reduce_in_place(c, x, root); }
|
||||||
|
template <typename T> void broadcast(T &x, communicator c = {}, int root = 0) { mpi_impl<T>::broadcast(c, x, root); }
|
||||||
|
|
||||||
|
// transformation type -> mpi types
|
||||||
|
template <class T> struct mpi_datatype;
|
||||||
|
#define D(T, MPI_TY) \
|
||||||
|
template <> struct mpi_datatype<T> { \
|
||||||
|
static MPI_Datatype invoke() { return MPI_TY; } \
|
||||||
|
};
|
||||||
|
D(int, MPI_INT) D(long, MPI_LONG) D(double, MPI_DOUBLE) D(float, MPI_FLOAT) D(std::complex<double>, MPI_DOUBLE_COMPLEX);
|
||||||
|
D(unsigned long, MPI_UNSIGNED_LONG);
|
||||||
|
#undef D
|
||||||
|
|
||||||
|
/** ------------------------------------------------------------
|
||||||
|
* basic types
|
||||||
|
* ---------------------------------------------------------- **/
|
||||||
|
|
||||||
|
template <typename T> struct mpi_impl_basic {
|
||||||
|
|
||||||
|
static MPI_Datatype D() { return mpi_datatype<T>::invoke(); }
|
||||||
|
|
||||||
|
static T invoke(tag::reduce, communicator c, T a, int root) {
|
||||||
|
T b;
|
||||||
|
MPI_Reduce(&a, &b, 1, D(), MPI_SUM, root, c.get());
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
|
||||||
|
static T invoke(tag::allreduce, communicator c, T a, int root) {
|
||||||
|
T b;
|
||||||
|
MPI_Allreduce(&a, &b, 1, D(), MPI_SUM, root, c.get());
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
|
||||||
|
static void reduce_in_place(communicator c, T &a, int root) {
|
||||||
|
MPI_Reduce((c.rank() == root ? MPI_IN_PLACE : &a), &a, 1, D(), MPI_SUM, root, c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
static void allreduce_in_place(communicator c, T &a, int root) {
|
||||||
|
MPI_Allreduce(MPI_IN_PLACE, &a, 1, D(), MPI_SUM, root, c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
static void broadcast(communicator c, T &a, int root) { MPI_Bcast(&a, 1, D(), root, c.get()); }
|
||||||
|
};
|
||||||
|
|
||||||
|
// mpl_impl_basic is the mpi_impl<T> is T is a number (including complex)
|
||||||
|
template <typename T>
|
||||||
|
struct mpi_impl<T, std14::enable_if_t<std::is_arithmetic<T>::value || triqs::is_complex<T>::value>> : mpi_impl_basic<T> {};
|
||||||
|
|
||||||
|
//------------ Some helper function
|
||||||
|
inline long slice_length(size_t imax, communicator c, int r) {
|
||||||
|
auto imin = 0;
|
||||||
|
long j = (imax - imin + 1) / c.size();
|
||||||
|
long i = imax - imin + 1 - c.size() * j;
|
||||||
|
auto r_min = (r <= i - 1 ? imin + r * (j + 1) : imin + r * j + i);
|
||||||
|
auto r_max = (r <= i - 1 ? imin + (r + 1) * (j + 1) - 1 : imin + (r + 1) * j + i - 1);
|
||||||
|
return r_max - r_min + 1;
|
||||||
|
};
|
||||||
|
}
|
||||||
|
}
|
||||||
61
triqs/mpi/boost.hpp
Normal file
61
triqs/mpi/boost.hpp
Normal file
@ -0,0 +1,61 @@
|
|||||||
|
/*******************************************************************************
|
||||||
|
*
|
||||||
|
* TRIQS: a Toolbox for Research in Interacting Quantum Systems
|
||||||
|
*
|
||||||
|
* Copyright (C) 2014 by O. Parcollet
|
||||||
|
*
|
||||||
|
* TRIQS is free software: you can redistribute it and/or modify it under the
|
||||||
|
* terms of the GNU General Public License as published by the Free Software
|
||||||
|
* Foundation, either version 3 of the License, or (at your option) any later
|
||||||
|
* version.
|
||||||
|
*
|
||||||
|
* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||||
|
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
|
||||||
|
* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
|
||||||
|
* details.
|
||||||
|
*
|
||||||
|
* You should have received a copy of the GNU General Public License along with
|
||||||
|
* TRIQS. If not, see <http://www.gnu.org/licenses/>.
|
||||||
|
*
|
||||||
|
******************************************************************************/
|
||||||
|
#pragma once
|
||||||
|
#include "./base.hpp"
|
||||||
|
#include <boost/mpi.hpp>
|
||||||
|
|
||||||
|
namespace triqs {
|
||||||
|
namespace mpi {
|
||||||
|
|
||||||
|
/** ------------------------------------------------------------
|
||||||
|
* Type which we use boost::mpi
|
||||||
|
* ---------------------------------------------------------- **/
|
||||||
|
|
||||||
|
template <typename T> struct mpi_impl_boost_mpi {
|
||||||
|
|
||||||
|
static T invoke(tag::reduce, communicator c, T const &a, int root) {
|
||||||
|
T b;
|
||||||
|
boost::mpi::reduce(c, a, b, std::c14::plus<>(), root);
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
|
||||||
|
static T invoke(tag::allreduce, communicator c, T const &a, int root) {
|
||||||
|
T b;
|
||||||
|
boost::mpi::all_reduce(c, a, b, std::c14::plus<>(), root);
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
|
||||||
|
static void reduce_in_place(communicator c, T &a, int root) { boost::mpi::reduce(c, a, a, std::c14::plus<>(), root); }
|
||||||
|
static void broadcast(communicator c, T &a, int root) { boost::mpi::broadcast(c, a, root); }
|
||||||
|
|
||||||
|
static void scatter(communicator c, T const &, int root) = delete;
|
||||||
|
static void gather(communicator c, T const &, int root) = delete;
|
||||||
|
static void allgather(communicator c, T const &, int root) = delete;
|
||||||
|
};
|
||||||
|
|
||||||
|
// default
|
||||||
|
//template <typename T> struct mpi_impl<T> : mpi_impl_boost_mpi<T> {};
|
||||||
|
|
||||||
|
}}//namespace
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
103
triqs/mpi/generic.hpp
Normal file
103
triqs/mpi/generic.hpp
Normal file
@ -0,0 +1,103 @@
|
|||||||
|
/*******************************************************************************
|
||||||
|
*
|
||||||
|
* TRIQS: a Toolbox for Research in Interacting Quantum Systems
|
||||||
|
*
|
||||||
|
* Copyright (C) 2014 by O. Parcollet
|
||||||
|
*
|
||||||
|
* TRIQS is free software: you can redistribute it and/or modify it under the
|
||||||
|
* terms of the GNU General Public License as published by the Free Software
|
||||||
|
* Foundation, either version 3 of the License, or (at your option) any later
|
||||||
|
* version.
|
||||||
|
*
|
||||||
|
* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||||
|
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
|
||||||
|
* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
|
||||||
|
* details.
|
||||||
|
*
|
||||||
|
* You should have received a copy of the GNU General Public License along with
|
||||||
|
* TRIQS. If not, see <http://www.gnu.org/licenses/>.
|
||||||
|
*
|
||||||
|
******************************************************************************/
|
||||||
|
#pragma once
|
||||||
|
#include "./base.hpp"
|
||||||
|
#include <triqs/utility/tuple_tools.hpp>
|
||||||
|
|
||||||
|
#define TRIQS_MPI_IMPLEMENTED_AS_TUPLEVIEW using triqs_mpi_as_tuple = void;
|
||||||
|
namespace triqs {
|
||||||
|
namespace mpi {
|
||||||
|
|
||||||
|
template <typename Tag, typename T> struct mpi_lazy {
|
||||||
|
T const &ref;
|
||||||
|
int root;
|
||||||
|
communicator c;
|
||||||
|
};
|
||||||
|
|
||||||
|
/** ------------------------------------------------------------
|
||||||
|
* Type which are recursively treated by reducing them to a tuple
|
||||||
|
* of smaller objects.
|
||||||
|
* ---------------------------------------------------------- **/
|
||||||
|
template <typename T> struct mpi_impl_tuple {
|
||||||
|
|
||||||
|
mpi_impl_tuple() = default;
|
||||||
|
template <typename Tag> static mpi_lazy<Tag, T> invoke(Tag, communicator c, T const &a, int root) {
|
||||||
|
return {a, root, c};
|
||||||
|
}
|
||||||
|
|
||||||
|
#ifdef __cpp_generic_lambdas
|
||||||
|
static void reduce_in_place(communicator c, T &a, int root) {
|
||||||
|
tuple::for_each(view_as_tuple(a), [c, root](auto &x) { triqs::mpi::reduce_in_place(x, c, root); });
|
||||||
|
}
|
||||||
|
|
||||||
|
static void broadcast(communicator c, T &a, int root) {
|
||||||
|
tuple::for_each(view_as_tuple(a), [c, root](auto &x) { triqs::mpi::broadcast(x, c, root); });
|
||||||
|
}
|
||||||
|
|
||||||
|
template <typename Tag> static T &complete_operation(T &target, mpi_lazy<Tag, T> laz) {
|
||||||
|
auto l = [laz](auto &t, auto &s) { t = triqs::mpi::mpi_impl<std::decay_t<decltype(s)>>::invoke(Tag(), laz.c, s, laz.root); };
|
||||||
|
triqs::tuple::for_each_zip(l, view_as_tuple(target), view_as_tuple(laz.ref));
|
||||||
|
return target;
|
||||||
|
}
|
||||||
|
#else
|
||||||
|
|
||||||
|
struct aux1 {
|
||||||
|
communicator c;
|
||||||
|
int root;
|
||||||
|
|
||||||
|
template <typename T1> void operator()(T1 &x) const { triqs::mpi::reduce_in_place(c, x, root); }
|
||||||
|
};
|
||||||
|
|
||||||
|
static void reduce_in_place(communicator c, T &a, int root) {
|
||||||
|
tuple::for_each(aux1{c, root}, view_as_tuple(a));
|
||||||
|
}
|
||||||
|
|
||||||
|
struct aux2 {
|
||||||
|
communicator c;
|
||||||
|
int root;
|
||||||
|
|
||||||
|
template <typename T2> void operator()(T2 &x) const { triqs::mpi::broadcast(c, x, root); }
|
||||||
|
};
|
||||||
|
|
||||||
|
static void broadcast(communicator c, T &a, int root) {
|
||||||
|
tuple::for_each(aux2{c, root}, view_as_tuple(a));
|
||||||
|
}
|
||||||
|
|
||||||
|
template <typename Tag> struct aux3 {
|
||||||
|
mpi_lazy<Tag, T> laz;
|
||||||
|
|
||||||
|
template <typename T1, typename T2> void operator()(T1 &t, T2 &s) const {
|
||||||
|
t = triqs::mpi::mpi_impl<T2>::invoke(Tag(), laz.c, laz.s);
|
||||||
|
}
|
||||||
|
};
|
||||||
|
|
||||||
|
template <typename Tag> static void complete_operation(T &target, mpi_lazy<Tag, T> laz) {
|
||||||
|
auto l = aux3<Tag>{laz};
|
||||||
|
triqs::tuple::for_each_zip(l, view_as_tuple(target), view_as_tuple(laz.ref));
|
||||||
|
}
|
||||||
|
#endif
|
||||||
|
};
|
||||||
|
|
||||||
|
// If type T has a mpi_implementation nested struct, then it is mpi_impl<T>.
|
||||||
|
template <typename T> struct mpi_impl<T, typename T::triqs_mpi_as_tuple> : mpi_impl_tuple<T> {};
|
||||||
|
}
|
||||||
|
} // namespace
|
||||||
|
|
||||||
116
triqs/mpi/vector.hpp
Normal file
116
triqs/mpi/vector.hpp
Normal file
@ -0,0 +1,116 @@
|
|||||||
|
/*******************************************************************************
|
||||||
|
*
|
||||||
|
* TRIQS: a Toolbox for Research in Interacting Quantum Systems
|
||||||
|
*
|
||||||
|
* Copyright (C) 2014 by O. Parcollet
|
||||||
|
*
|
||||||
|
* TRIQS is free software: you can redistribute it and/or modify it under the
|
||||||
|
* terms of the GNU General Public License as published by the Free Software
|
||||||
|
* Foundation, either version 3 of the License, or (at your option) any later
|
||||||
|
* version.
|
||||||
|
*
|
||||||
|
* TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
|
||||||
|
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
|
||||||
|
* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
|
||||||
|
* details.
|
||||||
|
*
|
||||||
|
* You should have received a copy of the GNU General Public License along with
|
||||||
|
* TRIQS. If not, see <http://www.gnu.org/licenses/>.
|
||||||
|
*
|
||||||
|
******************************************************************************/
|
||||||
|
#pragma once
|
||||||
|
|
||||||
|
namespace triqs {
|
||||||
|
namespace mpi {
|
||||||
|
|
||||||
|
// When value_type is a basic type, we can directly call the C API
|
||||||
|
template <typename T> struct mpi_impl_std_vector_basic {
|
||||||
|
|
||||||
|
static MPI_Datatype D() { return mpi_datatype<T>::invoke(); }
|
||||||
|
|
||||||
|
// -----------
|
||||||
|
static void reduce_in_place(communicator c, std::vector<T> &a, int root) {
|
||||||
|
MPI_Reduce((c.rank() == root ? MPI_IN_PLACE : a.data()), a.data(), a.size(), D(), MPI_SUM, root, c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
static void allreduce_in_place(communicator c, std::vector<T> &a, int root) {
|
||||||
|
MPI_Allreduce(MPI_IN_PLACE, a.data(), a.size(), D(), MPI_SUM, root, c.get());
|
||||||
|
}
|
||||||
|
|
||||||
|
// -----------
|
||||||
|
static void broadcast(communicator c, std::vector<T> &a, int root) { MPI_Bcast(a.data(), a.size(), D(), root, c.get()); }
|
||||||
|
|
||||||
|
// -----------
|
||||||
|
static std::vector<T> invoke(tag::reduce, communicator c, T const &a, int root) {
|
||||||
|
std::vector<T> b(a.size());
|
||||||
|
MPI_Reduce(a.data(), b.data(), a.size(), D(), MPI_SUM, root, c.get());
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
|
||||||
|
// -----------
|
||||||
|
static std::vector<T> invoke(tag::allreduce, communicator c, std::vector<T> const &a, int root) {
|
||||||
|
std::vector<T> b(a.size());
|
||||||
|
MPI_Allreduce(a.data(), b.data(), a.size(), D(), MPI_SUM, root, c.get());
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
|
||||||
|
// -----------
|
||||||
|
static std::vector<T> invoke(tag::scatter, communicator c, std::vector<T> const &a, int root) {
|
||||||
|
|
||||||
|
auto slow_size = a.size();
|
||||||
|
auto sendcounts = std::vector<int>(c.size());
|
||||||
|
auto displs = std::vector<int>(c.size() + 1, 0);
|
||||||
|
int recvcount = slice_length(slow_size - 1, c, c.rank());
|
||||||
|
std::vector<T> b(recvcount);
|
||||||
|
|
||||||
|
for (int r = 0; r < c.size(); ++r) {
|
||||||
|
sendcounts[r] = slice_length(slow_size - 1, c, r);
|
||||||
|
displs[r + 1] = sendcounts[r] + displs[r];
|
||||||
|
}
|
||||||
|
|
||||||
|
MPI_Scatterv((void *)a.data(), &sendcounts[0], &displs[0], D(), (void *)b.data(), recvcount, D(), root, c.get());
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
|
||||||
|
// -----------
|
||||||
|
static std::vector<T> invoke(tag::gather, communicator c, std::vector<T> const &a, int root) {
|
||||||
|
long size = reduce(a.size(), c, root);
|
||||||
|
std::vector<T> b(size);
|
||||||
|
|
||||||
|
auto recvcounts = std::vector<int>(c.size());
|
||||||
|
auto displs = std::vector<int>(c.size() + 1, 0);
|
||||||
|
int sendcount = a.size();
|
||||||
|
auto mpi_ty = mpi::mpi_datatype<int>::invoke();
|
||||||
|
MPI_Gather(&sendcount, 1, mpi_ty, &recvcounts[0], 1, mpi_ty, root, c.get());
|
||||||
|
for (int r = 0; r < c.size(); ++r) displs[r + 1] = recvcounts[r] + displs[r];
|
||||||
|
|
||||||
|
MPI_Gatherv((void *)a.data(), sendcount, D(), (void *)b.data(), &recvcounts[0], &displs[0], D(), root, c.get());
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
|
||||||
|
// -----------
|
||||||
|
|
||||||
|
static std::vector<T> invoke(tag::allgather, communicator c, std::vector<T> const &a, int root) {
|
||||||
|
long size = reduce(a.size(), c, root);
|
||||||
|
std::vector<T> b(size);
|
||||||
|
|
||||||
|
auto recvcounts = std::vector<int>(c.size());
|
||||||
|
auto displs = std::vector<int>(c.size() + 1, 0);
|
||||||
|
int sendcount = a.size();
|
||||||
|
auto mpi_ty = mpi::mpi_datatype<int>::invoke();
|
||||||
|
MPI_Allgather(&sendcount, 1, mpi_ty, &recvcounts[0], 1, mpi_ty, c.get());
|
||||||
|
for (int r = 0; r < c.size(); ++r) displs[r + 1] = recvcounts[r] + displs[r];
|
||||||
|
|
||||||
|
MPI_Allgatherv((void *)a.data(), sendcount, D(), (void *)b.data(), &recvcounts[0], &displs[0], D(), c.get());
|
||||||
|
return b;
|
||||||
|
}
|
||||||
|
};
|
||||||
|
|
||||||
|
template <typename T>
|
||||||
|
struct mpi_impl<std::vector<T>, std14::enable_if_t<std::is_arithmetic<T>::value ||
|
||||||
|
triqs::is_complex<T>::value>> : mpi_impl_std_vector_basic<T> {};
|
||||||
|
|
||||||
|
// vector <T> for T non basic
|
||||||
|
}
|
||||||
|
} // namespace
|
||||||
|
|
||||||
Loading…
Reference in New Issue
Block a user