Serialization boost/h5 and clean parameters

- parameters : clean, add back serialization. Clean whitespace

- serialization : depending on the version of the hdf5 lib,
  uses h5 or boost.

- TODO : test it on a machine with new hdf5.

pytriqs/parameters/parameters_desc.py

@@ -3,7 +3,6 @@ from wrap_generator import *
 # The module
 module = module_(full_name = "pytriqs.parameters.parameters", doc = "TO BE WRITTEN")
 module.add_include("<triqs/parameters/parameters.hpp>")
-module.add_include("<triqs/utility/formatted_output.hpp>")
 module.add_using("namespace triqs::params")
 
 # one class
@@ -20,7 +19,7 @@ g = class_(
 #add a constructor
 #g.add_constructor(doc = "DOC of constructor", args = [])
 
-g.add_method(py_name = "help", calling_pattern = "auto result = triqs::utility::print_formatted(self_c.generate_help())", signature = "std::string()", doc = "help")
+g.add_method(py_name = "help", calling_pattern = "auto result = self_c.help()", signature = "std::string()", doc = "help")
 
 # add getitem/setitem ...
 g.add_getitem(signature = "PyObject *(const char * key)", 

triqs/parameters/_field.cpp

@@ -45,18 +45,10 @@ namespace params {
   if (obj.has_type<std::string>()) {
    return lex_cast_from_string<double>(obj);
   }
-#define TRANSFORM_TYPE(T)                                                                                                        \
+  try {
- if (obj.has_type<T>()) return extract<T>(obj)
+   if (obj.has_type<long>()) return extract<long>(obj);
-  TRANSFORM_TYPE(int);
+  }
-  // TRANSFORM_TYPE(unsigned int);
+  catch(...){}
-  TRANSFORM_TYPE(long);
-  // TRANSFORM_TYPE(unsigned long);
-  TRANSFORM_TYPE(short);
-  // TRANSFORM_TYPE(unsigned short);
-  TRANSFORM_TYPE(long long);
-// TRANSFORM_TYPE(unsigned long long);
-// TRANSFORM_TYPE(float);
-#undef TRANSFORM_TYPE
   TRIQS_RUNTIME_ERROR << "extraction of " << obj.name() << " impossible : type mismatch. Got " << obj.type_name()
                       << ", while I am supposed to extract a double";
  }

triqs/parameters/_field.hpp

@@ -19,32 +19,28 @@
  *
  ******************************************************************************/
 #pragma once
-#include <triqs/utility/first_include.hpp>
+#include <triqs/arrays.hpp>
+#ifdef TRIQS_WITH_PYTHON_SUPPORT
+#include <triqs/python_tools/wrapper_tools.hpp>
+#endif
 #include <string>
 #include <complex>
 #include <memory>
 #include <map>
 #include <typeindex>
 #include <boost/preprocessor/seq/for_each.hpp>
-
+// serialization will use hdf5 with a failsafe to boost for old hdf5 libs.
-//#include <triqs/utility/serialization.hpp>
+#include <triqs/utility/serialization.hpp>
-
-#include <triqs/arrays.hpp>
-#include <triqs/python_tools/wrapper_tools.hpp>
 
 namespace triqs {
 namespace params {
 
- using triqs::get_triqs_hdf5_data_scheme;
+ using triqs::get_triqs_hdf5_data_scheme; // bring it into name resolution
 
  template <typename T> std::ostream &operator<<(std::ostream &out, std::vector<T> const &v) {
   out << "[";
-  if (v.size() > 3)
+  int c = 0;
-   out << v[0] << ", ..., " << v[v.size()-1];
+  for (auto const &x : v) out << (c++ ? ", " : "") << x;
-  else {
-   int c = 0;
-   for (auto const &x : v) out << (c++ ? ", " : "") << x;
-  }
   return out << "]";
  }
 
@@ -52,21 +48,13 @@ namespace params {
 #define TRIQS_UTIL_OPAQUE_OBJECT_PREDEFINED_CAST                                                                                 \
  (int)(long)(long long)(unsigned int)(unsigned long)(unsigned long long)(double)(bool)(std::string)
 
- // a trait to compute the type actually stored in the opaque object.
+ // the type actually stored 
- // T except for integers, which are all stored as long
+ template <typename T, typename Enable = void> struct storage_t_impl : std::conditional<std::is_integral<T>::value, long, T>{};
- template <typename T, typename Enable = void> struct storage_t_impl {
-  using type = T;
- };
  template <typename T> using storage_t = typename storage_t_impl<std::c14::decay_t<T>>::type;
 
- template <typename T> struct storage_t_impl<T, std::c14::enable_if_t<std::is_integral<T>::value>> {
-  using type = long;
- };
- // differentiate value and view ?
  template <typename A> struct storage_t_impl<A, std::c14::enable_if_t<arrays::is_amv_value_or_view_class<A>::value>> {
   using type = arrays::array<typename A::value_type, A::rank>;
  };
-
  template<> struct storage_t_impl<const char *> {using type = std::string;};
  template<> struct storage_t_impl<char *> {using type = std::string;};
 
@@ -80,14 +68,14 @@ namespace params {
    virtual _data *clone() const = 0;
    virtual void h5_write_(h5::group, std::string const &) const = 0;
    virtual void h5_read_(h5::group, std::string const &) = 0;
-   
+   virtual std::string serialize() const = 0;
-   //virtual std::string serialize() const = 0;
+   virtual void deserialize(std::string const &) = 0;
-   //virtual void deserialize(std::string const &) = 0;
-   
    virtual std::ostream &print(std::ostream &out) const = 0;
+#ifdef TRIQS_WITH_PYTHON_SUPPORT
    virtual bool from_python_convertible(PyObject *) const = 0;
    virtual void set_from_python(PyObject *) = 0;
    virtual PyObject *to_python() const = 0;
+#endif
   };
 
   template <typename T> struct _data_impl : _data {
@@ -101,19 +89,18 @@ namespace params {
    virtual _data *clone() const override { return new _data_impl(*this); }
    virtual void h5_write_(h5::group f, std::string const &name) const override { h5_write(f, name, x); }
    virtual void h5_read_(h5::group f, std::string const &name) override { h5_read(f, name, x); }
-  
-   /*
    virtual std::string serialize() const override { return triqs::serialize(x); }
    virtual void deserialize(std::string const &s) override {
     x = triqs::deserialize<T>(s);
    };
-   */
    virtual std::ostream &print(std::ostream &out) const override { return out << x; }
+#ifdef TRIQS_WITH_PYTHON_SUPPORT
    virtual bool from_python_convertible(PyObject *ob) const override {
     return py_tools::py_converter<T>::is_convertible(ob, true);
    }
    virtual void set_from_python(PyObject *ob) override { x = py_tools::py_converter<T>::py2c(ob); }
    virtual PyObject *to_python() const override { return py_tools::py_converter<T>::c2py(x); }
+#endif
   };
 
   std::type_index index;
@@ -121,18 +108,28 @@ namespace params {
   static std::map<std::type_index, std::string> type_names;
   std::string name_; // for_error_messages
   bool modified = false;
-
+  bool no_default_value = false;
+  
   // only parameters will construct _field
   template <typename T>
-  _field(T obj, std::string n, bool modification_required)
+  _field(T obj, std::string n, bool without_default_value)
-     : index(typeid(storage_t<T>)), p(new _data_impl<storage_t<T>>{std::move(obj)}), name_(n), modified(!modification_required) {
+     : index(typeid(storage_t<T>)), p(new _data_impl<storage_t<T>>{std::move(obj)}), name_(n), no_default_value(without_default_value) {
    type_names.insert({index, get_triqs_hdf5_data_scheme(storage_t<T>{})});
   }
+  
+  std::string type_name() const { return type_name(index); }
+  static std::string type_name(std::type_index i);
+
+  const void *get() const { return (p ? p->get() : nullptr); }
+  template <typename T> friend T extract(_field const &ob);
+  template <typename T> bool has_type() const { return index == typeid(T); }
 
   public:
-  //_field() : index(typeid(void)) {} // BREAKS invariant : only used for BOOST serialization...
+#ifdef TRIQS_SERIALIZATION_WITH_BOOST
+  _field() : index(typeid(void)) {} // BREAKS invariant : only used for BOOST serialization.
+#endif
   _field(_field &&c) = default;
-  _field(_field const &x) : index(x.index), p(x.p ? x.p->clone() : nullptr), name_(x.name_), modified(x.modified) {} // regular type
+  _field(_field const &x) : index(x.index), p(x.p ? x.p->clone() : nullptr), name_(x.name_), modified(x.modified), no_default_value(x.no_default_value) {} // regular type
 
   _field &operator=(_field &&c) = default;
   _field &operator=(_field const &x) { return operator=(_field(x)); }
@@ -147,33 +144,38 @@ namespace params {
    return *this;
   }
 
-  // rewrite a few cases for convenience ...
+  // rewrite a few cases for practical convenience ...
   _field &operator=(int rhs) { // a special case where we can correct : int -> double 
    if (index == typeid(double)) return operator=(double(rhs));
-   return operator=(long(rhs));// beware infinite loop!
+   return operator=(long(rhs));// beware infinite loop! Works because int != long ... Clean this ...
   }
-
-  // special treatment for const char *: fall back to string
   _field &operator=(const char *rhs) { return operator=(std::string(rhs)); }
 
-  // for subgroups only : implemented after parameters. Check type at runtime
+  // In the case where the data is itself a parameters (used to implement subgroups)
+  // we suplement _field with a few parameters methods
+  // Implemented after parameters (we need the type).
+  // Strict check type at runtime.
   template <typename... T> _field &add_field(T &&... x);
   _field &operator[](const char * key);
   _field const &operator[](const char * key) const;
   friend bool is_parameter(_field const & f);
   _field& add_group(std::string const& key, std::string const& doc);
 
-  std::string type_name() const { return type_name(index); }
+  /// Name of the field
-
   std::string const &name() const { return name_; }
-  bool is_modified() const { return modified; }
-  const void *get() const { return (p ? p->get() : nullptr); }
-  template <typename T> bool has_type() const { return index == typeid(T); }
-  static std::string type_name(std::type_index i);
 
+  /// Has the field been modified
+  bool is_modified() const { return modified; }
+
+  /// Is a modification required for this field
+  bool is_modification_required() const { return no_default_value && (!modified); }
+ 
+#ifdef TRIQS_WITH_PYTHON_SUPPORT
+  /// Convertions python <-> C++
   bool from_python_convertible(PyObject *ob) const { return p->from_python_convertible(ob); }
   void set_from_python(PyObject *ob) { p->set_from_python(ob); }
   PyObject *to_python() const { return p->to_python(); }
+#endif
 
 // implemented later, since it needs the extract function ...
 #define CAST_OPERATOR(r, data, T) operator T() const;
@@ -181,20 +183,17 @@ namespace params {
 #undef CAST_OPERATOR
 
   // ----- Boost serialisation
-/*
+
-   template<class Archive>
+  template <class Archive> void save(Archive &ar, const unsigned int version) const {
-    void save(Archive & ar, const unsigned int version) const {
+   std::string s = p->serialize();
-     std::string s = p->serialize();
+   ar << TRIQS_MAKE_NVP("seria_str", s);
-     ar << TRIQS_MAKE_NVP("seria_str", s);
+  }
-    }
+  template <class Archive> void load(Archive &ar, const unsigned int version) {
-   template<class Archive>
+   std::string s;
-    void load(Archive & ar, const unsigned int version) {
+   ar >> TRIQS_MAKE_NVP("seria_str", s);
-     std::string s;
+   p->deserialize(s);
-     ar >> TRIQS_MAKE_NVP("seria_str", s);
+  }
-     p->deserialize(s);
+  BOOST_SERIALIZATION_SPLIT_MEMBER();
-    }
-   BOOST_SERIALIZATION_SPLIT_MEMBER();
-*/
 
   friend std::ostream &operator<<(std::ostream &out, _field const &ob) { return ob.p->print(out); }
 

triqs/parameters/parameters.cpp

@@ -1,5 +1,4 @@
 #include <triqs/utility/first_include.hpp>
-#include <triqs/utility/formatted_output.hpp>
 #include <boost/serialization/string.hpp>
 #include "./parameters.hpp"
 #include <triqs/utility/serialization.hpp>
@@ -29,6 +28,8 @@ namespace params {
    A(4);
   }
  }
+#undef A
+#undef R
 
  parameters::_data_t::iterator parameters::find(std::string const& key) {
   return std::find_if(_data.begin(), _data.end(), [&key](_data_elem const& x) { return x.key == key; });
@@ -76,9 +77,9 @@ namespace params {
  void parameters::update(parameters const& other) {
   for (auto const& kfd : other._data) {
    auto it = find(kfd.key);
-   if (it !=_data.end()) {
+   if (it !=_data.end()) { // already there
     if (it->f.index != kfd.f.index) TRIQS_RUNTIME_ERROR << "Index mismatch in merging parameters";
-    if (kfd.doc.size()>0) it->doc = kfd.doc;
+    if (kfd.doc.size() > 0) it->doc = kfd.doc; // update doc iif there is a doc ...
    } else
    _data.push_back(kfd);
   }
@@ -86,45 +87,73 @@ namespace params {
 
   //-----------------------------------------------------------------------
 
- std::vector<std::vector<std::string>> parameters::generate_help() const {
+ std::vector<std::vector<std::string>> parameters::generate_help(bool with_header) const {
   std::vector<std::vector<std::string>> str;
-  str.push_back({"parameter:", "type:", "value:", "description:"});
+  if (with_header) str.push_back({"parameter:", "type:", "value:", "description:"});
   for (auto const& s : _data)
-   if (!s.f.is_modified()) str.push_back({s.key, s.f.type_name(), "-", s.doc});
+   if (s.f.is_modification_required()) str.push_back({s.key, s.f.type_name(), "-", s.doc});
 
   for (auto const& s : _data) {
    if (is_parameter(s.f)) continue; // no subgroup
-   if (s.f.is_modified()) {
+   if (!s.f.is_modification_required()) {
     std::ostringstream val;
     val << s.f;
     auto sv = val.str();
     boost::algorithm::trim(sv);
     int size_max = 30;
+    std::replace( sv.begin(), sv.end(), '\n', ','); // replace all '\n' with ' '
     if (sv.size()>size_max) {
      auto s2 = std::string(size_max+5,'.');
      std::copy(sv.begin(), sv.begin()+size_max/2, s2.begin());
      std::copy(sv.end()-size_max/2, sv.end(), s2.end()-size_max/2);
      sv = s2;
     }
-    std::replace( sv.begin(), sv.end(), '\n', ','); // replace all 'x' to 'y'
     str.push_back({s.key, s.f.type_name(), sv, s.doc});
    }
   }
   // all sub groups after
   for (auto const& s : _data) {
    if (!is_parameter(s.f)) continue;
-   auto p = dynamic_cast<_field::_data_impl<parameters>*>(s.f.p.get());
+   auto* p = dynamic_cast<_field::_data_impl<parameters>*>(s.f.p.get());
-   auto str2 = p->x.generate_help();
+   auto str2 = p->x.generate_help(false);
    for (auto & x : str2) x[0] = "  " + x[0];
    str2.insert(str2.begin(), {"Sub-group : ", s.key, " ", ""});
    str.insert(str.end(), str2.begin(), str2.end());
   }
   return str;
  }
+ //-----------------------------------------------------------------------
+
+ //
+ std::string print_formatted(std::vector<std::vector<std::string>> const &out){
+   std::vector<std::size_t> max_len;
+   std::ostringstream str;
+
+   for(auto const &s : out){
+       max_len.resize(out[0].size(),0);
+       for(std::size_t i=0; i<s.size(); ++i)
+         if(s[i].length()>max_len[i]) max_len[i]=s[i].length();
+   }
+   for(auto const &s : out){
+     for(std::size_t i=0; i<s.size(); ++i)
+       str << std::left << std::setw(max_len[i]+2) << s[i];
+     str << std::endl;
+   }
+
+   return str.str();
+ }
+
+ //-----------------------------------------------------------------------
+
+ /// help as a string
+  std::string parameters::help() const {
+   return print_formatted(generate_help());
+  }
+
+ //-----------------------------------------------------------------------
 
  std::ostream& operator<<(std::ostream& out, parameters const& p) {
-  out << utility::print_formatted(p.generate_help());
+  return out << p.help();
-  return out;
  }
 
  //-----------------------------------------------------------------------

triqs/parameters/parameters.hpp

@@ -24,15 +24,23 @@
 namespace triqs {
 namespace params {
 
+ /// For add_field method of parameters.
  template<typename T> struct no_default {};
+
  /**
-  * Class for storing program parameters.
+  * DOC to be written.
-  * Parameters can be added to and extracted from the parameter object using the element access operator [].
+  *
-  * Each element is stored by means of an object of type _field, which also stores the original type (all
+  * Provide a form for program parameters.
-  * integral types are collapsed to long and char* is collapsed to std::string).
+  * 
-  * When accessing elements, a typecheck is performed. Typecasts are allowed and are similar to the C++ rules
+  * Fields of the form can be added with add_field method (only in C++), with a name, a type, a doc, and optionally a default value.
-  * for casts. If the lvalue has type double, a cast from any integral type is allowed. If the lvalue has
+  * 
-  * arithmetic type, a boost::lexical_cast is attempted.
+  * They can be retrieved from and put into the form, using the [] operator, in C++ and python.
+  * 
+  * The data is stored with a strict type checking at runtime, with some type collapse (all integers into a long, 
+  *  all string, const char * into a std::string, etc).
+  * 
+  * Basic type cast to basic types are provided.
+  *
   * The class is boost-serializable and implements hdf5 I/O operations.
   */
  class parameters {
@@ -56,51 +64,70 @@ namespace params {
   public:
   parameters();
 
-  /// calls can be chained for multiple parameters
+  /// Add a field with a default value
   template <typename T> parameters& add_field(std::string const& key, T&& x, std::string const& doc) {
    insert(key, _field{std::forward<T>(x),key, false}, doc);
    return *this;
   }
 
-  // add a field without a default value
+  // Add a field without a default value
   template <typename T> parameters& add_field(std::string const& key, no_default<T>, std::string const& doc) {
    insert(key, _field{T{}, key, true}, doc);
    return *this;
   }
 
+  /// Add a subgroup (a field which it itself a parameter).
   parameters& add_group(std::string const& key, std::string const& doc) {
    insert(key, _field{parameters{}, key, false}, doc);
    return *this;
   }
 
+  /// Sort with the key. By default the list of fields is ordered as in the order of their addition to the parameter.
   void sort_by_key();
 
-  bool has_key(std::string const& k) const;
+  /// Does the form have the key ?
+  bool has_key(std::string const& key) const;
 
-  /// Access the parameter key, which must be present (or it throws an exception).
+  /** 
+   * Access the parameter key.
+   * Key must be a valid key or a TRIQS_RUNTIME_ERROR is thrown.
+   */
   _field& operator[](const char * key);
+
+  /** 
+   * Access the parameter key.
+   * Key must be a valid key or a TRIQS_RUNTIME_ERROR is thrown.
+   */
   _field const& operator[](const char * key) const;
 
   /// generate help in form of a table of strings containing a list of required and optional parameters
-  std::vector<std::vector<std::string>> generate_help() const;
+  std::vector<std::vector<std::string>> generate_help(bool with_header = true) const;
 
-  friend std::string get_triqs_hdf5_data_scheme(parameters) { return ""; }
+  /// help as a string 
+  std::string help() const;
+
+  /// hdf5
+  friend std::string get_triqs_hdf5_data_scheme(parameters const &) { return ""; }
   friend void h5_write(h5::group F, std::string const& subgroup_name, parameters const& p);
   friend void h5_read(h5::group F, std::string const& subgroup_name, parameters& p);
+  
+  /// Ostream
   friend std::ostream& operator<<(std::ostream& out, parameters const& p);
 
   /**
    * Update with another parameter set.
    * If a key is present in other and not in this, add parameter to this.
-   * If a key is present in both, overwrite parameter in this without any check (Python-like behaviour).
+   * If a key is present in both, overwrite parameter with a strict type checking.
    */
   void update(parameters const&);
  };
 
+ /// Another form of update, more pythonic
  inline parameters operator+(parameters p1, parameters const& p2) {
   p1.update(p2);
   return p1;
  }
+
  // can only be implemented after complete declaration of parameters
  template <typename... T> _field& _field::add_field(T&&... x) {
   auto* pp = dynamic_cast<_data_impl<parameters>*>(p.get());
@@ -110,4 +137,9 @@ namespace params {
  }
 }
 }
+
+#ifdef TRIQS_WITH_PYTHON_SUPPORT
+// include the generated python converter
 #include <pytriqs/converters/parameters.hpp>
+#endif
+

triqs/utility/boost_serialization.hpp

@@ -0,0 +1,74 @@
+/*******************************************************************************
+ *
+ * TRIQS: a Toolbox for Research in Interacting Quantum Systems
+ *
+ * Copyright (C) 2012 by M. Ferrero, O. Parcollet
+ *
+ * TRIQS is free software: you can redistribute it and/or modify it under the
+ * terms of the GNU General Public License as published by the Free Software
+ * Foundation, either version 3 of the License, or (at your option) any later
+ * version.
+ *
+ * TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
+ * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+ * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
+ * details.
+ *
+ * You should have received a copy of the GNU General Public License along with
+ * TRIQS. If not, see <http://www.gnu.org/licenses/>.
+ *
+ ******************************************************************************/
+#ifndef TRIQS_SERIAL_H
+#define TRIQS_SERIAL_H
+#include <triqs/utility/first_include.hpp>
+#include <triqs/utility/view_tools.hpp>
+//#include <vector>
+//#include <string>
+#include <boost/iostreams/stream.hpp>
+#include <boost/iostreams/device/back_inserter.hpp>
+#include <boost/archive/binary_oarchive.hpp>
+#include <boost/archive/binary_iarchive.hpp>
+#include <boost/archive/text_oarchive.hpp>
+#include <boost/archive/text_iarchive.hpp>
+#include <boost/serialization/complex.hpp>
+#include <boost/serialization/vector.hpp>
+#include <boost/serialization/string.hpp>
+
+namespace triqs { 
+
+ // serialize obj into an std::string
+ template <typename T> std::string serialize (T const & obj) { 
+  std::string serial_str;
+  boost::iostreams::back_insert_device<std::string> inserter(serial_str);
+  boost::iostreams::stream<boost::iostreams::back_insert_device<std::string> > s(inserter);
+  //boost::archive::binary_oarchive oa(s);
+  boost::archive::text_oarchive oa(s);
+  oa << obj;
+  s.flush();
+  return serial_str;
+ }
+
+ template <typename T> T deserialize (std::string const & serial_str) { 
+  T obj;
+  // wrap buffer inside a stream and deserialize serial_str into obj
+  boost::iostreams::basic_array_source<char> device(serial_str.data(), serial_str.size());
+  boost::iostreams::stream<boost::iostreams::basic_array_source<char> > s(device);
+  //boost::archive::binary_iarchive ia(s);
+  boost::archive::text_iarchive ia(s);
+  ia >> obj;
+  return obj;
+ }
+
+ template <typename T> void deserialize_into_view (std::string const & serial_str, T & x) { 
+  typename regular_type_if_exists_else_type<T>::type obj;
+  // wrap buffer inside a stream and deserialize serial_str into obj
+  boost::iostreams::basic_array_source<char> device(serial_str.data(), serial_str.size());
+  boost::iostreams::stream<boost::iostreams::basic_array_source<char> > s(device);
+  boost::archive::text_iarchive ia(s);
+  //boost::archive::binary_iarchive ia(s);
+  ia >> obj;
+  x= typename view_type_if_exists_else_type<T>::type (obj);
+ }
+}
+#endif
+

triqs/utility/formatted_output.hpp

@@ -1,54 +0,0 @@
-/*******************************************************************************
- *
- * TRIQS: a Toolbox for Research in Interacting Quantum Systems
- *
- * Copyright (C) 2013 by H. Hafermann
- *
- * TRIQS is free software: you can redistribute it and/or modify it under the
- * terms of the GNU General Public License as published by the Free Software
- * Foundation, either version 3 of the License, or (at your option) any later
- * version.
- *
- * TRIQS is distributed in the hope that it will be useful, but WITHOUT ANY
- * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
- * FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
- * details.
- *
- * You should have received a copy of the GNU General Public License along with
- * TRIQS. If not, see <http://www.gnu.org/licenses/>.
- *
- ******************************************************************************/
-#ifndef TRIQS_FORMATTED_OUTPUT_H
-#define TRIQS_FORMATTED_OUTPUT_H
-
-#include<string>
-#include<vector>
-#include<iostream>
-#include<iomanip>
-#include<sstream>
-
-namespace triqs { namespace utility { 
-
- inline std::string print_formatted(std::vector<std::vector<std::string>> const &out){
-   std::vector<std::size_t> max_len;
-   std::ostringstream str;
-
-   for(auto const &s : out){
-       max_len.resize(out[0].size(),0);
-       for(std::size_t i=0; i<s.size(); ++i)
-         if(s[i].length()>max_len[i]) max_len[i]=s[i].length();
-   }
-   for(auto const &s : out){
-     for(std::size_t i=0; i<s.size(); ++i)
-       str << std::left << std::setw(max_len[i]+2) << s[i];
-     str << std::endl;
-   }
-
-   return str.str();
- }
- 
-}}
-#endif
-
-
-

triqs/utility/serialization.hpp

@@ -2,7 +2,7 @@
  *
  * TRIQS: a Toolbox for Research in Interacting Quantum Systems
  *
- * Copyright (C) 2012 by M. Ferrero, O. Parcollet
+ * Copyright (C) 2014 by O. Parcollet
  *
  * TRIQS is free software: you can redistribute it and/or modify it under the
  * terms of the GNU General Public License as published by the Free Software
@@ -18,57 +18,18 @@
  * TRIQS. If not, see <http://www.gnu.org/licenses/>.
  *
  ******************************************************************************/
-#ifndef TRIQS_SERIAL_H
+#pragma once
-#define TRIQS_SERIAL_H
+
-#include <triqs/utility/first_include.hpp>
+#if defined(TRIQS_SERIALIZATION_USE_BOOST) or not H5_VERSION_GE(1,8,9)
-#include <triqs/utility/view_tools.hpp>
+#include "./boost_serialization.hpp"
-//#include <vector>
+
-//#include <string>
+#define TRIQS_SERIALIZATION_WITH_BOOST
-#include <boost/iostreams/stream.hpp>
+#else 
-#include <boost/iostreams/device/back_inserter.hpp>
+#include "../h5/serialization.hpp"
-#include <boost/archive/binary_oarchive.hpp>
+#define TRIQS_SERIALIZATION_WITH_HDF5
-#include <boost/archive/binary_iarchive.hpp>
-#include <boost/archive/text_oarchive.hpp>
-#include <boost/archive/text_iarchive.hpp>
-#include <boost/serialization/complex.hpp>
-#include <boost/serialization/vector.hpp>
-#include <boost/serialization/string.hpp>
 
 namespace triqs { 
-
+ using h5::serialize;
- // serialize obj into an std::string
+ using h5::deserialize;
- template <typename T> std::string serialize (T const & obj) { 
-  std::string serial_str;
-  boost::iostreams::back_insert_device<std::string> inserter(serial_str);
-  boost::iostreams::stream<boost::iostreams::back_insert_device<std::string> > s(inserter);
-  //boost::archive::binary_oarchive oa(s);
-  boost::archive::text_oarchive oa(s);
-  oa << obj;
-  s.flush();
-  return serial_str;
- }
-
- template <typename T> T deserialize (std::string const & serial_str) { 
-  T obj;
-  // wrap buffer inside a stream and deserialize serial_str into obj
-  boost::iostreams::basic_array_source<char> device(serial_str.data(), serial_str.size());
-  boost::iostreams::stream<boost::iostreams::basic_array_source<char> > s(device);
-  //boost::archive::binary_iarchive ia(s);
-  boost::archive::text_iarchive ia(s);
-  ia >> obj;
-  return obj;
- }
-
- template <typename T> void deserialize_into_view (std::string const & serial_str, T & x) { 
-  typename regular_type_if_exists_else_type<T>::type obj;
-  // wrap buffer inside a stream and deserialize serial_str into obj
-  boost::iostreams::basic_array_source<char> device(serial_str.data(), serial_str.size());
-  boost::iostreams::stream<boost::iostreams::basic_array_source<char> > s(device);
-  boost::archive::text_iarchive ia(s);
-  //boost::archive::binary_iarchive ia(s);
-  ia >> obj;
-  x= typename view_type_if_exists_else_type<T>::type (obj);
- }
 }
 #endif
-