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359 lines
8.6 KiB
OCaml
359 lines
8.6 KiB
OCaml
(** All utilities which should be included in all source files are defined here *)
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(** {1 Functions from libm} *)
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open Constants
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external erf_float : float -> float = "erf_float_bytecode" "erf_float"
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[@@unboxed] [@@noalloc]
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external erfc_float : float -> float = "erfc_float_bytecode" "erfc_float"
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[@@unboxed] [@@noalloc]
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external gamma_float : float -> float = "gamma_float_bytecode" "gamma_float"
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[@@unboxed] [@@noalloc]
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external popcnt : int64 -> int32 = "popcnt_bytecode" "popcnt"
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[@@unboxed] [@@noalloc]
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(** popcnt instruction *)
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let popcnt i = (popcnt [@inlined] ) i |> Int32.to_int
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external trailz : int64 -> int32 = "trailz_bytecode" "trailz" "int"
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[@@unboxed] [@@noalloc]
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(** ctz instruction *)
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let trailz i = trailz i |> Int32.to_int
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external leadz : int64 -> int32 = "leadz_bytecode" "leadz" "int"
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[@@unboxed] [@@noalloc]
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(** bsf instruction *)
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external vfork : unit -> int = "unix_vfork" "unix_vfork"
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let leadz i = leadz i |> Int32.to_int
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exception SIGTERM
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let () =
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let f _ = raise SIGTERM in
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Sys.set_signal Sys.sigint (Sys.Signal_handle f)
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;;
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let not_implemented () =
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failwith "Not implemented"
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let memo_float_of_int =
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Array.init 64 float_of_int
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let float_of_int_fast i =
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if Int.logand i 63 = i then
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memo_float_of_int.(i)
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else
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float_of_int i
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let factmax = 150
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(* Incomplete gamma function :
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{% $\gamma(\alpha,x) = \int_0^x e^{-t} t^{\alpha-1} dt$ %}
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{% $p: \frac{1}{\Gamma(\alpha)} \int_0^x e^{-t} t^{\alpha-1} dt$ %}
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{% $q: \frac{1}{\Gamma(\alpha)} \int_x^\infty e^{-t} t^{\alpha-1} dt$ %}
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reference - Haruhiko Okumura: C-gengo niyoru saishin algorithm jiten
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(New Algorithm handbook in C language) (Gijyutsu hyouron
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sha, Tokyo, 1991) p.227 [in Japanese] *)
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let incomplete_gamma ~alpha x =
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assert (alpha >= 0.);
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assert (x >= 0.);
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let a = alpha in
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let a_inv = 1./. a in
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let gf = gamma_float alpha in
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let loggamma_a = log gf in
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let rec p_gamma x =
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if x >= 1. +. a then 1. -. q_gamma x
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else if x = 0. then 0.
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else
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let rec pg_loop prev res term k =
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if k > 1000. then failwith "p_gamma did not converge."
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else if prev = res then res
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else
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let term = term *. x /. (a +. k) in
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(pg_loop [@tailcall]) res (res +. term) term (k +. 1.)
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in
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let r0 = exp (a *. log x -. x -. loggamma_a) *. a_inv in
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pg_loop min_float r0 r0 1.
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and q_gamma x =
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if x < 1. +. a then 1. -. p_gamma x
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else
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let rec qg_loop prev res la lb w k =
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if k > 1000. then failwith "q_gamma did not converge."
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else if prev = res then res
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else
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let k_inv = 1. /. k in
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let kma = (k -. 1. -. a) *. k_inv in
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let la, lb =
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lb, kma *. (lb -. la) +. (k +. x) *. lb *. k_inv
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in
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let w = w *. kma in
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let prev, res = res, res +. w /. (la *. lb) in
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(qg_loop [@tailcall]) prev res la lb w (k +. 1.)
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in
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let w = exp (a *. log x -. x -. loggamma_a) in
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let lb = (1. +. x -. a) in
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qg_loop min_float (w /. lb) 1. lb w 2.0
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in
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gf *. p_gamma x
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let fact_memo =
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let rec aux accu_l accu = function
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| 0 -> (aux [@tailcall]) [1.] 1. 1
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| i when (i = factmax) ->
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let x = (float_of_int factmax) *. accu in
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List.rev (x::accu_l)
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| i -> let x = (float_of_int i) *. accu in
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(aux [@tailcall]) (x::accu_l) x (i+1)
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in
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aux [] 0. 0
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|> Array.of_list
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let fact = function
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| i when (i < 0) ->
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raise (Invalid_argument "Argument of factorial should be non-negative")
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| i when (i > 150) ->
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raise (Invalid_argument "Result of factorial is infinite")
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| i -> fact_memo.(i)
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let binom =
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let memo =
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let m =
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Array.make_matrix 64 64 0
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in
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for n=0 to Array.length m - 1 do
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m.(n).(0) <- 1;
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m.(n).(n) <- 1;
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for k=1 to (n - 1) do
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m.(n).(k) <- m.(n-1).(k-1) + m.(n-1).(k)
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done
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done;
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m
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in
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let rec f n k =
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assert (k >= 0);
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assert (n >= k);
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if k = 0 || k = n then
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1
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else if n < 64 then
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memo.(n).(k)
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else
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f (n-1) (k-1) + f (n-1) k
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in f
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let binom_float n k =
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binom n k
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|> float_of_int_fast
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let rec pow a = function
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| 0 -> 1.
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| 1 -> a
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| 2 -> a *. a
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| 3 -> a *. a *. a
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| -1 -> 1. /. a
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| n when n > 0 ->
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let b = pow a (n / 2) in
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b *. b *. (if n mod 2 = 0 then 1. else a)
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| n when n < 0 -> (pow [@tailcall]) (1./.a) (-n)
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| _ -> assert false
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let chop f g =
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if (abs_float f) < Constants.epsilon then 0.
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else f *. (g ())
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(** Generalized Boys function.
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maxm : Maximum total angular momentum
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{% $F_m(x) = \frac{\gamma(m+1/2,x)}{2x^{m+1/2}}$ %}
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where %{ $\gamma$ %} is the incomplete gamma function.
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{% $F_0(0.) = 1$ %}
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{% $F_0(t) = \frac{\sqrt{\pi}}{2\sqrt{t}} \text{erf} ( \sqrt{t} )$ %}
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{% $F_m(0.) = \frac{1}{2m+1}$ %}
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{% $F_m(t) = \frac{\gamma{m+1/2,t}}{2t^{m+1/2}}
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{% $F_m(t) = \frac{ 2t\, F_{m+1}(t) + e^{-t} }{2m+1}$ %}
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*)
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let boys_function ~maxm t =
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assert (t >= 0.);
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match maxm with
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| 0 ->
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begin
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if t = 0. then [| 1. |] else
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let sq_t = sqrt t in
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[| (sq_pi_over_two /. sq_t) *. erf_float sq_t |]
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end
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| _ ->
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begin
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assert (maxm > 0);
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let result =
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Array.init (maxm+1) (fun m -> 1. /. float_of_int (2*m+1))
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in
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let power_t_inv = (maxm+maxm+1) in
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try
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let fmax =
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let t_inv = sqrt (1. /. t) in
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let n = float_of_int maxm in
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let dm = 0.5 +. n in
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let f = (pow t_inv power_t_inv ) in
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match classify_float f with
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| FP_normal -> (incomplete_gamma ~alpha:dm t) *. 0.5 *. f
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| FP_zero
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| FP_subnormal -> 0.
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| _ -> raise Exit
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in
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let emt = exp (-. t) in
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result.(maxm) <- fmax;
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for n=maxm-1 downto 0 do
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result.(n) <- ( (t+.t) *. result.(n+1) +. emt) *. result.(n)
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done;
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result
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with Exit -> result
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end
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let of_some = function
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| Some a -> a
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| None -> assert false
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(** {2 List functions} *)
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let list_some l =
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List.filter (function None -> false | _ -> true) l
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|> List.rev_map (function Some x -> x | _ -> assert false)
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|> List.rev
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let list_range first last =
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if last < first then [] else
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let rec aux accu = function
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| 0 -> first :: accu
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| i -> (aux [@tailcall]) ( (first+i)::accu ) (i-1)
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in
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aux [] (last-first)
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let list_pack n l =
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assert (n>=0);
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let rec aux i accu1 accu2 = function
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| [] -> if accu1 = [] then
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List.rev accu2
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else
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List.rev ((List.rev accu1) :: accu2)
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| a :: rest ->
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match i with
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| 0 -> (aux [@tailcall]) (n-1) [] ((List.rev (a::accu1)) :: accu2) rest
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| _ -> (aux [@tailcall]) (i-1) (a::accu1) accu2 rest
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in
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aux (n-1) [] [] l
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(** {2 Stream functions} *)
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let stream_range first last =
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Stream.from (fun i ->
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let result = i+first in
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if result <= last then
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Some result
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else None
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)
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let stream_to_list stream =
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let rec aux accu =
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let new_accu =
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try
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Some (Stream.next stream :: accu)
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with Stream.Failure -> None
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in
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match new_accu with
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| Some new_accu -> (aux [@tailcall]) new_accu
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| None -> accu
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in List.rev @@ aux []
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let stream_fold f init stream =
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let rec aux accu =
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let new_accu =
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try
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let element = Stream.next stream in
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Some (f accu element)
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with Stream.Failure -> None
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in
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match new_accu with
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| Some new_accu -> (aux [@tailcall]) new_accu
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| None -> accu
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in
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aux init
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(** {2 Array functions} *)
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let array_range first last =
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if last < first then [| |] else
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Array.init (last-first+1) (fun i -> i+first)
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let array_sum a =
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Array.fold_left ( +. ) 0. a
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let array_product a =
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Array.fold_left ( *. ) 1. a
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(** {2 Printers} *)
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let pp_float_array_size ppf a =
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Format.fprintf ppf "@[<2>@[ %d:@[<2>" (Array.length a);
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Array.iter (fun f -> Format.fprintf ppf "@[%10f@]@ " f) a;
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Format.fprintf ppf "]@]@]"
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let pp_float_array ppf a =
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Format.fprintf ppf "@[<2>[@ ";
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Array.iter (fun f -> Format.fprintf ppf "@[%10f@]@ " f) a;
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Format.fprintf ppf "]@]"
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let pp_float_2darray ppf a =
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Format.fprintf ppf "@[<2>[@ ";
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Array.iter (fun f -> Format.fprintf ppf "@[%a@]@ " pp_float_array f) a;
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Format.fprintf ppf "]@]"
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let pp_float_2darray_size ppf a =
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Format.fprintf ppf "@[<2>@[ %d:@[" (Array.length a);
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Array.iter (fun f -> Format.fprintf ppf "@[%a@]@ " pp_float_array_size f) a;
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Format.fprintf ppf "]@]@]"
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let pp_bitstring n ppf bs =
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String.init n (fun i -> if (Z.testbit bs i) then '+' else '-')
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|> Format.fprintf ppf "@[<h>%s@]"
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