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Fix #23 : repack error, add path to hdf5

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This commit is contained in:
Priyanka Seth 2014-11-19 18:50:53 +01:00
parent be69c7345b
commit 376d9b3693
3 changed files with 6 additions and 5 deletions
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7
python/converters/converter_tools.py
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@ -19,6 +19,7 @@
# TRIQS. If not, see <http://www.gnu.org/licenses/>. # TRIQS. If not, see <http://www.gnu.org/licenses/>.
# #
################################################################################ ################################################################################
from pytriqs.cmake_info import hdf5_command_path
class ConverterTools: class ConverterTools:
@ -32,7 +33,7 @@ class ConverterTools:
for x in line.split(): yield string.atof(x) for x in line.split(): yield string.atof(x)
def __repack(self): def repack(self):
"""Calls the h5repack routine, in order to reduce the file size of the hdf5 archive. """Calls the h5repack routine, in order to reduce the file size of the hdf5 archive.
Should only be used BEFORE the first invokation of HDFArchive in the program, otherwise Should only be used BEFORE the first invokation of HDFArchive in the program, otherwise
the hdf5 linking is broken!!!""" the hdf5 linking is broken!!!"""
@ -42,8 +43,8 @@ class ConverterTools:
if not (mpi.is_master_node()): return if not (mpi.is_master_node()): return
mpi.report("Repacking the file %s"%self.hdf_file) mpi.report("Repacking the file %s"%self.hdf_file)
retcode = subprocess.call(["h5repack","-i%s"%self.hdf_file, "-otemphgfrt.h5"]) retcode = subprocess.call([hdf5_command_path+"/h5repack","-i%s"%self.hdf_file,"-otemphgfrt.h5"])
if (retcode!=0): if retcode != 0:
mpi.report("h5repack failed!") mpi.report("h5repack failed!")
else: else:
subprocess.call(["mv","-f","temphgfrt.h5","%s"%self.hdf_file]) subprocess.call(["mv","-f","temphgfrt.h5","%s"%self.hdf_file])

2
python/converters/hk_converter.py
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@ -47,7 +47,7 @@ class HkConverter(ConverterTools):
# Checks if h5 file is there and repacks it if wanted: # Checks if h5 file is there and repacks it if wanted:
import os.path import os.path
if (os.path.exists(self.hdf_file) and repacking): if (os.path.exists(self.hdf_file) and repacking):
ConverterTools.__repack(self) ConverterTools.repack(self)
def convert_dmft_input(self, first_real_part_matrix = True, only_upper_triangle = False, weights_in_file = False): def convert_dmft_input(self, first_real_part_matrix = True, only_upper_triangle = False, weights_in_file = False):

2
python/converters/wien2k_converter.py
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@ -57,7 +57,7 @@ class Wien2kConverter(ConverterTools):
# Checks if h5 file is there and repacks it if wanted: # Checks if h5 file is there and repacks it if wanted:
import os.path import os.path
if (os.path.exists(self.hdf_file) and repacking): if (os.path.exists(self.hdf_file) and repacking):
ConverterTools.__repack(self) ConverterTools.repack(self)
def convert_dmft_input(self): def convert_dmft_input(self):