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added VaspConverter to reference manual

This commit is contained in:
Malte Schüler 2019-07-03 13:06:50 +02:00
parent 42a729678a
commit 1eecf80b66
2 changed files with 69 additions and 0 deletions

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@ -22,6 +22,12 @@ Wannier90 Converter
:members: :members:
:special-members: :special-members:
VASP Converter
-------------------
.. autoclass:: triqs_dft_tools.converters.vasp_converter.VaspConverter
:members:
:special-members:
Converter Tools Converter Tools
--------------- ---------------
.. autoclass:: triqs_dft_tools.converters.converter_tools.ConverterTools .. autoclass:: triqs_dft_tools.converters.converter_tools.ConverterTools

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@ -47,6 +47,32 @@ class VaspConverter(ConverterTools):
proj_or_hk='proj'): proj_or_hk='proj'):
""" """
Init of the class. Variable filename gives the root of all filenames, e.g. case.ctqmcout, case.h5, and so on. Init of the class. Variable filename gives the root of all filenames, e.g. case.ctqmcout, case.h5, and so on.
Parameters
----------
filename : string
Base name of DFT files.
hdf_filename : string, optional
Name of hdf5 archive to be created.
dft_subgrp : string, optional
Name of subgroup storing necessary DFT data.
symmcorr_subgrp : string, optional
Name of subgroup storing correlated-shell symmetry data.
parproj_subgrp : string, optional
Name of subgroup storing partial projector data.
symmpar_subgrp : string, optional
Name of subgroup storing partial-projector symmetry data.
bands_subgrp : string, optional
Name of subgroup storing band data.
misc_subgrp : string, optional
Name of subgroup storing miscellaneous DFT data.
transp_subgrp : string, optional
Name of subgroup storing transport data.
repacking : boolean, optional
Does the hdf5 archive need to be repacked to save space?
proj_or_hk : string, optional
Select scheme to convert between KS bands and localized orbitals.
""" """
assert type(filename)==StringType, "Please provide the DFT files' base name as a string." assert type(filename)==StringType, "Please provide the DFT files' base name as a string."
@ -73,6 +99,11 @@ class VaspConverter(ConverterTools):
def read_data(self, fh): def read_data(self, fh):
""" """
Generator for reading plain data. Generator for reading plain data.
Parameters
----------
fh : file object
file object which is read in.
""" """
for line in fh: for line in fh:
line_ = line.strip() line_ = line.strip()
@ -85,6 +116,11 @@ class VaspConverter(ConverterTools):
def read_header_and_data(self, filename): def read_header_and_data(self, filename):
""" """
Opens a file and returns a JSON-header and the generator for the plain data. Opens a file and returns a JSON-header and the generator for the plain data.
Parameters
----------
filename : string
file name of the file to read.
""" """
fh = open(filename, 'rt') fh = open(filename, 'rt')
header = "" header = ""
@ -367,6 +403,24 @@ class VaspConverter(ConverterTools):
Reads input for the band window from bandwin_file, which is case.oubwin, Reads input for the band window from bandwin_file, which is case.oubwin,
structure from struct_file, which is case.struct, structure from struct_file, which is case.struct,
symmetries from outputs_file, which is case.outputs. symmetries from outputs_file, which is case.outputs.
Parameters
----------
bandwin_file : string
filename of .oubwin/up/dn file.
struct_file : string
filename of .struct file.
outputs_file : string
filename of .outputs file.
misc_subgrp : string
name of the subgroup in which to save
SO : boolean
spin-orbit switch
SP : int
spin
n_k : int
number of k-points
""" """
if not (mpi.is_master_node()): return if not (mpi.is_master_node()): return
@ -461,6 +515,15 @@ class VaspConverter(ConverterTools):
def convert_symmetry_input(self, ctrl_head, orbits, symm_subgrp): def convert_symmetry_input(self, ctrl_head, orbits, symm_subgrp):
""" """
Reads input for the symmetrisations from symm_file, which is case.sympar or case.symqmc. Reads input for the symmetrisations from symm_file, which is case.sympar or case.symqmc.
Parameters
----------
ctrl_head : dict
dictionary of header of .ctrl file
orbits : list of shells
contains all shells
symm_subgrp : name of symmetry group in h5 archive
""" """
# In VASP interface the symmetries are read directly from *.ctrl file # In VASP interface the symmetries are read directly from *.ctrl file