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@ -4,19 +4,19 @@ There is no obligation to put any order in the keywords
## MANDATORY KEYWORDS
1.BATH bath_radius
1. BATH bath_radius
1.PSEUDO first_shell_radius
1. PSEUDO first_shell_radius
1.OUTPUT output_file_name
1. OUTPUT output_file_name
1.PATTERN nAtom1 labelAtom1 nAtom2 labelAtom2 ...
1. PATTERN nAtom1 labelAtom1 nAtom2 labelAtom2 ...
Not that, if you have more than once the Atom1, you will have to place it again at the end (for example, 5 Ir 8 Sr 6 O 5 Ir)
1.NPATTERN nPattern
1. NPATTERN nPattern
1.LATTICE
1. LATTICE
a cell_parameter_a
b cell_parameter_b
c cell_parameter_c
@ -26,59 +26,59 @@ Not that, if you have more than once the Atom1, you will have to place it again
1. ATOMS label charge neighbours radius_of_the_coordination_sphere ...
1.SYMOP
1. SYMOP
x,y,z
...
POMYS
1.GENERATOR
1. GENERATOR
atom1 x_frac y_frac z_frac
...
ROTARENEG
1.END_OF_INPUT
1. END_OF_INPUT
## OPTIONNAL KEYWORDS
1.TRANSLATE x y z
1. TRANSLATE x y z
Crystal MET has some trouble finding specific pattern, sometimes forcing a translation can help finding it
1.CENTER atom1 atom2 ...
1. CENTER atom1 atom2 ...
Will chose the atom (or the center of the atoms) as the center of the sphere
1.X_AXIS atom1 atom2 ...
1. X_AXIS atom1 atom2 ...
Will chose the atom (or the center of the atoms) as the x axis
1.Y_AXIS atom1 atom2 ...
1. Y_AXIS atom1 atom2 ...
Will chose the atom (or the center of the atoms) as the y axis
1.Z_AXIS atom1 atom2 ...
1. Z_AXIS atom1 atom2 ...
Will chose the atom (or the center of the atoms) as the z axis
1.NOTINPP atoms not in the first shell
1. NOTINPP atoms not in the first shell
1.COLOR
1. COLOR
Shows the bath sorted with colors
1.NOCOLOR
1. NOCOLOR
Shows the bath sorted by atoms
1.SEEFRAG
1. SEEFRAG
Shows the fragment once found (recommended)
1.OPTIMIZATION
1. OPTIMIZATION
Will use an optimization method to set the total charge to 0 by slightly changing the charges of the outer shell atoms
1.EVJEN
1. EVJEN
Simili Evjen method to calculate the charge of the atom on the outer shell, note that OPTIMIZATION and EVJEN keywords can not be used together