mirror of
https://gitlab.com/scemama/EZFIO.git
synced 2024-11-19 04:22:25 +01:00
Bash/ezfio.sh
This commit is contained in:
parent
c29b6066c8
commit
62e78049c2
18
.gitignore
vendored
18
.gitignore
vendored
@ -1 +1,19 @@
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update.sh
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Python/ezfio.py
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Ocaml/ezfio.ml
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Bash/ezfio.sh
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.ninja_deps
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.ninja_log
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generated.ninja
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lib/libezfio.a
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lib/libezfio_irp.a
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make.config
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src/IRPF90_man/
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src/IRPF90_temp/
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src/irpf90.make
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src/irpf90_entities
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src/libezfio_groups-gen.py
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src/libezfio_util-gen.py
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src/*.pyc
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src/run
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src/tags
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0
Bash/.empty
Normal file
0
Bash/.empty
Normal file
270
Bash/ezfio.sh
270
Bash/ezfio.sh
@ -1,4 +1,272 @@
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#!/bin/bash
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# TODO
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function _ezfio_usage()
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{
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echo "
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Usage:
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ezfio set_file EZFIO_DIRECTORY
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ezfio unset_file
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ezfio has DIRECTORY ITEM
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ezfio get DIRECTORY ITEM
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ezfio set DIRECTORY ITEM VALUE : Scalar values
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ezfio set DIRECTORY ITEM : Array values read from stdin
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ezfio set_verbose
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ezfio unset_verbose
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"
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}
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function _require_ezfio_file()
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{
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if [[ -z ${EZFIO_FILE} ]]
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then
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echo "EZFIO directory not set: try 'ezfio set_file'"
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return 1
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fi
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if [[ ! -d ${EZFIO_FILE} ]]
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then
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echo "EZFIO directory not accessible: try 'ezfio set_file'"
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return 1
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fi
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}
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function _require_first_argument()
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{
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if [[ -z $1 ]]
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then
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_ezfio_usage
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echo "Error: First argument not set"
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return 1
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else
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return 0
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fi
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}
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function _require_second_argument()
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{
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if [[ -z $2 ]]
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then
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_ezfio_usage
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echo "Error: Second argument not set"
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return 1
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fi
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}
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function _ezfio_set_verbose()
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{
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function _ezfio_info()
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{
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echo "$1"
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}
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return 0
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}
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function _ezfio_unset_verbose()
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{
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function _ezfio_info()
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{
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:
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}
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return 0
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}
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function _ezfio_set_file()
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{
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_require_first_argument $@ || return 1
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if [[ ! -d $1 ]]
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then
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echo "No such directory: $1"
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return 1
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fi
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export EZFIO_FILE=$1
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_ezfio_info "Set file ${EZFIO_FILE}"
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return 0
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}
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function _ezfio_unset_file()
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{
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_require_ezfio_file || return 1
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_ezfio_info "Unset file ${EZFIO_FILE}"
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unset EZFIO_FILE
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return 0
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}
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function _ezfio_has()
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{
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_require_ezfio_file || return 1
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_require_first_argument $@ || return 1
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if [[ ! -d ${EZFIO_FILE}/${1,,} ]]
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then
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return 1
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fi
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if [[ -z $2 ]]
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then
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return 0
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fi
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if [[ -f ${EZFIO_FILE}/${1,,}/${2,,} ]]
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then
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_ezfio_info "EZFIO has $1 / $2"
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return 0
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elif [[ -f ${EZFIO_FILE}/${1,,}/${2,,}.gz ]]
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then
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_ezfio_info "EZFIO has $1 / $2"
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return 0
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else
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_ezfio_info "EZFIO doesn't have $1 / $2"
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return 1
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fi
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}
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function _ezfio_get()
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{
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_require_ezfio_file || return 1
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if [[ -z $1 ]]
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then
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ls ${EZFIO_FILE}
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return 0
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fi
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_ezfio_has $@ || return 1
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if [[ -z $2 ]]
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then
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ls ${EZFIO_FILE}/${1,,}
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return 0
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fi
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if [[ -f ${EZFIO_FILE}/${1,,}/${2,,} ]]
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then
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cat ${EZFIO_FILE}/${1,,}/${2,,}
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elif [[ -f ${EZFIO_FILE}/${1,,}/${2,,}.gz ]]
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then
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zcat ${EZFIO_FILE}/${1,,}/${2,,}.gz
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else
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_ezfio_info "EZFIO doesn't have $1 / $2"
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return 1
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fi
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return 0
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}
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function _ezfio_set()
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{
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_require_ezfio_file || return 1
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_require_first_argument $@ || return 1
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_require_second_argument $@ || return 2
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if [[ ! -d ${EZFIO_FILE}/${1,,} ]]
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then
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mkdir -p ${EZFIO_FILE}/${1,,}
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fi
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if [[ ! -z "$3" ]]
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then
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echo "$3" > ${EZFIO_FILE}/${1,,}/${2,,}
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else
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zcat > ${EZFIO_FILE}/${1,,}/${2,,}.gz
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fi
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return 0
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}
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#---
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function ezfio()
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{
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case $1 in
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"has")
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shift
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_ezfio_has $@
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;;
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"set")
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shift
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_ezfio_set $@
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;;
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"get")
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shift
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_ezfio_get $@
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;;
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"set_file")
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shift
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_ezfio_set_file $@
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;;
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"unset_file")
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shift
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_ezfio_unset_file
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;;
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"set_verbose")
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_ezfio_set_verbose
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;;
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"unset_verbose")
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_ezfio_unset_verbose
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;;
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*)
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_ezfio_usage
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;;
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esac
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}
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_ezfio_unset_verbose
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# Completion
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_Complete()
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{
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local cur
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COMPREPLY=()
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cur="${COMP_WORDS[COMP_CWORD]}"
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prev="${COMP_WORDS[COMP_CWORD-1]}"
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prev2="${COMP_WORDS[COMP_CWORD-2]}"
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case "${prev2}" in
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set|has|get)
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COMPREPLY=( $(compgen -W "$(cd ${EZFIO_FILE}/${prev} ; ls | sed 's/\.gz//' )" -- $cur ) )
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return 0
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;;
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esac
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case "${prev}" in
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unset_file|set_verbose|unset_verbose)
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COMPREPLY=()
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return 0
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;;
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set_file)
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COMPREPLY=( $(compgen -W "$(\ls -d */ | sed 's|/||g')" -- ${cur} ) )
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return 0
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;;
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set|has|get)
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COMPREPLY=( $(compgen -W "$(cd ${EZFIO_FILE} ; \ls -d */ | sed 's|/||g')" -- $cur ) )
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return 0
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;;
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*)
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if [[ -z ${EZFIO_FILE} ]]
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then
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COMPREPLY=( $(compgen -W 'set_file \
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set_verbose unset_verbose -h' -- $cur ) )
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else
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COMPREPLY=( $(compgen -W 'has get set unset_file \
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set_verbose unset_verbose -h' -- $cur ) )
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fi
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return 0
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;;
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esac
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}
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complete -F _Complete ezfio
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8
Makefile
8
Makefile
@ -31,10 +31,10 @@ default: make.config
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$(MAKE) -C $$PWD/src
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clean:
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- bash -c "[[ -e lib/libezfio.a ]] && rm $$PWD/lib/*"
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- bash -c "[[ -e Python/ezfio.py ]] && rm $$PWD/Python/*"
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- bash -c "[[ -e Ocaml/ezfio.ml ]] && rm $$PWD/Ocaml/*"
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- bash -c "[[ -e Bash/ezfio.sh ]] && rm $$PWD/Bash/*"
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- bash -c "[[ -f lib/libezfio.a ]] && rm $$PWD/lib/*"
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- bash -c "[[ -f Python/ezfio.py ]] && rm $$PWD/Python/*"
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- bash -c "[[ -f Ocaml/ezfio.ml ]] && rm $$PWD/Ocaml/*"
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- bash -c "[[ -f Bash/ezfio.sh ]] && rm $$PWD/Bash/*"
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- $(MAKE) -C $$PWD/src veryclean
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archive: distclean
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86
README
86
README
@ -1,86 +0,0 @@
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======================================================================
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EZFIO
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======================================================================
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Author: A. Scemama, LCPQ-IRSAMC, CNRS-Universite Paul Sabatier
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scemama@irsamc.ups-tlse.fr
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== About EZFIO ==
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EZFIO is the Easy Fortran I/O library. With EZFIO, your data is organized
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in a file system inside a main directory. This main directory contains
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subdirectories, which contain files. Each file corresponds to a data. For
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atomic data the file is a plain text file, and for array data the file is a
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gzipped text file.
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== Building a library ==
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Your EZFIO library is built according to the definitions given in the
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files of the 'config' directory. A configuration file can be, for example:
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||||
---
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||||
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system
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title character*(128)
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num_elec integer = system_num_alpha + system_num_beta
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num_alpha integer
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num_beta integer
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||||
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||||
geometry
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num_atom integer
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nuc_energy double precision
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label character*(32) (geometry_num_atom)
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atomic_number integer (geometry_num_atom)
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charge double precision (geometry_num_atom)
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coord double precision (3,geometry_num_atom)
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||||
---
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||||
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||||
A subdirectory is defined by its name at the beginning of a new line. The
|
||||
data contained in this subdirectory is defined by the triplet
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||||
(name,type,dimension), leaving at least one white space at the beginning of the
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||||
line.
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||||
If the dimension of an array is a data defined in the file, its name can be
|
||||
used as <name of the subdirectory>_<name of the data>. For example, the
|
||||
dimension '(geometry_num_atom)' uses the data 'num_atom' of subdirectory
|
||||
'geometry'.
|
||||
A data can also be the result of a simple operation. In that case, the
|
||||
simple operation is written after an '=' symbol (as for 'num_elec'). In
|
||||
that case, the data is read_only.
|
||||
|
||||
Once your configuration file is ready, run 'make' and your library will be
|
||||
built.
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||||
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||||
== Using the library ==
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||||
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||||
In the following, we will call 'EZFIO file' the main directory containing the
|
||||
EZFIO data.
|
||||
|
||||
Only one EZFIO file can be manipulated at a time. To select a file, use:
|
||||
character*(64) :: filename
|
||||
call ezfio_set_file(filename)
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||||
To get the name of the current used EZFIO file, use
|
||||
character*(64) :: filename
|
||||
call ezfio_get_filename(filename)
|
||||
|
||||
For each data, 3 subroutines are created.
|
||||
<dir> is the name of the subdirectory which contains the data and
|
||||
<data> is the name of the data.
|
||||
|
||||
* subroutine ezfio_has_<dir>_<data> (result)
|
||||
sets result to .True. if the data exists in the EZFIO file, .False. otherwise.
|
||||
|
||||
* subroutine ezfio_set_<dir>_<data> (source)
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||||
writes the source data to the EZFIO file.
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||||
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||||
* subroutine ezfio_get_<dir>_<data> (destination)
|
||||
reads the data from the EZFIO file to the destination.
|
||||
|
||||
For safety, a read-only attribute can be set to the file by
|
||||
call ezfio_set_read_only(.True.)
|
||||
or inquired by
|
||||
logical :: is_read_only
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||||
call ezfio_is_read_only(is_read_only)
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||||
|
||||
|
||||
|
||||
22
build.ninja
Normal file
22
build.ninja
Normal file
@ -0,0 +1,22 @@
|
||||
include version
|
||||
|
||||
rule build_generated_ninja
|
||||
command = python configure.py
|
||||
description = Creating generated.ninja
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||||
generator = 1
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||||
|
||||
rule run_ninja
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||||
command = ninja -f $in
|
||||
|
||||
rule build_archive
|
||||
command = git archive --format=tar HEAD > EZFIO.${version}.tar && mkdir -p EZFIO && cd EZFIO && tar -xvf ../EZFIO.${version}.tar && cd .. && rm EZFIO.${version}.tar && tar -zcvf EZFIO.${version}.tar.gz EZFIO && rm -rf EZFIO
|
||||
description = Building archive
|
||||
|
||||
build make.config generated.ninja: build_generated_ninja | configure.py
|
||||
|
||||
build all: run_ninja generated.ninja
|
||||
default all
|
||||
|
||||
build EZFIO.${VERSION}.tar.gz: build_archive
|
||||
|
||||
build archive: phony EZFIO.${VERSION}.tar.gz
|
||||
130
configure.py
130
configure.py
@ -2,21 +2,119 @@
|
||||
|
||||
import os
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
d_default = {
|
||||
"IRPF90" : 'irpf90',
|
||||
"FC" : 'gfortran -g -ffree-line-length-none -fPIC',
|
||||
"FCFLAGS" : '-O2',
|
||||
"RANLIB" : 'ranlib',
|
||||
"AR" : 'ar',
|
||||
"NINJA" : 'ninja'
|
||||
}
|
||||
with open("version",'r') as f:
|
||||
version = f.read().strip().rsplit('=')[1]
|
||||
|
||||
with open("make.config",'w') as out:
|
||||
for var,default in d_default.iteritems():
|
||||
d_default = {
|
||||
"VERSION" : version,
|
||||
"IRPF90" : 'irpf90',
|
||||
"FC" : 'gfortran -g -ffree-line-length-none -fPIC',
|
||||
"FCFLAGS" : '-O2',
|
||||
"RANLIB" : 'ranlib',
|
||||
"AR" : 'ar',
|
||||
"NINJA" : 'ninja',
|
||||
"CONFIG_FILES" :
|
||||
' '.join([ x for x in os.listdir('config') if x != '.empty'])
|
||||
}
|
||||
|
||||
def create_make_config():
|
||||
|
||||
with open("make.config",'w') as out:
|
||||
for var,default in d_default.iteritems():
|
||||
try:
|
||||
cur = os.environ[var]
|
||||
except KeyError:
|
||||
cur = default
|
||||
out.write('{0}={1}\n'.format(var,cur))
|
||||
|
||||
|
||||
def read_make_config():
|
||||
result = {}
|
||||
with open("make.config",'r') as f:
|
||||
for line in f.readlines():
|
||||
try:
|
||||
cur = os.environ[var]
|
||||
except KeyError:
|
||||
cur = default
|
||||
out.write("{0} = {1}\n".format(var,cur))
|
||||
key, value = line.strip().split('=')
|
||||
except:
|
||||
print "Error in make.config:"
|
||||
print line
|
||||
sys.exit(1)
|
||||
result[key] = value
|
||||
return result
|
||||
|
||||
|
||||
def create_build_ninja():
|
||||
|
||||
if "make.config" not in os.listdir(os.getcwd()):
|
||||
create_make_config()
|
||||
|
||||
d = read_make_config()
|
||||
|
||||
d["irpf90_files"] = [ "src/{0}".format(x) for x in
|
||||
"""
|
||||
IRPF90_temp/build.ninja irpf90.make irpf90_entities
|
||||
tags
|
||||
""".split() ] + \
|
||||
"""
|
||||
Python/ezfio.py Ocaml/ezfio.ml Bash/ezfio.sh
|
||||
""".split()
|
||||
|
||||
d["irpf90_sources"] = [ "src/{0}".format(x) for x in
|
||||
"""
|
||||
libezfio_error.irp.f create_ocaml.py groups_templates.py
|
||||
libezfio_file.irp.f create_python.py libezfio_groups-gen.py
|
||||
libezfio_groups.irp.f ezfio-head.py libezfio_util-gen.py
|
||||
libezfio_util.irp.f ezfio-tail.py read_config.py run.irp.f
|
||||
f_types.py test.py create_bash.py groups.py
|
||||
""".split() ] + [ "make.config" ]
|
||||
|
||||
d["irpf90_files"] = ' '.join(d["irpf90_files"])
|
||||
d["irpf90_sources"] = ' '.join(d["irpf90_sources"])
|
||||
|
||||
|
||||
template = """
|
||||
rule build_archive
|
||||
command = git archive --format=tar HEAD > EZFIO.{VERSION}.tar && mkdir -p EZFIO && cd EZFIO && tar -xvf ../EZFIO.{VERSION}.tar && cd .. && rm EZFIO.{VERSION}.tar && tar -zcvf EZFIO.{VERSION}.tar.gz EZFIO && rm -rf EZFIO
|
||||
description = Building archive
|
||||
|
||||
rule build_make_config
|
||||
command = python configure.py
|
||||
description = Creating make.config
|
||||
|
||||
rule compile_irpf90
|
||||
command = cd src ; {IRPF90} --ninja
|
||||
description = Compiling IRPF90
|
||||
|
||||
rule build_irpf90_a
|
||||
command = {NINJA} -C src/IRPF90_temp
|
||||
description = Compiling Fortran files
|
||||
|
||||
rule build_libezfio_a
|
||||
command = cp src/IRPF90_temp/irpf90.a lib/libezfio.a ; {RANLIB} lib/libezfio.a
|
||||
description = Building libezfio.a
|
||||
|
||||
rule build_libezfio_irp_a
|
||||
command = cp lib/libezfio.a lib/libezfio_irp.a ; {AR} dv lib/libezfio_irp.a irp_stack.irp.o ; {RANLIB} lib/libezfio_irp.a
|
||||
description = Building libezfio_irp.a
|
||||
|
||||
|
||||
|
||||
build make.config: build_make_config | configure.py
|
||||
|
||||
build {irpf90_files}: compile_irpf90 | {irpf90_sources}
|
||||
|
||||
build src/IRPF90_temp/irpf90.a: build_irpf90_a | {irpf90_files}
|
||||
|
||||
build lib/libezfio.a: build_libezfio_a | src/IRPF90_temp/irpf90.a
|
||||
|
||||
build lib/libezfio_irp.a: build_libezfio_irp_a | lib/libezfio.a
|
||||
|
||||
|
||||
"""
|
||||
|
||||
with open('generated.ninja','w') as f:
|
||||
f.write(template.format(**d))
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
|
||||
create_build_ninja()
|
||||
|
||||
@ -77,13 +77,13 @@ def run():
|
||||
'let has_%(group)s_%(var)s () = has_array "%(group)s" "%(var)s" ;;' %(d) ]
|
||||
|
||||
|
||||
file = open('ezfio.ml','r')
|
||||
file = open('ezfio.sh','r')
|
||||
template = file.read()
|
||||
file.close()
|
||||
template = template.replace("(*$HEAD*)",'\n'.join(head))
|
||||
template = template.replace("(*$TAIL*)",'\n'.join(tail))
|
||||
|
||||
file = open('../Ocaml/ezfio.ml','w')
|
||||
file = open('../Bash/ezfio-gen.sh','w')
|
||||
file.write(template)
|
||||
file.close()
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user